RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 ALS2Q96Q42 1657 aa13.81□□□□□ -0.2
CLN3-261ENST00000637686 TMF1P82094 1093 aa13.8□□□□□ -0.2
CLN3-261ENST00000637686 NUTM2GQ5VZR2 741 aa13.8□□□□□ -0.2
CLN3-261ENST00000637686 NGLY1Q96IV0 654 aa13.8□□□□□ -0.2
CLN3-261ENST00000637686 SLC12A5Q9H2X9 1139 aa13.8□□□□□ -0.2
CLN3-261ENST00000637686 EIF4G2P78344 907 aaKnown RBP eCLIP13.79□□□□□ -0.2
CLN3-261ENST00000637686 POTEAQ6S8J7 498 aa13.79□□□□□ -0.2
CLN3-261ENST00000637686 ZNF692Q9BU19 519 aaPredicted RBP13.79□□□□□ -0.2
CLN3-261ENST00000637686 AFF2P51816 1311 aa13.79□□□□□ -0.2
CLN3-261ENST00000637686 USP6P35125 1406 aa13.79□□□□□ -0.2
CLN3-261ENST00000637686 HSPA5P11021 654 aaKnown RBP13.78□□□□□ -0.2
CLN3-261ENST00000637686 ZNF772Q68DY9 489 aaPredicted RBP13.78□□□□□ -0.2
CLN3-261ENST00000637686 ABTB2Q8N961 1025 aa13.78□□□□□ -0.2
CLN3-261ENST00000637686 AKAP12Q02952 1782 aa13.76□□□□□ -0.21
CLN3-261ENST00000637686 CPSF1Q10570 1443 aaKnown RBP13.76□□□□□ -0.21
CLN3-261ENST00000637686 BRD4O60885 1362 aaPredicted RBP13.76□□□□□ -0.21
CLN3-261ENST00000637686 KTN1Q86UP2 1357 aaKnown RBP13.76□□□□□ -0.21
CLN3-261ENST00000637686 MARF1Q9Y4F3 1742 aaKnown RBP13.76□□□□□ -0.21
CLN3-261ENST00000637686 CD163L1Q9NR16 1453 aa13.75□□□□□ -0.21
CLN3-261ENST00000637686 SSH2Q76I76 1423 aa13.75□□□□□ -0.21
CLN3-261ENST00000637686 TTC21BQ7Z4L5 1316 aa13.75□□□□□ -0.21
CLN3-261ENST00000637686 CDCA8Q53HL2 280 aa13.75□□□□□ -0.21
CLN3-261ENST00000637686 HDGFL2Q7Z4V5 671 aaPredicted RBP13.75□□□□□ -0.21
CLN3-261ENST00000637686 FNBP4Q8N3X1 1017 aaPredicted RBP13.75□□□□□ -0.21
CLN3-261ENST00000637686 ABCA3Q99758 1704 aa13.75□□□□□ -0.21
CLN3-261ENST00000637686 TERF2IPQ9NYB0 399 aa13.74□□□□□ -0.21
CLN3-261ENST00000637686 USP21Q9UK80 565 aa13.74□□□□□ -0.21
CLN3-261ENST00000637686 NINLQ9Y2I6 1382 aa13.73□□□□□ -0.21
CLN3-261ENST00000637686 FAM83GA6ND36 823 aa13.73□□□□□ -0.21
CLN3-261ENST00000637686 NLRP13Q86W25 1043 aa13.73□□□□□ -0.21
CLN3-261ENST00000637686 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.73□□□□□ -0.21
CLN3-261ENST00000637686 QTRT2Q9H974 415 aaKnown RBP13.73□□□□□ -0.21
CLN3-261ENST00000637686 CRYBG1Q9Y4K1 1723 aa13.73□□□□□ -0.21
CLN3-261ENST00000637686 A0A1W2PP64 1363 aa13.72□□□□□ -0.21
CLN3-261ENST00000637686 NLRP6P59044 892 aa13.72□□□□□ -0.21
CLN3-261ENST00000637686 MON2Q7Z3U7 1717 aa13.72□□□□□ -0.21
CLN3-261ENST00000637686 TTC21AQ8NDW8 1320 aa13.71□□□□□ -0.21
CLN3-261ENST00000637686 ZC3H6P61129 1189 aaKnown RBP13.71□□□□□ -0.21
CLN3-261ENST00000637686 POLR3GLQ9BT43 218 aa13.71□□□□□ -0.21
CLN3-261ENST00000637686 NRKQ7Z2Y5 1582 aa13.71□□□□□ -0.22
CLN3-261ENST00000637686 SLIT2O94813 1529 aa13.7□□□□□ -0.22
CLN3-261ENST00000637686 USP19O94966 1318 aa13.7□□□□□ -0.22
CLN3-261ENST00000637686 PIK3C2AO00443 1686 aa13.7□□□□□ -0.22
CLN3-261ENST00000637686 BCL9LQ86UU0 1499 aa13.7□□□□□ -0.22
CLN3-261ENST00000637686 GCP02774 474 aa13.7□□□□□ -0.22
CLN3-261ENST00000637686 RXRBP28702 533 aa13.7□□□□□ -0.22
CLN3-261ENST00000637686 UNC5CLQ8IV45 518 aa13.7□□□□□ -0.22
CLN3-261ENST00000637686 PHRF1Q9P1Y6 1649 aaKnown RBP13.7□□□□□ -0.22
CLN3-261ENST00000637686 CHRNA2Q15822 529 aa13.69□□□□□ -0.22
CLN3-261ENST00000637686 NME9Q86XW9 330 aa13.69□□□□□ -0.22
CLN3-261ENST00000637686 PRDM11Q9NQV5 511 aa13.69□□□□□ -0.22
CLN3-261ENST00000637686 ZRANB1Q9UGI0 708 aa13.69□□□□□ -0.22
CLN3-261ENST00000637686 TRPC5Q9UL62 973 aaPredicted RBP13.69□□□□□ -0.22
CLN3-261ENST00000637686 EDC4Q6P2E9 1401 aaKnown RBP13.69□□□□□ -0.22
CLN3-261ENST00000637686 ANKRD36BQ8N2N9 1353 aa13.69□□□□□ -0.22
CLN3-261ENST00000637686 KIAA0232Q92628 1395 aa13.69□□□□□ -0.22
CLN3-261ENST00000637686 ATRNO75882 1429 aa13.68□□□□□ -0.22
CLN3-261ENST00000637686 C11orf95C9JLR9 678 aaPredicted RBP13.68□□□□□ -0.22
CLN3-261ENST00000637686 RBM6P78332 1123 aaKnown RBP13.67□□□□□ -0.22
CLN3-261ENST00000637686 BTG4Q9NY30 223 aa13.67□□□□□ -0.22
CLN3-261ENST00000637686 PLCH1Q4KWH8 1693 aa13.66□□□□□ -0.22
CLN3-261ENST00000637686 COL14A1Q05707 1796 aaKnown RBP13.66□□□□□ -0.22
CLN3-261ENST00000637686 SOX12O15370 315 aa13.66□□□□□ -0.22
CLN3-261ENST00000637686 SLIT3O75094 1523 aa13.65□□□□□ -0.22
CLN3-261ENST00000637686 NWD2Q9ULI1 1742 aa13.65□□□□□ -0.22
CLN3-261ENST00000637686 ZBTB7CA1YPR0 619 aa13.65□□□□□ -0.22
CLN3-261ENST00000637686 GJD4Q96KN9 370 aaPredicted RBP13.65□□□□□ -0.22
CLN3-261ENST00000637686 CPDO75976 1380 aa13.65□□□□□ -0.22
CLN3-261ENST00000637686 USP31Q70CQ4 1352 aa13.65□□□□□ -0.22
CLN3-261ENST00000637686 MYOM1P52179 1685 aa13.65□□□□□ -0.22
CLN3-261ENST00000637686 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.64□□□□□ -0.23
CLN3-261ENST00000637686 ZNF316A6NFI3 1004 aaPredicted RBP13.64□□□□□ -0.23
CLN3-261ENST00000637686 KCNH5Q8NCM2 988 aa13.64□□□□□ -0.23
CLN3-261ENST00000637686 CARD14Q9BXL6 1004 aa13.64□□□□□ -0.23
CLN3-261ENST00000637686 CCDC9Q9Y3X0 531 aaKnown RBP13.64□□□□□ -0.23
CLN3-261ENST00000637686 VPS72Q15906 364 aa13.63□□□□□ -0.23
CLN3-261ENST00000637686 SOCS7O14512 581 aa13.62□□□□□ -0.23
CLN3-261ENST00000637686 EVA1CP58658 441 aa13.62□□□□□ -0.23
CLN3-261ENST00000637686 STRN4Q9NRL3 753 aa13.62□□□□□ -0.23
CLN3-261ENST00000637686 NRAPQ86VF7 1730 aa13.61□□□□□ -0.23
CLN3-261ENST00000637686 USP54Q70EL1 1684 aa13.61□□□□□ -0.23
CLN3-261ENST00000637686 FYB1O15117 783 aa13.61□□□□□ -0.23
CLN3-261ENST00000637686 ARHGEF25Q86VW2 580 aa13.61□□□□□ -0.23
CLN3-261ENST00000637686 COG3Q96JB2 828 aa13.61□□□□□ -0.23
CLN3-261ENST00000637686 OVOS2A0A0J9YW53 1432 aa13.61□□□□□ -0.23
CLN3-261ENST00000637686 OVOS2Q6IE36 1432 aa13.61□□□□□ -0.23
CLN3-261ENST00000637686 NSD3Q9BZ95 1437 aa13.61□□□□□ -0.23
CLN3-261ENST00000637686 KIF7Q2M1P5 1343 aa13.61□□□□□ -0.23
CLN3-261ENST00000637686 CDK12Q9NYV4 1490 aaPredicted RBP13.61□□□□□ -0.23
CLN3-261ENST00000637686 NFAT5O94916 1531 aa13.6□□□□□ -0.23
CLN3-261ENST00000637686 CAMTA1Q9Y6Y1 1673 aa13.6□□□□□ -0.23
CLN3-261ENST00000637686 RGS12O14924 1447 aa13.6□□□□□ -0.23
CLN3-261ENST00000637686 GGNBP2Q9H3C7 697 aa13.6□□□□□ -0.23
CLN3-261ENST00000637686 PANK3Q9H999 370 aa13.6□□□□□ -0.23
CLN3-261ENST00000637686 AATKQ6ZMQ8 1374 aa13.59□□□□□ -0.23
CLN3-261ENST00000637686 GLI3P10071 1580 aa13.59□□□□□ -0.23
CLN3-261ENST00000637686 AXIN2Q9Y2T1 843 aa13.59□□□□□ -0.23
CLN3-261ENST00000637686 LMO7Q8WWI1 1683 aa13.59□□□□□ -0.23
CLN3-261ENST00000637686 LARP1Q6PKG0 1096 aaKnown RBP13.58□□□□□ -0.24
CLN3-261ENST00000637686 SPATA31A5Q5VU36 1347 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms