RNA–Protein interactions for RNA: ENST00000623056.3

LDB3-209, Transcript of LIM domain binding 3, humanhuman

TSL 5 BASIC

Gene LDB3, Length 2,314 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-209ENST00000623056 EXOSC9Q06265 439 aaKnown RBP17.67■□□□□ 0.42
LDB3-209ENST00000623056 ADGRB2O60241 1585 aa17.67■□□□□ 0.42
LDB3-209ENST00000623056 UGGT1Q9NYU2 1555 aa17.67■□□□□ 0.42
LDB3-209ENST00000623056 U2AF1L5P0DN76 240 aaPredicted RBP17.66■□□□□ 0.42
LDB3-209ENST00000623056 PTMSP20962 102 aa17.66■□□□□ 0.42
LDB3-209ENST00000623056 U2AF1Q01081 240 aaKnown RBP eCLIP17.66■□□□□ 0.42
LDB3-209ENST00000623056 ATF7IPQ6VMQ6 1270 aa17.66■□□□□ 0.42
LDB3-209ENST00000623056 SSH1Q8WYL5 1049 aa17.66■□□□□ 0.42
LDB3-209ENST00000623056 CFAP74Q9C0B2 1584 aa17.66■□□□□ 0.42
LDB3-209ENST00000623056 RAPGEF3O95398 923 aa17.66■□□□□ 0.42
LDB3-209ENST00000623056 NUCB1Q02818 461 aa17.65■□□□□ 0.42
LDB3-209ENST00000623056 USP32Q8NFA0 1604 aa17.65■□□□□ 0.42
LDB3-209ENST00000623056 ZBTB40Q9NUA8 1239 aa17.65■□□□□ 0.42
LDB3-209ENST00000623056 TMEM57Q8N5G2 664 aa17.64■□□□□ 0.41
LDB3-209ENST00000623056 IFT172Q9UG01 1749 aa17.64■□□□□ 0.41
LDB3-209ENST00000623056 CCDC173Q0VFZ6 552 aa17.64■□□□□ 0.41
LDB3-209ENST00000623056 KIF2CQ99661 725 aa17.64■□□□□ 0.41
LDB3-209ENST00000623056 NOB1Q9ULX3 412 aaKnown RBP17.64■□□□□ 0.41
LDB3-209ENST00000623056 VWDEQ8N2E2 1590 aa17.63■□□□□ 0.41
LDB3-209ENST00000623056 LNPKQ9C0E8 428 aa17.63■□□□□ 0.41
LDB3-209ENST00000623056 NRXN1Q9ULB1 1477 aa17.63■□□□□ 0.41
LDB3-209ENST00000623056 MROH1Q8NDA8 1641 aa17.63■□□□□ 0.41
LDB3-209ENST00000623056 PPP1R9BQ96SB3 815 aa17.63■□□□□ 0.41
LDB3-209ENST00000623056 CD2BP2O95400 341 aaKnown RBP17.62■□□□□ 0.41
LDB3-209ENST00000623056 FOXD4L1Q9NU39 408 aa17.62■□□□□ 0.41
LDB3-209ENST00000623056 KIF1BO60333 1816 aa17.62■□□□□ 0.41
LDB3-209ENST00000623056 ZC3H13Q5T200 1668 aaKnown RBP17.62■□□□□ 0.41
LDB3-209ENST00000623056 KIAA1211Q6ZU35 1233 aa17.61■□□□□ 0.41
LDB3-209ENST00000623056 CHD1LQ86WJ1 897 aa17.61■□□□□ 0.41
LDB3-209ENST00000623056 TRAK1Q9UPV9 953 aa17.61■□□□□ 0.41
LDB3-209ENST00000623056 NASPP49321 788 aaPredicted RBP17.6■□□□□ 0.41
LDB3-209ENST00000623056 BMP2KLQ5H9B9 411 aa17.6■□□□□ 0.41
LDB3-209ENST00000623056 QRICH2Q9H0J4 1663 aa17.6■□□□□ 0.41
LDB3-209ENST00000623056 NOS1P29475 1434 aa17.6■□□□□ 0.41
LDB3-209ENST00000623056 MROH2AA6NES4 1674 aa17.6■□□□□ 0.41
LDB3-209ENST00000623056 K7ELQ4 463 aaPredicted RBP17.6■□□□□ 0.41
LDB3-209ENST00000623056 PDCL3Q9H2J4 239 aa17.6■□□□□ 0.41
LDB3-209ENST00000623056 HECW2Q9P2P5 1572 aa17.6■□□□□ 0.41
LDB3-209ENST00000623056 SETBP1Q9Y6X0 1596 aa17.59■□□□□ 0.41
LDB3-209ENST00000623056 SSFA2P28290 1259 aa17.59■□□□□ 0.41
LDB3-209ENST00000623056 ZSCAN30Q86W11 494 aa17.59■□□□□ 0.41
LDB3-209ENST00000623056 NEO1Q92859 1461 aa17.59■□□□□ 0.41
LDB3-209ENST00000623056 FRMPD1Q5SYB0 1578 aa17.59■□□□□ 0.41
LDB3-209ENST00000623056 TRIM35Q9UPQ4 493 aa17.59■□□□□ 0.41
LDB3-209ENST00000623056 MLH3Q9UHC1 1453 aa17.58■□□□□ 0.41
LDB3-209ENST00000623056 TMPOP42166 694 aaKnown RBP17.58■□□□□ 0.4
LDB3-209ENST00000623056 FAM69CQ0P6D2 419 aa17.58■□□□□ 0.4
LDB3-209ENST00000623056 ABCC11Q96J66 1382 aa17.57■□□□□ 0.4
LDB3-209ENST00000623056 PLEKHF1Q96S99 279 aa17.57■□□□□ 0.4
LDB3-209ENST00000623056 IBTKQ9P2D0 1353 aaPredicted RBP17.57■□□□□ 0.4
LDB3-209ENST00000623056 KIF16BQ96L93 1317 aa17.57■□□□□ 0.4
LDB3-209ENST00000623056 GOLGA6L22H0YM25 854 aa17.56■□□□□ 0.4
LDB3-209ENST00000623056 GGT6Q6P531 493 aa17.56■□□□□ 0.4
LDB3-209ENST00000623056 CLEC17AQ6ZS10 378 aa17.56■□□□□ 0.4
LDB3-209ENST00000623056 GAS2L2Q8NHY3 880 aa17.56■□□□□ 0.4
LDB3-209ENST00000623056 RBM42Q9BTD8 480 aaKnown RBP17.56■□□□□ 0.4
LDB3-209ENST00000623056 OFD1O75665 1012 aa17.56■□□□□ 0.4
LDB3-209ENST00000623056 KLHL40Q2TBA0 621 aa17.56■□□□□ 0.4
LDB3-209ENST00000623056 ANP32BQ92688 251 aaKnown RBP17.56■□□□□ 0.4
LDB3-209ENST00000623056 KIF13AQ9H1H9 1805 aa17.55■□□□□ 0.4
LDB3-209ENST00000623056 IPO8O15397 1037 aaKnown RBP17.55■□□□□ 0.4
LDB3-209ENST00000623056 DDX49Q9Y6V7 483 aaKnown RBP17.55■□□□□ 0.4
LDB3-209ENST00000623056 NSD2O96028 1365 aa17.55■□□□□ 0.4
LDB3-209ENST00000623056 TBC1D9Q6ZT07 1266 aa17.55■□□□□ 0.4
LDB3-209ENST00000623056 IL16Q14005 1332 aa17.55■□□□□ 0.4
LDB3-209ENST00000623056 U2SURPO15042 1029 aaKnown RBP17.54■□□□□ 0.4
LDB3-209ENST00000623056 BAG4O95429 457 aaKnown RBP17.54■□□□□ 0.4
LDB3-209ENST00000623056 MSNP26038 577 aaKnown RBP17.53■□□□□ 0.4
LDB3-209ENST00000623056 ANKRD45Q5TZF3 282 aa17.53■□□□□ 0.4
LDB3-209ENST00000623056 ANKRD36BQ8N2N9 1353 aa17.53■□□□□ 0.4
LDB3-209ENST00000623056 PPRC1Q5VV67 1664 aaKnown RBP17.53■□□□□ 0.4
LDB3-209ENST00000623056 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.53■□□□□ 0.4
LDB3-209ENST00000623056 DIP2BQ9P265 1576 aa17.53■□□□□ 0.4
LDB3-209ENST00000623056 EFCAB6Q5THR3 1501 aa17.52■□□□□ 0.4
LDB3-209ENST00000623056 ADGRB1O14514 1584 aa17.52■□□□□ 0.4
LDB3-209ENST00000623056 C14orf93Q9H972 538 aaKnown RBP17.52■□□□□ 0.4
LDB3-209ENST00000623056 GLI2P10070 1586 aa17.52■□□□□ 0.39
LDB3-209ENST00000623056 ARHGAP31Q2M1Z3 1444 aa17.51■□□□□ 0.39
LDB3-209ENST00000623056 PPIP5K1Q6PFW1 1433 aa17.51■□□□□ 0.39
LDB3-209ENST00000623056 RICTORQ6R327 1708 aa17.51■□□□□ 0.39
LDB3-209ENST00000623056 TMEM132EQ6IEE7 984 aa17.51■□□□□ 0.39
LDB3-209ENST00000623056 YEATS2Q9ULM3 1422 aa17.51■□□□□ 0.39
LDB3-209ENST00000623056 ADGRB3O60242 1522 aa17.51■□□□□ 0.39
LDB3-209ENST00000623056 RIPK4P57078 832 aa17.5■□□□□ 0.39
LDB3-209ENST00000623056 ZNF445P59923 1031 aa17.5■□□□□ 0.39
LDB3-209ENST00000623056 ALDH1L2Q3SY69 923 aa17.5■□□□□ 0.39
LDB3-209ENST00000623056 GCC1Q96CN9 775 aa17.5■□□□□ 0.39
LDB3-209ENST00000623056 MED14O60244 1454 aa17.5■□□□□ 0.39
LDB3-209ENST00000623056 DIP2CQ9Y2E4 1556 aa17.5■□□□□ 0.39
LDB3-209ENST00000623056 TERF1P54274 439 aa17.5■□□□□ 0.39
LDB3-209ENST00000623056 CHGAP10645 457 aaKnown RBP17.49■□□□□ 0.39
LDB3-209ENST00000623056 TSPOAP1O95153 1857 aa17.49■□□□□ 0.39
LDB3-209ENST00000623056 COL3A1P02461 1466 aaPredicted RBP17.49■□□□□ 0.39
LDB3-209ENST00000623056 AK9Q5TCS8 1911 aa17.48■□□□□ 0.39
LDB3-209ENST00000623056 HS1BP3Q53T59 392 aa17.48■□□□□ 0.39
LDB3-209ENST00000623056 C1orf115Q9H7X2 142 aa17.48■□□□□ 0.39
LDB3-209ENST00000623056 TULP4Q9NRJ4 1543 aa17.47■□□□□ 0.39
LDB3-209ENST00000623056 EVC2Q86UK5 1308 aa17.47■□□□□ 0.39
LDB3-209ENST00000623056 ZBTB7BO15156 539 aaPredicted RBP17.47■□□□□ 0.39
LDB3-209ENST00000623056 MCTP1Q6DN14 999 aa17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms