RNA–Protein interactions for RNA: ENST00000611848.1

SMAD4-217, Transcript of SMAD family member 4, humanhuman

TSL 5

Gene SMAD4, Length 1,648 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-217ENST00000611848 DISP3Q9P2K9 1392 aa12.26□□□□□ -0.45
SMAD4-217ENST00000611848 MED1Q15648 1581 aaPredicted RBP12.26□□□□□ -0.45
SMAD4-217ENST00000611848 TMC1Q8TDI8 760 aa12.26□□□□□ -0.45
SMAD4-217ENST00000611848 NINLQ9Y2I6 1382 aa12.25□□□□□ -0.45
SMAD4-217ENST00000611848 PAK3O75914 559 aaPredicted RBP12.25□□□□□ -0.45
SMAD4-217ENST00000611848 LMOD2Q6P5Q4 547 aa12.25□□□□□ -0.45
SMAD4-217ENST00000611848 AKAP12Q02952 1782 aa12.24□□□□□ -0.45
SMAD4-217ENST00000611848 NUTM2BA6NNL0 878 aaPredicted RBP12.24□□□□□ -0.45
SMAD4-217ENST00000611848 NUTM2EB1AL46 878 aaPredicted RBP12.24□□□□□ -0.45
SMAD4-217ENST00000611848 NUTM2AQ8IVF1 878 aaPredicted RBP12.24□□□□□ -0.45
SMAD4-217ENST00000611848 ALS2Q96Q42 1657 aa12.24□□□□□ -0.45
SMAD4-217ENST00000611848 USP6P35125 1406 aa12.24□□□□□ -0.45
SMAD4-217ENST00000611848 CPSF1Q10570 1443 aaKnown RBP12.24□□□□□ -0.45
SMAD4-217ENST00000611848 CENPBP07199 599 aaPredicted RBP12.23□□□□□ -0.45
SMAD4-217ENST00000611848 CNKSR2Q8WXI2 1034 aa12.23□□□□□ -0.45
SMAD4-217ENST00000611848 SLC12A5Q9H2X9 1139 aa12.23□□□□□ -0.45
SMAD4-217ENST00000611848 LRP6O75581 1613 aa12.23□□□□□ -0.45
SMAD4-217ENST00000611848 MEX3CQ5U5Q3 659 aaKnown RBP12.22□□□□□ -0.45
SMAD4-217ENST00000611848 HDGFL2Q7Z4V5 671 aaPredicted RBP12.22□□□□□ -0.45
SMAD4-217ENST00000611848 TERF2IPQ9NYB0 399 aa12.22□□□□□ -0.45
SMAD4-217ENST00000611848 KTN1Q86UP2 1357 aaKnown RBP12.22□□□□□ -0.45
SMAD4-217ENST00000611848 SSH2Q76I76 1423 aa12.22□□□□□ -0.45
SMAD4-217ENST00000611848 ABTB2Q8N961 1025 aa12.21□□□□□ -0.46
SMAD4-217ENST00000611848 CD163L1Q9NR16 1453 aa12.21□□□□□ -0.46
SMAD4-217ENST00000611848 MON2Q7Z3U7 1717 aa12.21□□□□□ -0.46
SMAD4-217ENST00000611848 TTC21AQ8NDW8 1320 aa12.2□□□□□ -0.46
SMAD4-217ENST00000611848 A0A1W2PP64 1363 aa12.19□□□□□ -0.46
SMAD4-217ENST00000611848 TTC21BQ7Z4L5 1316 aa12.19□□□□□ -0.46
SMAD4-217ENST00000611848 HAP1P54257 671 aaPredicted RBP12.19□□□□□ -0.46
SMAD4-217ENST00000611848 MARF1Q9Y4F3 1742 aaKnown RBP12.19□□□□□ -0.46
SMAD4-217ENST00000611848 ANKRD36BQ8N2N9 1353 aa12.19□□□□□ -0.46
SMAD4-217ENST00000611848 ADAMTS2O95450 1211 aa12.19□□□□□ -0.46
SMAD4-217ENST00000611848 NLRP13Q86W25 1043 aa12.19□□□□□ -0.46
SMAD4-217ENST00000611848 CABLES1Q8TDN4 633 aa12.19□□□□□ -0.46
SMAD4-217ENST00000611848 ABCA3Q99758 1704 aa12.18□□□□□ -0.46
SMAD4-217ENST00000611848 MAPK8IP2Q13387 824 aaPredicted RBP12.18□□□□□ -0.46
SMAD4-217ENST00000611848 NRKQ7Z2Y5 1582 aa12.18□□□□□ -0.46
SMAD4-217ENST00000611848 EDC4Q6P2E9 1401 aaKnown RBP12.17□□□□□ -0.46
SMAD4-217ENST00000611848 ZBTB22O15209 634 aa12.17□□□□□ -0.46
SMAD4-217ENST00000611848 NLRP6P59044 892 aa12.17□□□□□ -0.46
SMAD4-217ENST00000611848 NUTM2GQ5VZR2 741 aa12.17□□□□□ -0.46
SMAD4-217ENST00000611848 C8orf37Q96NL8 207 aa12.17□□□□□ -0.46
SMAD4-217ENST00000611848 POLR3GLQ9BT43 218 aa12.17□□□□□ -0.46
SMAD4-217ENST00000611848 PLEKHG5O94827 1062 aa12.16□□□□□ -0.46
SMAD4-217ENST00000611848 ZNF772Q68DY9 489 aaPredicted RBP12.16□□□□□ -0.46
SMAD4-217ENST00000611848 NGLY1Q96IV0 654 aa12.16□□□□□ -0.46
SMAD4-217ENST00000611848 CRYBG1Q9Y4K1 1723 aa12.16□□□□□ -0.46
SMAD4-217ENST00000611848 MYOM1P52179 1685 aa12.16□□□□□ -0.46
SMAD4-217ENST00000611848 USP19O94966 1318 aa12.16□□□□□ -0.46
SMAD4-217ENST00000611848 PIK3C2AO00443 1686 aa12.15□□□□□ -0.46
SMAD4-217ENST00000611848 C11orf95C9JLR9 678 aaPredicted RBP12.15□□□□□ -0.46
SMAD4-217ENST00000611848 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.15□□□□□ -0.46
SMAD4-217ENST00000611848 AFF2P51816 1311 aa12.15□□□□□ -0.46
SMAD4-217ENST00000611848 PHRF1Q9P1Y6 1649 aaKnown RBP12.15□□□□□ -0.47
SMAD4-217ENST00000611848 FNBP4Q8N3X1 1017 aaPredicted RBP12.15□□□□□ -0.47
SMAD4-217ENST00000611848 RGS17Q9UGC6 210 aaPredicted RBP12.15□□□□□ -0.47
SMAD4-217ENST00000611848 USP31Q70CQ4 1352 aa12.14□□□□□ -0.47
SMAD4-217ENST00000611848 KIF7Q2M1P5 1343 aa12.13□□□□□ -0.47
SMAD4-217ENST00000611848 GCP02774 474 aa12.13□□□□□ -0.47
SMAD4-217ENST00000611848 USP54Q70EL1 1684 aa12.12□□□□□ -0.47
SMAD4-217ENST00000611848 SLIT3O75094 1523 aa12.12□□□□□ -0.47
SMAD4-217ENST00000611848 NME9Q86XW9 330 aa12.12□□□□□ -0.47
SMAD4-217ENST00000611848 KCNH5Q8NCM2 988 aa12.12□□□□□ -0.47
SMAD4-217ENST00000611848 FAM83GA6ND36 823 aa12.11□□□□□ -0.47
SMAD4-217ENST00000611848 PRDM11Q9NQV5 511 aa12.11□□□□□ -0.47
SMAD4-217ENST00000611848 USP21Q9UK80 565 aa12.11□□□□□ -0.47
SMAD4-217ENST00000611848 SLIT2O94813 1529 aa12.11□□□□□ -0.47
SMAD4-217ENST00000611848 NWD2Q9ULI1 1742 aa12.11□□□□□ -0.47
SMAD4-217ENST00000611848 ZC3H6P61129 1189 aaKnown RBP12.11□□□□□ -0.47
SMAD4-217ENST00000611848 CPDO75976 1380 aa12.11□□□□□ -0.47
SMAD4-217ENST00000611848 KIAA0232Q92628 1395 aa12.11□□□□□ -0.47
SMAD4-217ENST00000611848 COL14A1Q05707 1796 aaKnown RBP12.11□□□□□ -0.47
SMAD4-217ENST00000611848 POTEAQ6S8J7 498 aa12.1□□□□□ -0.47
SMAD4-217ENST00000611848 UNC5CLQ8IV45 518 aa12.1□□□□□ -0.47
SMAD4-217ENST00000611848 COG3Q96JB2 828 aa12.1□□□□□ -0.47
SMAD4-217ENST00000611848 CARD14Q9BXL6 1004 aa12.1□□□□□ -0.47
SMAD4-217ENST00000611848 PANK3Q9H999 370 aa12.1□□□□□ -0.47
SMAD4-217ENST00000611848 ZRANB1Q9UGI0 708 aa12.1□□□□□ -0.47
SMAD4-217ENST00000611848 NSD3Q9BZ95 1437 aa12.1□□□□□ -0.47
SMAD4-217ENST00000611848 BCL9LQ86UU0 1499 aa12.09□□□□□ -0.47
SMAD4-217ENST00000611848 CCDC7Q96M83 1385 aa12.09□□□□□ -0.47
SMAD4-217ENST00000611848 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.09□□□□□ -0.47
SMAD4-217ENST00000611848 FYB1O15117 783 aa12.09□□□□□ -0.47
SMAD4-217ENST00000611848 YTHDC1Q96MU7 727 aaKnown RBP12.09□□□□□ -0.47
SMAD4-217ENST00000611848 QTRT2Q9H974 415 aaKnown RBP12.09□□□□□ -0.47
SMAD4-217ENST00000611848 TRPC5Q9UL62 973 aaPredicted RBP12.09□□□□□ -0.47
SMAD4-217ENST00000611848 OVOS2A0A0J9YW53 1432 aa12.09□□□□□ -0.47
SMAD4-217ENST00000611848 OVOS2Q6IE36 1432 aa12.09□□□□□ -0.47
SMAD4-217ENST00000611848 PLCH1Q4KWH8 1693 aa12.09□□□□□ -0.47
SMAD4-217ENST00000611848 KIF20BQ96Q89 1820 aa12.08□□□□□ -0.48
SMAD4-217ENST00000611848 CGNL1Q0VF96 1302 aa12.08□□□□□ -0.48
SMAD4-217ENST00000611848 WASHC2AQ641Q2 1341 aa12.08□□□□□ -0.48
SMAD4-217ENST00000611848 DDX10Q13206 875 aaKnown RBP12.08□□□□□ -0.48
SMAD4-217ENST00000611848 BTG4Q9NY30 223 aa12.08□□□□□ -0.48
SMAD4-217ENST00000611848 ATRNO75882 1429 aa12.07□□□□□ -0.48
SMAD4-217ENST00000611848 CHRNA2Q15822 529 aa12.07□□□□□ -0.48
SMAD4-217ENST00000611848 ARHGEF25Q86VW2 580 aa12.07□□□□□ -0.48
SMAD4-217ENST00000611848 GGNBP2Q9H3C7 697 aa12.07□□□□□ -0.48
SMAD4-217ENST00000611848 NFAT5O94916 1531 aa12.06□□□□□ -0.48
SMAD4-217ENST00000611848 SOX12O15370 315 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms