RNA–Protein interactions for RNA: ENST00000618856.1

NEK3-209, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-209ENST00000618856 USP6P35125 1406 aa11.67□□□□□ -0.54
NEK3-209ENST00000618856 AKAP12Q02952 1782 aa11.67□□□□□ -0.54
NEK3-209ENST00000618856 NUTM2BA6NNL0 878 aaPredicted RBP11.66□□□□□ -0.54
NEK3-209ENST00000618856 NUTM2EB1AL46 878 aaPredicted RBP11.66□□□□□ -0.54
NEK3-209ENST00000618856 POTEAQ6S8J7 498 aa11.66□□□□□ -0.54
NEK3-209ENST00000618856 NUTM2AQ8IVF1 878 aaPredicted RBP11.66□□□□□ -0.54
NEK3-209ENST00000618856 NRKQ7Z2Y5 1582 aa11.66□□□□□ -0.54
NEK3-209ENST00000618856 ZNF772Q68DY9 489 aaPredicted RBP11.65□□□□□ -0.54
NEK3-209ENST00000618856 ZNF692Q9BU19 519 aaPredicted RBP11.65□□□□□ -0.54
NEK3-209ENST00000618856 SLIT2O94813 1529 aa11.65□□□□□ -0.55
NEK3-209ENST00000618856 BCL9LQ86UU0 1499 aa11.64□□□□□ -0.55
NEK3-209ENST00000618856 AFF2P51816 1311 aa11.64□□□□□ -0.55
NEK3-209ENST00000618856 MON2Q7Z3U7 1717 aa11.64□□□□□ -0.55
NEK3-209ENST00000618856 NINLQ9Y2I6 1382 aa11.64□□□□□ -0.55
NEK3-209ENST00000618856 USP19O94966 1318 aa11.63□□□□□ -0.55
NEK3-209ENST00000618856 ADAMTS2O95450 1211 aa11.63□□□□□ -0.55
NEK3-209ENST00000618856 MEX3CQ5U5Q3 659 aaKnown RBP11.63□□□□□ -0.55
NEK3-209ENST00000618856 PHRF1Q9P1Y6 1649 aaKnown RBP11.63□□□□□ -0.55
NEK3-209ENST00000618856 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.63□□□□□ -0.55
NEK3-209ENST00000618856 CABLES1Q8TDN4 633 aa11.62□□□□□ -0.55
NEK3-209ENST00000618856 C8orf37Q96NL8 207 aa11.62□□□□□ -0.55
NEK3-209ENST00000618856 PIK3C2AO00443 1686 aa11.62□□□□□ -0.55
NEK3-209ENST00000618856 USP54Q70EL1 1684 aa11.62□□□□□ -0.55
NEK3-209ENST00000618856 ATRNO75882 1429 aa11.61□□□□□ -0.55
NEK3-209ENST00000618856 SLIT3O75094 1523 aa11.61□□□□□ -0.55
NEK3-209ENST00000618856 NWD2Q9ULI1 1742 aa11.61□□□□□ -0.55
NEK3-209ENST00000618856 TMF1P82094 1093 aa11.61□□□□□ -0.55
NEK3-209ENST00000618856 NGLY1Q96IV0 654 aa11.61□□□□□ -0.55
NEK3-209ENST00000618856 CDK12Q9NYV4 1490 aaPredicted RBP11.61□□□□□ -0.55
NEK3-209ENST00000618856 TTC21BQ7Z4L5 1316 aa11.6□□□□□ -0.55
NEK3-209ENST00000618856 TTC21AQ8NDW8 1320 aa11.6□□□□□ -0.55
NEK3-209ENST00000618856 CPDO75976 1380 aa11.6□□□□□ -0.55
NEK3-209ENST00000618856 USP31Q70CQ4 1352 aa11.6□□□□□ -0.55
NEK3-209ENST00000618856 PAK3O75914 559 aaPredicted RBP11.6□□□□□ -0.55
NEK3-209ENST00000618856 SLC12A5Q9H2X9 1139 aa11.6□□□□□ -0.55
NEK3-209ENST00000618856 COL14A1Q05707 1796 aaKnown RBP11.59□□□□□ -0.55
NEK3-209ENST00000618856 PLCH1Q4KWH8 1693 aa11.59□□□□□ -0.55
NEK3-209ENST00000618856 A0A1W2PP64 1363 aa11.59□□□□□ -0.55
NEK3-209ENST00000618856 KTN1Q86UP2 1357 aaKnown RBP11.59□□□□□ -0.55
NEK3-209ENST00000618856 FAM83GA6ND36 823 aa11.59□□□□□ -0.55
NEK3-209ENST00000618856 LMOD2Q6P5Q4 547 aa11.59□□□□□ -0.55
NEK3-209ENST00000618856 ABTB2Q8N961 1025 aa11.59□□□□□ -0.55
NEK3-209ENST00000618856 USP21Q9UK80 565 aa11.59□□□□□ -0.55
NEK3-209ENST00000618856 NRAPQ86VF7 1730 aa11.58□□□□□ -0.56
NEK3-209ENST00000618856 EIF4G2P78344 907 aaKnown RBP eCLIP11.58□□□□□ -0.56
NEK3-209ENST00000618856 CDCA8Q53HL2 280 aa11.58□□□□□ -0.56
NEK3-209ENST00000618856 NLRP13Q86W25 1043 aa11.58□□□□□ -0.56
NEK3-209ENST00000618856 EDC4Q6P2E9 1401 aaKnown RBP11.58□□□□□ -0.56
NEK3-209ENST00000618856 ANKRD36BQ8N2N9 1353 aa11.57□□□□□ -0.56
NEK3-209ENST00000618856 MYOM1P52179 1685 aa11.57□□□□□ -0.56
NEK3-209ENST00000618856 LMO7Q8WWI1 1683 aa11.57□□□□□ -0.56
NEK3-209ENST00000618856 SOCS7O14512 581 aa11.57□□□□□ -0.56
NEK3-209ENST00000618856 HSPA5P11021 654 aaKnown RBP11.57□□□□□ -0.56
NEK3-209ENST00000618856 UNC5CLQ8IV45 518 aa11.57□□□□□ -0.56
NEK3-209ENST00000618856 QTRT2Q9H974 415 aaKnown RBP11.57□□□□□ -0.56
NEK3-209ENST00000618856 TERF2IPQ9NYB0 399 aa11.57□□□□□ -0.56
NEK3-209ENST00000618856 TRPC5Q9UL62 973 aaPredicted RBP11.57□□□□□ -0.56
NEK3-209ENST00000618856 KIAA0232Q92628 1395 aa11.56□□□□□ -0.56
NEK3-209ENST00000618856 GCP02774 474 aa11.56□□□□□ -0.56
NEK3-209ENST00000618856 RXRBP28702 533 aa11.56□□□□□ -0.56
NEK3-209ENST00000618856 RBM6P78332 1123 aaKnown RBP11.56□□□□□ -0.56
NEK3-209ENST00000618856 NFAT5O94916 1531 aa11.55□□□□□ -0.56
NEK3-209ENST00000618856 GLI3P10071 1580 aa11.55□□□□□ -0.56
NEK3-209ENST00000618856 NLRP6P59044 892 aa11.55□□□□□ -0.56
NEK3-209ENST00000618856 VPS72Q15906 364 aa11.55□□□□□ -0.56
NEK3-209ENST00000618856 HDGFL2Q7Z4V5 671 aaPredicted RBP11.55□□□□□ -0.56
NEK3-209ENST00000618856 TMC1Q8TDI8 760 aa11.55□□□□□ -0.56
NEK3-209ENST00000618856 OVOS2A0A0J9YW53 1432 aa11.54□□□□□ -0.56
NEK3-209ENST00000618856 OVOS2Q6IE36 1432 aa11.54□□□□□ -0.56
NEK3-209ENST00000618856 ONECUT3O60422 494 aaPredicted RBP11.54□□□□□ -0.56
NEK3-209ENST00000618856 NUTM2GQ5VZR2 741 aa11.54□□□□□ -0.56
NEK3-209ENST00000618856 COL18A1P39060 1754 aa11.54□□□□□ -0.56
NEK3-209ENST00000618856 RGS12O14924 1447 aa11.53□□□□□ -0.56
NEK3-209ENST00000618856 HAP1P54257 671 aaPredicted RBP11.53□□□□□ -0.56
NEK3-209ENST00000618856 GJD4Q96KN9 370 aaPredicted RBP11.53□□□□□ -0.56
NEK3-209ENST00000618856 AATKQ6ZMQ8 1374 aa11.53□□□□□ -0.56
NEK3-209ENST00000618856 CAMTA1Q9Y6Y1 1673 aa11.52□□□□□ -0.56
NEK3-209ENST00000618856 ABCC6O95255 1503 aa11.52□□□□□ -0.57
NEK3-209ENST00000618856 C11orf95C9JLR9 678 aaPredicted RBP11.52□□□□□ -0.57
NEK3-209ENST00000618856 MAPK8IP2Q13387 824 aaPredicted RBP11.52□□□□□ -0.57
NEK3-209ENST00000618856 ARHGEF25Q86VW2 580 aa11.52□□□□□ -0.57
NEK3-209ENST00000618856 NME9Q86XW9 330 aa11.52□□□□□ -0.57
NEK3-209ENST00000618856 KCNH5Q8NCM2 988 aa11.52□□□□□ -0.57
NEK3-209ENST00000618856 PRDM11Q9NQV5 511 aa11.52□□□□□ -0.57
NEK3-209ENST00000618856 BTG4Q9NY30 223 aa11.52□□□□□ -0.57
NEK3-209ENST00000618856 ZC3H6P61129 1189 aaKnown RBP11.51□□□□□ -0.57
NEK3-209ENST00000618856 CARD14Q9BXL6 1004 aa11.51□□□□□ -0.57
NEK3-209ENST00000618856 ZRANB1Q9UGI0 708 aa11.51□□□□□ -0.57
NEK3-209ENST00000618856 PLEKHG5O94827 1062 aa11.5□□□□□ -0.57
NEK3-209ENST00000618856 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.5□□□□□ -0.57
NEK3-209ENST00000618856 SPATA31A5Q5VU36 1347 aa11.5□□□□□ -0.57
NEK3-209ENST00000618856 SPATA31A7Q8IWB4 1347 aa11.5□□□□□ -0.57
NEK3-209ENST00000618856 COL5A2P05997 1499 aaPredicted RBP11.5□□□□□ -0.57
NEK3-209ENST00000618856 FYB1O15117 783 aa11.49□□□□□ -0.57
NEK3-209ENST00000618856 CHRNA2Q15822 529 aa11.49□□□□□ -0.57
NEK3-209ENST00000618856 EP400Q96L91 3159 aa11.48□□□□□ -0.57
NEK3-209ENST00000618856 AXIN2Q9Y2T1 843 aa11.48□□□□□ -0.57
NEK3-209ENST00000618856 THSD7AQ9UPZ6 1657 aa11.47□□□□□ -0.57
NEK3-209ENST00000618856 SPATA31A1Q5TZJ5 1347 aa11.47□□□□□ -0.57
NEK3-209ENST00000618856 NSD3Q9BZ95 1437 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms