RNA–Protein interactions for RNA: ENST00000611833.4

NEK3-206, Transcript of NIMA related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene NEK3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-206ENST00000611833 CABP1Q9NZU7 370 aa22.17■■□□□ 1.14
NEK3-206ENST00000611833 BCL2L13Q9BXK5 485 aa22.16■■□□□ 1.14
NEK3-206ENST00000611833 SETD1AO15047 1707 aaKnown RBP22.16■■□□□ 1.14
NEK3-206ENST00000611833 NEFMP07197 916 aa22.15■■□□□ 1.14
NEK3-206ENST00000611833 HDGFL2Q7Z4V5 671 aaPredicted RBP22.15■■□□□ 1.14
NEK3-206ENST00000611833 RIMS2Q9UQ26 1411 aa22.15■■□□□ 1.14
NEK3-206ENST00000611833 DLC1Q96QB1 1528 aa22.14■■□□□ 1.14
NEK3-206ENST00000611833 MLECQ14165 292 aa22.14■■□□□ 1.14
NEK3-206ENST00000611833 TNNQ9UQP3 1299 aa22.14■■□□□ 1.13
NEK3-206ENST00000611833 AAMPQ13685 434 aa22.13■■□□□ 1.13
NEK3-206ENST00000611833 WAPLQ7Z5K2 1190 aa22.13■■□□□ 1.13
NEK3-206ENST00000611833 KIF20BQ96Q89 1820 aa22.13■■□□□ 1.13
NEK3-206ENST00000611833 RLBP1P12271 317 aa22.13■■□□□ 1.13
NEK3-206ENST00000611833 TMPOP42166 694 aaKnown RBP22.12■■□□□ 1.13
NEK3-206ENST00000611833 PMFBP1Q8TBY8 1022 aa22.12■■□□□ 1.13
NEK3-206ENST00000611833 USP35Q9P2H5 1018 aa22.12■■□□□ 1.13
NEK3-206ENST00000611833 MAPK8IP3Q9UPT6 1336 aa22.11■■□□□ 1.13
NEK3-206ENST00000611833 PNPLA6Q8IY17 1366 aa22.1■■□□□ 1.13
NEK3-206ENST00000611833 SLC4A3P48751 1232 aa22.1■■□□□ 1.13
NEK3-206ENST00000611833 TRIM35Q9UPQ4 493 aa22.1■■□□□ 1.13
NEK3-206ENST00000611833 TSR2Q969E8 191 aaKnown RBP22.09■■□□□ 1.13
NEK3-206ENST00000611833 DIAPH1O60610 1272 aaKnown RBP22.08■■□□□ 1.13
NEK3-206ENST00000611833 NRXN3Q9Y4C0 1643 aa22.08■■□□□ 1.13
NEK3-206ENST00000611833 ATP7BP35670 1465 aa22.07■■□□□ 1.12
NEK3-206ENST00000611833 PCDHB15Q9Y5E8 787 aa22.07■■□□□ 1.12
NEK3-206ENST00000611833 CT47B1P0C2W7 299 aaPredicted RBP22.06■■□□□ 1.12
NEK3-206ENST00000611833 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.06■■□□□ 1.12
NEK3-206ENST00000611833 ZKSCAN2Q63HK3 967 aa22.06■■□□□ 1.12
NEK3-206ENST00000611833 FTSJ3Q8IY81 847 aaKnown RBP22.05■■□□□ 1.12
NEK3-206ENST00000611833 FBLN1P23142 703 aa22.04■■□□□ 1.12
NEK3-206ENST00000611833 EXOSC9Q06265 439 aaKnown RBP22.04■■□□□ 1.12
NEK3-206ENST00000611833 RWDD1Q9H446 243 aaPredicted RBP22.03■■□□□ 1.12
NEK3-206ENST00000611833 METP08581 1390 aa22.03■■□□□ 1.12
NEK3-206ENST00000611833 RIPK4P57078 832 aa22.03■■□□□ 1.12
NEK3-206ENST00000611833 MVPQ14764 893 aaKnown RBP22.03■■□□□ 1.12
NEK3-206ENST00000611833 PNNQ9H307 717 aaKnown RBP22.03■■□□□ 1.12
NEK3-206ENST00000611833 CDC42BPGQ6DT37 1551 aa22.03■■□□□ 1.12
NEK3-206ENST00000611833 SMC4Q9NTJ3 1288 aa22.02■■□□□ 1.12
NEK3-206ENST00000611833 VIRMAQ69YN4 1812 aaKnown RBP22.02■■□□□ 1.12
NEK3-206ENST00000611833 ZMYM3Q14202 1370 aa22.02■■□□□ 1.12
NEK3-206ENST00000611833 DZIP1LQ8IYY4 767 aaKnown RBP22.02■■□□□ 1.12
NEK3-206ENST00000611833 POLKQ9UBT6 870 aa22.02■■□□□ 1.12
NEK3-206ENST00000611833 LRRC7Q96NW7 1537 aa22.01■■□□□ 1.11
NEK3-206ENST00000611833 KIF13AQ9H1H9 1805 aa22.01■■□□□ 1.11
NEK3-206ENST00000611833 IL16Q14005 1332 aa22.01■■□□□ 1.11
NEK3-206ENST00000611833 WASLO00401 505 aaPredicted RBP22■■□□□ 1.11
NEK3-206ENST00000611833 CPSF1Q10570 1443 aaKnown RBP22■■□□□ 1.11
NEK3-206ENST00000611833 ABCF1Q8NE71 845 aaKnown RBP eCLIP22■■□□□ 1.11
NEK3-206ENST00000611833 PPIP5K1Q6PFW1 1433 aa21.99■■□□□ 1.11
NEK3-206ENST00000611833 MAP2P11137 1827 aaKnown RBP21.99■■□□□ 1.11
NEK3-206ENST00000611833 FCHSD2O94868 740 aa21.98■■□□□ 1.11
NEK3-206ENST00000611833 PDZRN3Q9UPQ7 1066 aa21.98■■□□□ 1.11
NEK3-206ENST00000611833 TXNDC2Q86VQ3 553 aa21.98■■□□□ 1.11
NEK3-206ENST00000611833 SSH1Q8WYL5 1049 aa21.98■■□□□ 1.11
NEK3-206ENST00000611833 RSPH6AQ9H0K4 717 aa21.97■■□□□ 1.11
NEK3-206ENST00000611833 ESF1Q9H501 851 aaKnown RBP21.97■■□□□ 1.11
NEK3-206ENST00000611833 EDC4Q6P2E9 1401 aaKnown RBP21.97■■□□□ 1.11
NEK3-206ENST00000611833 FAM135BQ49AJ0 1406 aa21.97■■□□□ 1.11
NEK3-206ENST00000611833 TRIM27P14373 513 aa21.96■■□□□ 1.11
NEK3-206ENST00000611833 PRKAR2BP31323 418 aa21.96■■□□□ 1.11
NEK3-206ENST00000611833 KNDC1Q76NI1 1749 aa21.95■■□□□ 1.1
NEK3-206ENST00000611833 SEC24BO95487 1268 aa21.95■■□□□ 1.1
NEK3-206ENST00000611833 NFKBIBQ15653 356 aa21.95■■□□□ 1.1
NEK3-206ENST00000611833 USP19O94966 1318 aa21.95■■□□□ 1.1
NEK3-206ENST00000611833 NME9Q86XW9 330 aa21.95■■□□□ 1.1
NEK3-206ENST00000611833 NCKAP5LQ9HCH0 1330 aa21.94■■□□□ 1.1
NEK3-206ENST00000611833 EMILIN1Q9Y6C2 1016 aa21.94■■□□□ 1.1
NEK3-206ENST00000611833 TECPR2O15040 1411 aa21.93■■□□□ 1.1
NEK3-206ENST00000611833 ATF7IPQ6VMQ6 1270 aa21.93■■□□□ 1.1
NEK3-206ENST00000611833 ITPRIPQ8IWB1 547 aa21.93■■□□□ 1.1
NEK3-206ENST00000611833 NUDT16Q96DE0 195 aaKnown RBP21.93■■□□□ 1.1
NEK3-206ENST00000611833 ZRANB1Q9UGI0 708 aa21.93■■□□□ 1.1
NEK3-206ENST00000611833 NOB1Q9ULX3 412 aaKnown RBP21.92■■□□□ 1.1
NEK3-206ENST00000611833 DDX19BQ9UMR2 479 aa21.92■■□□□ 1.1
NEK3-206ENST00000611833 TNRQ92752 1358 aa21.92■■□□□ 1.1
NEK3-206ENST00000611833 HMOX1P09601 288 aa21.91■■□□□ 1.1
NEK3-206ENST00000611833 CPS1P31327 1500 aa21.91■■□□□ 1.1
NEK3-206ENST00000611833 MON2Q7Z3U7 1717 aa21.91■■□□□ 1.1
NEK3-206ENST00000611833 SIRT1Q96EB6 747 aa21.91■■□□□ 1.1
NEK3-206ENST00000611833 PHACTR3Q96KR7 559 aa21.91■■□□□ 1.1
NEK3-206ENST00000611833 UPF2Q9HAU5 1272 aaKnown RBP21.91■■□□□ 1.1
NEK3-206ENST00000611833 HDGFP51858 240 aaKnown RBP21.9■■□□□ 1.1
NEK3-206ENST00000611833 CCDC61Q9Y6R9 512 aa21.9■■□□□ 1.1
NEK3-206ENST00000611833 CDK12Q9NYV4 1490 aaPredicted RBP21.9■■□□□ 1.1
NEK3-206ENST00000611833 UBR1Q8IWV7 1749 aa21.89■■□□□ 1.1
NEK3-206ENST00000611833 IL13P35225 146 aa21.89■■□□□ 1.1
NEK3-206ENST00000611833 IPO8O15397 1037 aaKnown RBP21.89■■□□□ 1.09
NEK3-206ENST00000611833 AATKQ6ZMQ8 1374 aa21.89■■□□□ 1.09
NEK3-206ENST00000611833 KIF16BQ96L93 1317 aa21.88■■□□□ 1.09
NEK3-206ENST00000611833 TMEM2Q9UHN6 1383 aa21.88■■□□□ 1.09
NEK3-206ENST00000611833 BECN1Q14457 450 aa21.88■■□□□ 1.09
NEK3-206ENST00000611833 NFE2L2Q16236 605 aa21.88■■□□□ 1.09
NEK3-206ENST00000611833 AKAP12Q02952 1782 aa21.87■■□□□ 1.09
NEK3-206ENST00000611833 PRR36Q9H6K5 1346 aa21.86■■□□□ 1.09
NEK3-206ENST00000611833 C3P01024 1663 aa21.86■■□□□ 1.09
NEK3-206ENST00000611833 HDAC1Q13547 482 aaPredicted RBP21.86■■□□□ 1.09
NEK3-206ENST00000611833 TMEM57Q8N5G2 664 aa21.86■■□□□ 1.09
NEK3-206ENST00000611833 COG3Q96JB2 828 aa21.86■■□□□ 1.09
NEK3-206ENST00000611833 ALDH1L2Q3SY69 923 aa21.85■■□□□ 1.09
NEK3-206ENST00000611833 ITSN1Q15811 1721 aa21.85■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms