RNA–Protein interactions for RNA: ENST00000302528.11

CLIP1-201, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 5 BASIC

Gene CLIP1, Length 5,833 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-201ENST00000302528 CNOT7Q9UIV1 285 aaKnown RBP10.57□□□□□ -0.72
CLIP1-201ENST00000302528 PSME2Q9UL46 239 aa10.57□□□□□ -0.72
CLIP1-201ENST00000302528 TBX20Q9UMR3 447 aa10.57□□□□□ -0.72
CLIP1-201ENST00000302528 OR10H1Q9Y4A9 318 aa10.57□□□□□ -0.72
CLIP1-201ENST00000302528 MROH7Q68CQ1 1323 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 C15orf38-AP3S2A0A0A6YYH1 394 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 ZBTB14O43829 449 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 CHRNGP07510 517 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 CYP2A6P11509 494 aaPredicted RBP10.56□□□□□ -0.72
CLIP1-201ENST00000302528 H2AFXP16104 143 aaPredicted RBP10.56□□□□□ -0.72
CLIP1-201ENST00000302528 S100A1P23297 94 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 USP46P62068 366 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 NR1I3Q14994 352 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 N4BP2L1Q5TBK1 243 aaPredicted RBP10.56□□□□□ -0.72
CLIP1-201ENST00000302528 RAD9BQ6WBX8 426 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 ARPINQ7Z6K5 226 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 SGMS1Q86VZ5 419 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 HIST2H2ABQ8IUE6 130 aaPredicted RBP10.56□□□□□ -0.72
CLIP1-201ENST00000302528 ADHFE1Q8IWW8 467 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 ZNF276Q8N554 614 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 KLHL23Q8NBE8 558 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 WDR60Q8WVS4 1066 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 PRCCQ92733 491 aaPredicted RBP10.56□□□□□ -0.72
CLIP1-201ENST00000302528 APBB2Q92870 758 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 SLC38A2Q96QD8 506 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 CDK5RAP1Q96SZ6 601 aaKnown RBP10.56□□□□□ -0.72
CLIP1-201ENST00000302528 RIT2Q99578 217 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 CRISPLD1Q9H336 500 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 VCPKMTQ9H867 229 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 AHCYL1O43865 530 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 CETPP11597 493 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 INTS11Q5TA45 600 aaKnown RBP10.56□□□□□ -0.72
CLIP1-201ENST00000302528 CCDC36Q8IYA8 594 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 RNF148Q8N7C7 305 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 ZNF248Q8NDW4 579 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 CHST13Q8NET6 341 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 SYN2Q92777 582 aaPredicted RBP10.56□□□□□ -0.72
CLIP1-201ENST00000302528 PANX3Q96QZ0 392 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 TMEM121Q9BTD3 319 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 C1QTNF7Q9BXJ2 289 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 TLR8Q9NR97 1041 aaKnown RBP10.56□□□□□ -0.72
CLIP1-201ENST00000302528 ZNF37AP17032 561 aaPredicted RBP10.56□□□□□ -0.72
CLIP1-201ENST00000302528 NFKB1P19838 968 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 PIK3CGP48736 1102 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 SLC34A1Q06495 639 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 ARHGAP22Q7Z5H3 698 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 CACUL1Q86Y37 369 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 ADGRG2Q8IZP9 1017 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 TSPAN14Q8NG11 270 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 HASPINQ8TF76 798 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 MTFMTQ96DP5 389 aaKnown RBP10.56□□□□□ -0.72
CLIP1-201ENST00000302528 ANKRD27Q96NW4 1050 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 SEMA6AQ9H2E6 1030 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.56□□□□□ -0.72
CLIP1-201ENST00000302528 RASSF1Q9NS23 344 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 SLC24A2Q9UI40 661 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 HACL1Q9UJ83 578 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 USP18Q9UMW8 372 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 AXIN2Q9Y2T1 843 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 GAS2O43903 313 aaKnown RBP10.56□□□□□ -0.72
CLIP1-201ENST00000302528 PLOD3O60568 738 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 TMCC2O75069 709 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 SERPINE1P05121 402 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 ERCC2P18074 760 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 ME2P23368 584 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 SREBF2Q12772 1141 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 TOP3AQ13472 1001 aaPredicted RBP10.56□□□□□ -0.72
CLIP1-201ENST00000302528 FAM187BQ17R55 369 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 PREPLQ4J6C6 727 aaPredicted RBP10.56□□□□□ -0.72
CLIP1-201ENST00000302528 ZFP1Q6P2D0 407 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 ATG14Q6ZNE5 492 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 RGL4Q8IZJ4 473 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 NOA1Q8NC60 698 aaKnown RBP10.56□□□□□ -0.72
CLIP1-201ENST00000302528 VPS35Q96QK1 796 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 MTMR12Q9C0I1 747 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 TBC1D30Q9Y2I9 924 aa10.56□□□□□ -0.72
CLIP1-201ENST00000302528 BTN3A1O00481 513 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 NCAM2O15394 837 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 SGPL1O95470 568 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 RARGP13631 454 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 TCF4P15884 667 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 AMD1P17707 334 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 CRABP2P29373 138 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 ARL3P36405 182 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 GRTP1Q5TC63 336 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 PCNX4Q63HM2 1172 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 SP8Q8IXZ3 490 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 AMER2Q8N7J2 671 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 OR7A2PQ8NGA2 310 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 MAGEC3Q8TD91 643 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 COX4I2Q96KJ9 171 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 CDC42EP4Q9H3Q1 356 aaKnown RBP10.55□□□□□ -0.72
CLIP1-201ENST00000302528 ATP13A1Q9HD20 1204 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 PCDHB12Q9Y5F1 795 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 A0A087WZ62 844 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 MAGEB3O15480 346 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 RASA1P20936 1047 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 ATP5F1P24539 256 aaPredicted RBP10.55□□□□□ -0.72
CLIP1-201ENST00000302528 ALDH3A2P51648 485 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 NEK3P51956 506 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms