RNA–Protein interactions for RNA: ENST00000617930.1

CNOT3-209, Transcript of CCR4-NOT transcription complex subunit 3, humanhuman

TSL 2

Gene CNOT3, Length 2,047 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT3-209ENST00000617930 STRCP1A6NGW2 1772 aa23.19■■□□□ 1.3
CNOT3-209ENST00000617930 AKAP12Q02952 1782 aa23.19■■□□□ 1.3
CNOT3-209ENST00000617930 MON2Q7Z3U7 1717 aa23.18■■□□□ 1.3
CNOT3-209ENST00000617930 STRCQ7RTU9 1775 aa23.18■■□□□ 1.3
CNOT3-209ENST00000617930 TERF2IPQ9NYB0 399 aa23.18■■□□□ 1.3
CNOT3-209ENST00000617930 CCDC61Q9Y6R9 512 aa23.18■■□□□ 1.3
CNOT3-209ENST00000617930 B4GALNT3Q6L9W6 998 aa23.16■■□□□ 1.3
CNOT3-209ENST00000617930 SPINK5Q9NQ38 1064 aaPredicted RBP23.16■■□□□ 1.3
CNOT3-209ENST00000617930 FMN2Q9NZ56 1722 aa23.16■■□□□ 1.3
CNOT3-209ENST00000617930 ANKRD26Q9UPS8 1709 aa23.16■■□□□ 1.3
CNOT3-209ENST00000617930 KIF20BQ96Q89 1820 aa23.16■■□□□ 1.3
CNOT3-209ENST00000617930 ITSN1Q15811 1721 aa23.15■■□□□ 1.3
CNOT3-209ENST00000617930 RRP1P56182 461 aaKnown RBP23.15■■□□□ 1.3
CNOT3-209ENST00000617930 DUSP27Q5VZP5 1158 aa23.15■■□□□ 1.3
CNOT3-209ENST00000617930 HDGFL2Q7Z4V5 671 aaPredicted RBP23.15■■□□□ 1.3
CNOT3-209ENST00000617930 DMRT2Q9Y5R5 561 aa23.14■■□□□ 1.29
CNOT3-209ENST00000617930 NRKQ7Z2Y5 1582 aa23.13■■□□□ 1.29
CNOT3-209ENST00000617930 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.11■■□□□ 1.29
CNOT3-209ENST00000617930 TRMT2AQ8IZ69 625 aaKnown RBP23.1■■□□□ 1.29
CNOT3-209ENST00000617930 ZRANB1Q9UGI0 708 aa23.1■■□□□ 1.29
CNOT3-209ENST00000617930 ADGRL3Q9HAR2 1447 aa23.1■■□□□ 1.29
CNOT3-209ENST00000617930 ACEP12821 1306 aa23.1■■□□□ 1.29
CNOT3-209ENST00000617930 PLEKHG3A1L390 1219 aa23.09■■□□□ 1.29
CNOT3-209ENST00000617930 GOLGA2Q08379 1002 aa23.09■■□□□ 1.29
CNOT3-209ENST00000617930 SLFN5Q08AF3 891 aa23.09■■□□□ 1.29
CNOT3-209ENST00000617930 EDC4Q6P2E9 1401 aaKnown RBP23.09■■□□□ 1.29
CNOT3-209ENST00000617930 FBLN1P23142 703 aa23.08■■□□□ 1.28
CNOT3-209ENST00000617930 PMFBP1Q8TBY8 1022 aa23.08■■□□□ 1.28
CNOT3-209ENST00000617930 NME9Q86XW9 330 aa23.07■■□□□ 1.28
CNOT3-209ENST00000617930 COL3A1P02461 1466 aaPredicted RBP23.06■■□□□ 1.28
CNOT3-209ENST00000617930 PLIN1O60240 522 aa23.06■■□□□ 1.28
CNOT3-209ENST00000617930 SSH2Q76I76 1423 aa23.05■■□□□ 1.28
CNOT3-209ENST00000617930 ANKARQ7Z5J8 1434 aa23.05■■□□□ 1.28
CNOT3-209ENST00000617930 USP6P35125 1406 aa23.04■■□□□ 1.28
CNOT3-209ENST00000617930 IQSEC2Q5JU85 1478 aa23.04■■□□□ 1.28
CNOT3-209ENST00000617930 RUNDC1Q96C34 613 aa23.04■■□□□ 1.28
CNOT3-209ENST00000617930 CFAP53Q96M91 514 aa23.04■■□□□ 1.28
CNOT3-209ENST00000617930 EXOC6Q8TAG9 804 aa23.03■■□□□ 1.28
CNOT3-209ENST00000617930 RRP7AQ9Y3A4 280 aaKnown RBP23.03■■□□□ 1.28
CNOT3-209ENST00000617930 WWC1Q8IX03 1113 aa23.03■■□□□ 1.28
CNOT3-209ENST00000617930 TCP11L2Q8N4U5 519 aa23.02■■□□□ 1.28
CNOT3-209ENST00000617930 PHF23Q9BUL5 403 aaPredicted RBP23.01■■□□□ 1.27
CNOT3-209ENST00000617930 PROSER2Q86WR7 435 aaPredicted RBP23.01■■□□□ 1.27
CNOT3-209ENST00000617930 TTC21BQ7Z4L5 1316 aa23■■□□□ 1.27
CNOT3-209ENST00000617930 PNPLA6Q8IY17 1366 aa23■■□□□ 1.27
CNOT3-209ENST00000617930 U2AF1L5P0DN76 240 aaPredicted RBP22.99■■□□□ 1.27
CNOT3-209ENST00000617930 U2AF1Q01081 240 aaKnown RBP eCLIP22.99■■□□□ 1.27
CNOT3-209ENST00000617930 NEUROD2Q15784 382 aa22.99■■□□□ 1.27
CNOT3-209ENST00000617930 ZNF692Q9BU19 519 aaPredicted RBP22.99■■□□□ 1.27
CNOT3-209ENST00000617930 XIRP1Q702N8 1843 aaKnown RBP22.98■■□□□ 1.27
CNOT3-209ENST00000617930 POLKQ9UBT6 870 aa22.98■■□□□ 1.27
CNOT3-209ENST00000617930 TMEM94Q12767 1356 aa22.97■■□□□ 1.27
CNOT3-209ENST00000617930 C20orf194Q5TEA3 1177 aa22.97■■□□□ 1.27
CNOT3-209ENST00000617930 NGEFQ8N5V2 710 aa22.97■■□□□ 1.27
CNOT3-209ENST00000617930 PLEKHF1Q96S99 279 aa22.97■■□□□ 1.27
CNOT3-209ENST00000617930 OVOS2A0A0J9YW53 1432 aa22.95■■□□□ 1.26
CNOT3-209ENST00000617930 OVOS2Q6IE36 1432 aa22.95■■□□□ 1.26
CNOT3-209ENST00000617930 E9PSI1 815 aa22.95■■□□□ 1.26
CNOT3-209ENST00000617930 MAP2P11137 1827 aaKnown RBP22.95■■□□□ 1.26
CNOT3-209ENST00000617930 PIK3C2AO00443 1686 aa22.95■■□□□ 1.26
CNOT3-209ENST00000617930 C14orf37Q86TY3 774 aa22.94■■□□□ 1.26
CNOT3-209ENST00000617930 MARF1Q9Y4F3 1742 aaKnown RBP22.93■■□□□ 1.26
CNOT3-209ENST00000617930 U2SURPO15042 1029 aaKnown RBP22.93■■□□□ 1.26
CNOT3-209ENST00000617930 NGDNQ8NEJ9 315 aaKnown RBP22.93■■□□□ 1.26
CNOT3-209ENST00000617930 CCDC136Q96JN2 1154 aa22.93■■□□□ 1.26
CNOT3-209ENST00000617930 ZNF335Q9H4Z2 1342 aaPredicted RBP22.93■■□□□ 1.26
CNOT3-209ENST00000617930 ORAI2Q96SN7 254 aa22.92■■□□□ 1.26
CNOT3-209ENST00000617930 FANCIQ9NVI1 1328 aa22.92■■□□□ 1.26
CNOT3-209ENST00000617930 PHF8Q9UPP1 1060 aa22.91■■□□□ 1.26
CNOT3-209ENST00000617930 EMILIN1Q9Y6C2 1016 aa22.91■■□□□ 1.26
CNOT3-209ENST00000617930 DIAPH1O60610 1272 aaKnown RBP22.9■■□□□ 1.26
CNOT3-209ENST00000617930 CCDC27Q2M243 656 aa22.9■■□□□ 1.26
CNOT3-209ENST00000617930 CRBNQ96SW2 442 aa22.9■■□□□ 1.26
CNOT3-209ENST00000617930 C1orf167Q5SNV9 1468 aa22.89■■□□□ 1.25
CNOT3-209ENST00000617930 PPM1GO15355 546 aaPredicted RBP22.88■■□□□ 1.25
CNOT3-209ENST00000617930 BCAR3O75815 825 aa22.88■■□□□ 1.25
CNOT3-209ENST00000617930 ESCO1Q5FWF5 840 aa22.88■■□□□ 1.25
CNOT3-209ENST00000617930 COG3Q96JB2 828 aa22.88■■□□□ 1.25
CNOT3-209ENST00000617930 C19orf44Q9H6X5 657 aa22.88■■□□□ 1.25
CNOT3-209ENST00000617930 LRRC7Q96NW7 1537 aa22.87■■□□□ 1.25
CNOT3-209ENST00000617930 MST1RQ04912 1400 aa22.87■■□□□ 1.25
CNOT3-209ENST00000617930 RRS1Q15050 365 aaKnown RBP22.87■■□□□ 1.25
CNOT3-209ENST00000617930 AATKQ6ZMQ8 1374 aa22.86■■□□□ 1.25
CNOT3-209ENST00000617930 WDR63Q8IWG1 891 aa22.86■■□□□ 1.25
CNOT3-209ENST00000617930 PEAK1Q9H792 1746 aa22.85■■□□□ 1.25
CNOT3-209ENST00000617930 NCBP3Q53F19 620 aaKnown RBP22.85■■□□□ 1.25
CNOT3-209ENST00000617930 TRIM35Q9UPQ4 493 aa22.85■■□□□ 1.25
CNOT3-209ENST00000617930 TTC21AQ8NDW8 1320 aa22.85■■□□□ 1.25
CNOT3-209ENST00000617930 USP31Q70CQ4 1352 aa22.85■■□□□ 1.25
CNOT3-209ENST00000617930 TMPOP42166 694 aaKnown RBP22.84■■□□□ 1.25
CNOT3-209ENST00000617930 NCOA3Q9Y6Q9 1424 aa22.84■■□□□ 1.25
CNOT3-209ENST00000617930 MSH5O43196 834 aa22.83■■□□□ 1.25
CNOT3-209ENST00000617930 USP54Q70EL1 1684 aa22.83■■□□□ 1.24
CNOT3-209ENST00000617930 NUTM2GQ5VZR2 741 aa22.82■■□□□ 1.24
CNOT3-209ENST00000617930 IL13P35225 146 aa22.82■■□□□ 1.24
CNOT3-209ENST00000617930 DCCP43146 1447 aa22.82■■□□□ 1.24
CNOT3-209ENST00000617930 XPCQ01831 940 aaPredicted RBP22.81■■□□□ 1.24
CNOT3-209ENST00000617930 RSPH6AQ9H0K4 717 aa22.81■■□□□ 1.24
CNOT3-209ENST00000617930 CDK12Q9NYV4 1490 aaPredicted RBP22.8■■□□□ 1.24
CNOT3-209ENST00000617930 FOXO3O43524 673 aa22.8■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms