RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 NRKQ7Z2Y5 1582 aa14.73□□□□□ -0.05
LIG1-210ENST00000596332 TTC21BQ7Z4L5 1316 aa14.73□□□□□ -0.05
LIG1-210ENST00000596332 TNS3Q68CZ2 1445 aa14.73□□□□□ -0.05
LIG1-210ENST00000596332 JCADQ9P266 1359 aa14.73□□□□□ -0.05
LIG1-210ENST00000596332 PER1O15534 1290 aaPredicted RBP14.72□□□□□ -0.05
LIG1-210ENST00000596332 ZRANB1Q9UGI0 708 aa14.72□□□□□ -0.05
LIG1-210ENST00000596332 MON2Q7Z3U7 1717 aa14.72□□□□□ -0.05
LIG1-210ENST00000596332 BRD4O60885 1362 aaPredicted RBP14.72□□□□□ -0.05
LIG1-210ENST00000596332 KTN1Q86UP2 1357 aaKnown RBP14.72□□□□□ -0.05
LIG1-210ENST00000596332 SHPRHQ149N8 1683 aa14.71□□□□□ -0.06
LIG1-210ENST00000596332 COL22A1Q8NFW1 1626 aaPredicted RBP14.7□□□□□ -0.06
LIG1-210ENST00000596332 MED1Q15648 1581 aaPredicted RBP14.7□□□□□ -0.06
LIG1-210ENST00000596332 PANK3Q9H999 370 aa14.7□□□□□ -0.06
LIG1-210ENST00000596332 TERF2IPQ9NYB0 399 aa14.7□□□□□ -0.06
LIG1-210ENST00000596332 LRP6O75581 1613 aa14.7□□□□□ -0.06
LIG1-210ENST00000596332 EDC4Q6P2E9 1401 aaKnown RBP14.69□□□□□ -0.06
LIG1-210ENST00000596332 CABLES1Q8TDN4 633 aa14.69□□□□□ -0.06
LIG1-210ENST00000596332 PIK3C2AO00443 1686 aa14.68□□□□□ -0.06
LIG1-210ENST00000596332 FYB1O15117 783 aa14.68□□□□□ -0.06
LIG1-210ENST00000596332 NUTM2GQ5VZR2 741 aa14.68□□□□□ -0.06
LIG1-210ENST00000596332 HDGFL2Q7Z4V5 671 aaPredicted RBP14.68□□□□□ -0.06
LIG1-210ENST00000596332 NME9Q86XW9 330 aa14.68□□□□□ -0.06
LIG1-210ENST00000596332 POLR3GLQ9BT43 218 aa14.68□□□□□ -0.06
LIG1-210ENST00000596332 MARF1Q9Y4F3 1742 aaKnown RBP14.68□□□□□ -0.06
LIG1-210ENST00000596332 CRYBG1Q9Y4K1 1723 aa14.68□□□□□ -0.06
LIG1-210ENST00000596332 USP31Q70CQ4 1352 aa14.68□□□□□ -0.06
LIG1-210ENST00000596332 USP19O94966 1318 aa14.67□□□□□ -0.06
LIG1-210ENST00000596332 PAK3O75914 559 aaPredicted RBP14.67□□□□□ -0.06
LIG1-210ENST00000596332 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.67□□□□□ -0.06
LIG1-210ENST00000596332 TTC21AQ8NDW8 1320 aa14.66□□□□□ -0.06
LIG1-210ENST00000596332 ARHGEF10O15013 1369 aa14.66□□□□□ -0.06
LIG1-210ENST00000596332 ABTB2Q8N961 1025 aa14.66□□□□□ -0.06
LIG1-210ENST00000596332 SPATA31A6Q5VVP1 1343 aa14.66□□□□□ -0.06
LIG1-210ENST00000596332 OVOS2A0A0J9YW53 1432 aa14.64□□□□□ -0.07
LIG1-210ENST00000596332 OVOS2Q6IE36 1432 aa14.64□□□□□ -0.07
LIG1-210ENST00000596332 NSD3Q9BZ95 1437 aa14.64□□□□□ -0.07
LIG1-210ENST00000596332 USP54Q70EL1 1684 aa14.64□□□□□ -0.07
LIG1-210ENST00000596332 SLIT3O75094 1523 aa14.63□□□□□ -0.07
LIG1-210ENST00000596332 NLRP6P59044 892 aa14.63□□□□□ -0.07
LIG1-210ENST00000596332 AMER1Q5JTC6 1135 aaPredicted RBP14.63□□□□□ -0.07
LIG1-210ENST00000596332 LMOD2Q6P5Q4 547 aa14.63□□□□□ -0.07
LIG1-210ENST00000596332 ABCA3Q99758 1704 aa14.63□□□□□ -0.07
LIG1-210ENST00000596332 GCP02774 474 aa14.62□□□□□ -0.07
LIG1-210ENST00000596332 FBLN1P23142 703 aa14.62□□□□□ -0.07
LIG1-210ENST00000596332 ZNF316A6NFI3 1004 aaPredicted RBP14.61□□□□□ -0.07
LIG1-210ENST00000596332 NUTM2BA6NNL0 878 aaPredicted RBP14.61□□□□□ -0.07
LIG1-210ENST00000596332 NUTM2EB1AL46 878 aaPredicted RBP14.61□□□□□ -0.07
LIG1-210ENST00000596332 NLRP13Q86W25 1043 aa14.61□□□□□ -0.07
LIG1-210ENST00000596332 NUTM2AQ8IVF1 878 aaPredicted RBP14.61□□□□□ -0.07
LIG1-210ENST00000596332 GGNBP2Q9H3C7 697 aa14.61□□□□□ -0.07
LIG1-210ENST00000596332 RGS17Q9UGC6 210 aaPredicted RBP14.61□□□□□ -0.07
LIG1-210ENST00000596332 FAM83GA6ND36 823 aa14.6□□□□□ -0.07
LIG1-210ENST00000596332 PHRF1Q9P1Y6 1649 aaKnown RBP14.59□□□□□ -0.07
LIG1-210ENST00000596332 PLEKHG5O94827 1062 aa14.59□□□□□ -0.07
LIG1-210ENST00000596332 NFAT5O94916 1531 aa14.59□□□□□ -0.07
LIG1-210ENST00000596332 ADAMTS2O95450 1211 aa14.57□□□□□ -0.08
LIG1-210ENST00000596332 DDX10Q13206 875 aaKnown RBP14.57□□□□□ -0.08
LIG1-210ENST00000596332 ARHGEF25Q86VW2 580 aa14.57□□□□□ -0.08
LIG1-210ENST00000596332 FNBP4Q8N3X1 1017 aaPredicted RBP14.57□□□□□ -0.08
LIG1-210ENST00000596332 CPDO75976 1380 aa14.57□□□□□ -0.08
LIG1-210ENST00000596332 ZC3H6P61129 1189 aaKnown RBP14.56□□□□□ -0.08
LIG1-210ENST00000596332 CGNL1Q0VF96 1302 aa14.56□□□□□ -0.08
LIG1-210ENST00000596332 KIAA0232Q92628 1395 aa14.56□□□□□ -0.08
LIG1-210ENST00000596332 SLIT2O94813 1529 aa14.56□□□□□ -0.08
LIG1-210ENST00000596332 AXIN2Q9Y2T1 843 aa14.55□□□□□ -0.08
LIG1-210ENST00000596332 KNSTRNQ9Y448 316 aa14.55□□□□□ -0.08
LIG1-210ENST00000596332 NPC1L1Q9UHC9 1359 aa14.55□□□□□ -0.08
LIG1-210ENST00000596332 BCL9LQ86UU0 1499 aa14.55□□□□□ -0.08
LIG1-210ENST00000596332 COL18A1P39060 1754 aa14.55□□□□□ -0.08
LIG1-210ENST00000596332 CHRNA2Q15822 529 aa14.54□□□□□ -0.08
LIG1-210ENST00000596332 COG3Q96JB2 828 aa14.54□□□□□ -0.08
LIG1-210ENST00000596332 KIF20BQ96Q89 1820 aa14.53□□□□□ -0.08
LIG1-210ENST00000596332 KCNH5Q8NCM2 988 aa14.53□□□□□ -0.08
LIG1-210ENST00000596332 LMO7Q8WWI1 1683 aa14.52□□□□□ -0.08
LIG1-210ENST00000596332 CAMTA1Q9Y6Y1 1673 aa14.52□□□□□ -0.08
LIG1-210ENST00000596332 NSD2O96028 1365 aa14.51□□□□□ -0.09
LIG1-210ENST00000596332 AATKQ6ZMQ8 1374 aa14.51□□□□□ -0.09
LIG1-210ENST00000596332 MAP3K19Q56UN5 1328 aa14.51□□□□□ -0.09
LIG1-210ENST00000596332 SOX12O15370 315 aa14.51□□□□□ -0.09
LIG1-210ENST00000596332 C8orf37Q96NL8 207 aa14.51□□□□□ -0.09
LIG1-210ENST00000596332 POLKQ9UBT6 870 aa14.51□□□□□ -0.09
LIG1-210ENST00000596332 AFF2P51816 1311 aa14.5□□□□□ -0.09
LIG1-210ENST00000596332 RRS1Q15050 365 aaKnown RBP14.5□□□□□ -0.09
LIG1-210ENST00000596332 NGLY1Q96IV0 654 aa14.5□□□□□ -0.09
LIG1-210ENST00000596332 ANKRD26Q9UPS8 1709 aa14.49□□□□□ -0.09
LIG1-210ENST00000596332 CC2D1BQ5T0F9 858 aaKnown RBP14.49□□□□□ -0.09
LIG1-210ENST00000596332 POTEAQ6S8J7 498 aa14.49□□□□□ -0.09
LIG1-210ENST00000596332 PRDM11Q9NQV5 511 aa14.49□□□□□ -0.09
LIG1-210ENST00000596332 EMILIN1Q9Y6C2 1016 aa14.49□□□□□ -0.09
LIG1-210ENST00000596332 PEAK1Q9H792 1746 aa14.49□□□□□ -0.09
LIG1-210ENST00000596332 COL14A1Q05707 1796 aaKnown RBP14.48□□□□□ -0.09
LIG1-210ENST00000596332 BTG4Q9NY30 223 aa14.48□□□□□ -0.09
LIG1-210ENST00000596332 PLCH1Q4KWH8 1693 aa14.47□□□□□ -0.09
LIG1-210ENST00000596332 HAP1P54257 671 aaPredicted RBP14.47□□□□□ -0.09
LIG1-210ENST00000596332 MORC1Q86VD1 984 aa14.47□□□□□ -0.09
LIG1-210ENST00000596332 UNC5CLQ8IV45 518 aa14.47□□□□□ -0.09
LIG1-210ENST00000596332 IP6K1Q92551 441 aa14.47□□□□□ -0.09
LIG1-210ENST00000596332 NRAPQ86VF7 1730 aa14.46□□□□□ -0.09
LIG1-210ENST00000596332 HOXC9P31274 260 aa14.46□□□□□ -0.09
LIG1-210ENST00000596332 TNNT2P45379 298 aaPredicted RBP14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms