RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 LATS2Q9NRM7 1088 aa13.94□□□□□ -0.18
LDLR-201ENST00000252444 THEGQ9P2T0 379 aa13.94□□□□□ -0.18
LDLR-201ENST00000252444 NOCTQ9UK39 431 aaKnown RBP13.94□□□□□ -0.18
LDLR-201ENST00000252444 DYRK1BQ9Y463 629 aa13.94□□□□□ -0.18
LDLR-201ENST00000252444 SUPT3HB4E1H0 165 aa13.94□□□□□ -0.18
LDLR-201ENST00000252444 RFC1P35251 1148 aaPredicted RBP13.94□□□□□ -0.18
LDLR-201ENST00000252444 ARHGDIAP52565 204 aa13.94□□□□□ -0.18
LDLR-201ENST00000252444 ELP6Q0PNE2 266 aa13.94□□□□□ -0.18
LDLR-201ENST00000252444 KCNT1Q5JUK3 1230 aa13.94□□□□□ -0.18
LDLR-201ENST00000252444 THEMIS2Q5TEJ8 643 aa13.94□□□□□ -0.18
LDLR-201ENST00000252444 LPCAT2Q7L5N7 544 aa13.94□□□□□ -0.18
LDLR-201ENST00000252444 SPATA21Q7Z572 469 aa13.94□□□□□ -0.18
LDLR-201ENST00000252444 MAGEB18Q96M61 343 aa13.94□□□□□ -0.18
LDLR-201ENST00000252444 ASPSCR1Q9BZE9 553 aa13.94□□□□□ -0.18
LDLR-201ENST00000252444 ACOT9Q9Y305 439 aa13.94□□□□□ -0.18
LDLR-201ENST00000252444 TNPO3Q9Y5L0 923 aaKnown RBP13.94□□□□□ -0.18
LDLR-201ENST00000252444 MAGEC1O60732 1142 aa13.94□□□□□ -0.18
LDLR-201ENST00000252444 AMPD1P23109 780 aa13.94□□□□□ -0.18
LDLR-201ENST00000252444 KELP23276 732 aa13.94□□□□□ -0.18
LDLR-201ENST00000252444 ADRA1BP35368 520 aa13.94□□□□□ -0.18
LDLR-201ENST00000252444 NAA25Q14CX7 972 aa13.94□□□□□ -0.18
LDLR-201ENST00000252444 EXT2Q93063 718 aa13.94□□□□□ -0.18
LDLR-201ENST00000252444 CDCA3Q99618 268 aaPredicted RBP13.94□□□□□ -0.18
LDLR-201ENST00000252444 PPARGC1AQ9UBK2 798 aaKnown RBP13.94□□□□□ -0.18
LDLR-201ENST00000252444 L1RE1Q9UN81 338 aa13.94□□□□□ -0.18
LDLR-201ENST00000252444 SLC38A8A6NNN8 435 aa13.94□□□□□ -0.18
LDLR-201ENST00000252444 IFRD1O00458 451 aaPredicted RBP13.94□□□□□ -0.18
LDLR-201ENST00000252444 ADSSP30520 456 aa13.94□□□□□ -0.18
LDLR-201ENST00000252444 CDH5P33151 784 aaPredicted RBP13.94□□□□□ -0.18
LDLR-201ENST00000252444 AP1S1P61966 158 aa13.94□□□□□ -0.18
LDLR-201ENST00000252444 TRIM48Q8IWZ4 208 aa13.94□□□□□ -0.18
LDLR-201ENST00000252444 NKAPQ8N5F7 415 aaKnown RBP13.94□□□□□ -0.18
LDLR-201ENST00000252444 TRIB2Q92519 343 aa13.94□□□□□ -0.18
LDLR-201ENST00000252444 CORO1BQ9BR76 489 aa13.94□□□□□ -0.18
LDLR-201ENST00000252444 SLC4A5Q9BY07 1137 aa13.94□□□□□ -0.18
LDLR-201ENST00000252444 OSBPL2Q9H1P3 480 aa13.94□□□□□ -0.18
LDLR-201ENST00000252444 GID8Q9NWU2 228 aa13.94□□□□□ -0.18
LDLR-201ENST00000252444 GNPTGQ9UJJ9 305 aa13.94□□□□□ -0.18
LDLR-201ENST00000252444 NOL4O94818 638 aa13.94□□□□□ -0.18
LDLR-201ENST00000252444 DAOAP59103 153 aa13.94□□□□□ -0.18
LDLR-201ENST00000252444 ZKSCAN8Q15776 578 aaPredicted RBP13.94□□□□□ -0.18
LDLR-201ENST00000252444 FAM45BPQ6NSW5 357 aa13.94□□□□□ -0.18
LDLR-201ENST00000252444 FAM45AQ8TCE6 357 aa13.94□□□□□ -0.18
LDLR-201ENST00000252444 NKD2Q969F2 451 aaPredicted RBP13.94□□□□□ -0.18
LDLR-201ENST00000252444 PGLYRP2Q96PD5 576 aa13.94□□□□□ -0.18
LDLR-201ENST00000252444 NLNQ9BYT8 704 aa13.94□□□□□ -0.18
LDLR-201ENST00000252444 TMBIM4Q9HC24 238 aa13.94□□□□□ -0.18
LDLR-201ENST00000252444 SLC2A4P14672 509 aa13.93□□□□□ -0.18
LDLR-201ENST00000252444 ITGB6P18564 788 aa13.93□□□□□ -0.18
LDLR-201ENST00000252444 CHRM3P20309 590 aa13.93□□□□□ -0.18
LDLR-201ENST00000252444 ADRA1DP25100 572 aa13.93□□□□□ -0.18
LDLR-201ENST00000252444 TTPAP49638 278 aa13.93□□□□□ -0.18
LDLR-201ENST00000252444 CLCNKBP51801 687 aa13.93□□□□□ -0.18
LDLR-201ENST00000252444 SLC5A3P53794 718 aa13.93□□□□□ -0.18
LDLR-201ENST00000252444 GAD2Q05329 585 aa13.93□□□□□ -0.18
LDLR-201ENST00000252444 RCN2Q14257 317 aa13.93□□□□□ -0.18
LDLR-201ENST00000252444 HGSNATQ68CP4 663 aa13.93□□□□□ -0.18
LDLR-201ENST00000252444 KYAT3Q6YP21 454 aaKnown RBP13.93□□□□□ -0.18
LDLR-201ENST00000252444 UBE2E3Q969T4 207 aa13.93□□□□□ -0.18
LDLR-201ENST00000252444 PGM2Q96G03 612 aa13.93□□□□□ -0.18
LDLR-201ENST00000252444 ADAMTS10Q9H324 1103 aa13.93□□□□□ -0.18
LDLR-201ENST00000252444 PRDM10Q9NQV6 1147 aa13.93□□□□□ -0.18
LDLR-201ENST00000252444 TRMT13Q9NUP7 481 aaKnown RBP13.93□□□□□ -0.18
LDLR-201ENST00000252444 TAS2R13Q9NYV9 303 aa13.93□□□□□ -0.18
LDLR-201ENST00000252444 CPSF2Q9P2I0 782 aaKnown RBP13.93□□□□□ -0.18
LDLR-201ENST00000252444 TLR6Q9Y2C9 796 aa13.93□□□□□ -0.18
LDLR-201ENST00000252444 A0A1B0GVM2 712 aa13.93□□□□□ -0.18
LDLR-201ENST00000252444 TCAF2A6NFQ2 919 aa13.93□□□□□ -0.18
LDLR-201ENST00000252444 GRK3P35626 688 aa13.93□□□□□ -0.18
LDLR-201ENST00000252444 NOMO1Q15155 1222 aa13.93□□□□□ -0.18
LDLR-201ENST00000252444 DBF4BQ8NFT6 615 aa13.93□□□□□ -0.18
LDLR-201ENST00000252444 PHOSPHO2Q8TCD6 241 aa13.93□□□□□ -0.18
LDLR-201ENST00000252444 QKIQ96PU8 341 aaKnown RBP eCLIP13.93□□□□□ -0.18
LDLR-201ENST00000252444 CIPCQ9C0C6 399 aa13.93□□□□□ -0.18
LDLR-201ENST00000252444 ACSL4O60488 711 aa13.93□□□□□ -0.18
LDLR-201ENST00000252444 BRCC3P46736 316 aa13.93□□□□□ -0.18
LDLR-201ENST00000252444 KYNUQ16719 465 aa13.93□□□□□ -0.18
LDLR-201ENST00000252444 ZNF783Q6ZMS7 281 aa13.93□□□□□ -0.18
LDLR-201ENST00000252444 CHST9Q7L1S5 443 aa13.93□□□□□ -0.18
LDLR-201ENST00000252444 BEND5Q7L4P6 421 aa13.93□□□□□ -0.18
LDLR-201ENST00000252444 GNEQ9Y223 722 aaKnown RBP13.93□□□□□ -0.18
LDLR-201ENST00000252444 BACE2Q9Y5Z0 518 aa13.93□□□□□ -0.18
LDLR-201ENST00000252444 SOD2P04179 222 aa13.93□□□□□ -0.18
LDLR-201ENST00000252444 SKIV2L2P42285 1042 aaKnown RBP13.93□□□□□ -0.18
LDLR-201ENST00000252444 C9orf72Q96LT7 481 aa13.93□□□□□ -0.18
LDLR-201ENST00000252444 TMEM121Q9BTD3 319 aa13.93□□□□□ -0.18
LDLR-201ENST00000252444 SCML2Q9UQR0 700 aa13.93□□□□□ -0.18
LDLR-201ENST00000252444 RAD51BO15315 384 aa13.92□□□□□ -0.18
LDLR-201ENST00000252444 AP5Z1O43299 807 aa13.92□□□□□ -0.18
LDLR-201ENST00000252444 SMAD3P84022 425 aaKnown RBP13.92□□□□□ -0.18
LDLR-201ENST00000252444 MTSS1LQ765P7 747 aa13.92□□□□□ -0.18
LDLR-201ENST00000252444 CREG2Q8IUH2 290 aa13.92□□□□□ -0.18
LDLR-201ENST00000252444 CXorf40AQ8TE69 158 aa13.92□□□□□ -0.18
LDLR-201ENST00000252444 SLC22A17Q8WUG5 538 aa13.92□□□□□ -0.18
LDLR-201ENST00000252444 KAT5Q92993 513 aa13.92□□□□□ -0.18
LDLR-201ENST00000252444 PCYT2Q99447 389 aa13.92□□□□□ -0.18
LDLR-201ENST00000252444 PCDH18Q9HCL0 1135 aa13.92□□□□□ -0.18
LDLR-201ENST00000252444 AHSPQ9NZD4 102 aa13.92□□□□□ -0.18
LDLR-201ENST00000252444 TRIM49D1C9J1S8 452 aa13.92□□□□□ -0.18
LDLR-201ENST00000252444 ALADP13716 330 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms