RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 TOPAZ1Q8N9V7 1692 aa24.23■■□□□ 1.47
SHKBP1-212ENST00000596163 AFF2P51816 1311 aa24.21■■□□□ 1.47
SHKBP1-212ENST00000596163 CDCA8Q53HL2 280 aa24.21■■□□□ 1.47
SHKBP1-212ENST00000596163 TMC1Q8TDI8 760 aa24.2■■□□□ 1.46
SHKBP1-212ENST00000596163 PLEKHG5O94827 1062 aa24.19■■□□□ 1.46
SHKBP1-212ENST00000596163 ABTB2Q8N961 1025 aa24.19■■□□□ 1.46
SHKBP1-212ENST00000596163 CABLES1Q8TDN4 633 aa24.19■■□□□ 1.46
SHKBP1-212ENST00000596163 EIF4G2P78344 907 aaKnown RBP eCLIP24.18■■□□□ 1.46
SHKBP1-212ENST00000596163 POTEAQ6S8J7 498 aa24.17■■□□□ 1.46
SHKBP1-212ENST00000596163 TRPM3Q9HCF6 1732 aaPredicted RBP24.17■■□□□ 1.46
SHKBP1-212ENST00000596163 HDGFL2Q7Z4V5 671 aaPredicted RBP24.16■■□□□ 1.46
SHKBP1-212ENST00000596163 FNBP4Q8N3X1 1017 aaPredicted RBP24.16■■□□□ 1.46
SHKBP1-212ENST00000596163 TERF2IPQ9NYB0 399 aa24.16■■□□□ 1.46
SHKBP1-212ENST00000596163 USP6P35125 1406 aa24.16■■□□□ 1.46
SHKBP1-212ENST00000596163 NLRP13Q86W25 1043 aa24.15■■□□□ 1.46
SHKBP1-212ENST00000596163 USP21Q9UK80 565 aa24.14■■□□□ 1.45
SHKBP1-212ENST00000596163 NINLQ9Y2I6 1382 aa24.14■■□□□ 1.45
SHKBP1-212ENST00000596163 SLC12A5Q9H2X9 1139 aa24.13■■□□□ 1.45
SHKBP1-212ENST00000596163 KTN1Q86UP2 1357 aaKnown RBP24.13■■□□□ 1.45
SHKBP1-212ENST00000596163 ALS2Q96Q42 1657 aa24.12■■□□□ 1.45
SHKBP1-212ENST00000596163 NUTM2GQ5VZR2 741 aa24.12■■□□□ 1.45
SHKBP1-212ENST00000596163 QTRT2Q9H974 415 aaKnown RBP24.12■■□□□ 1.45
SHKBP1-212ENST00000596163 CPSF1Q10570 1443 aaKnown RBP24.11■■□□□ 1.45
SHKBP1-212ENST00000596163 TTC21BQ7Z4L5 1316 aa24.1■■□□□ 1.45
SHKBP1-212ENST00000596163 TTC21AQ8NDW8 1320 aa24.1■■□□□ 1.45
SHKBP1-212ENST00000596163 RXRBP28702 533 aa24.1■■□□□ 1.45
SHKBP1-212ENST00000596163 NLRP6P59044 892 aa24.1■■□□□ 1.45
SHKBP1-212ENST00000596163 HSPA5P11021 654 aaKnown RBP24.09■■□□□ 1.45
SHKBP1-212ENST00000596163 TRPC5Q9UL62 973 aaPredicted RBP24.09■■□□□ 1.45
SHKBP1-212ENST00000596163 SSH2Q76I76 1423 aa24.08■■□□□ 1.44
SHKBP1-212ENST00000596163 FAM83GA6ND36 823 aa24.06■■□□□ 1.44
SHKBP1-212ENST00000596163 RBM6P78332 1123 aaKnown RBP24.06■■□□□ 1.44
SHKBP1-212ENST00000596163 UNC5CLQ8IV45 518 aa24.06■■□□□ 1.44
SHKBP1-212ENST00000596163 PRDM11Q9NQV5 511 aa24.05■■□□□ 1.44
SHKBP1-212ENST00000596163 USP19O94966 1318 aa24.05■■□□□ 1.44
SHKBP1-212ENST00000596163 GCP02774 474 aa24.03■■□□□ 1.44
SHKBP1-212ENST00000596163 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.03■■□□□ 1.44
SHKBP1-212ENST00000596163 SLIT2O94813 1529 aa24.02■■□□□ 1.44
SHKBP1-212ENST00000596163 A0A1W2PP64 1363 aa24.02■■□□□ 1.44
SHKBP1-212ENST00000596163 MARF1Q9Y4F3 1742 aaKnown RBP24.01■■□□□ 1.43
SHKBP1-212ENST00000596163 BCL9LQ86UU0 1499 aa24.01■■□□□ 1.43
SHKBP1-212ENST00000596163 CD163L1Q9NR16 1453 aa24.01■■□□□ 1.43
SHKBP1-212ENST00000596163 ZC3H6P61129 1189 aaKnown RBP24.01■■□□□ 1.43
SHKBP1-212ENST00000596163 EDC4Q6P2E9 1401 aaKnown RBP24.01■■□□□ 1.43
SHKBP1-212ENST00000596163 KCNH5Q8NCM2 988 aa24■■□□□ 1.43
SHKBP1-212ENST00000596163 KIAA0232Q92628 1395 aa24■■□□□ 1.43
SHKBP1-212ENST00000596163 AKAP12Q02952 1782 aa23.99■■□□□ 1.43
SHKBP1-212ENST00000596163 BTG4Q9NY30 223 aa23.99■■□□□ 1.43
SHKBP1-212ENST00000596163 ANKRD36BQ8N2N9 1353 aa23.99■■□□□ 1.43
SHKBP1-212ENST00000596163 ATRNO75882 1429 aa23.99■■□□□ 1.43
SHKBP1-212ENST00000596163 ABCA3Q99758 1704 aa23.98■■□□□ 1.43
SHKBP1-212ENST00000596163 CPDO75976 1380 aa23.97■■□□□ 1.43
SHKBP1-212ENST00000596163 VPS72Q15906 364 aa23.97■■□□□ 1.43
SHKBP1-212ENST00000596163 GJD4Q96KN9 370 aaPredicted RBP23.97■■□□□ 1.43
SHKBP1-212ENST00000596163 POLR3GLQ9BT43 218 aa23.97■■□□□ 1.43
SHKBP1-212ENST00000596163 USP31Q70CQ4 1352 aa23.96■■□□□ 1.43
SHKBP1-212ENST00000596163 CHRNA2Q15822 529 aa23.95■■□□□ 1.42
SHKBP1-212ENST00000596163 NME9Q86XW9 330 aa23.95■■□□□ 1.42
SHKBP1-212ENST00000596163 CCDC9Q9Y3X0 531 aaKnown RBP23.95■■□□□ 1.42
SHKBP1-212ENST00000596163 CDK12Q9NYV4 1490 aaPredicted RBP23.94■■□□□ 1.42
SHKBP1-212ENST00000596163 MON2Q7Z3U7 1717 aa23.94■■□□□ 1.42
SHKBP1-212ENST00000596163 COL14A1Q05707 1796 aaKnown RBP23.93■■□□□ 1.42
SHKBP1-212ENST00000596163 CRYBG1Q9Y4K1 1723 aa23.93■■□□□ 1.42
SHKBP1-212ENST00000596163 PHRF1Q9P1Y6 1649 aaKnown RBP23.93■■□□□ 1.42
SHKBP1-212ENST00000596163 EVA1CP58658 441 aa23.92■■□□□ 1.42
SHKBP1-212ENST00000596163 NRKQ7Z2Y5 1582 aa23.91■■□□□ 1.42
SHKBP1-212ENST00000596163 SLIT3O75094 1523 aa23.91■■□□□ 1.42
SHKBP1-212ENST00000596163 ZBTB7CA1YPR0 619 aa23.91■■□□□ 1.42
SHKBP1-212ENST00000596163 PIK3C2AO00443 1686 aa23.91■■□□□ 1.42
SHKBP1-212ENST00000596163 NWD2Q9ULI1 1742 aa23.9■■□□□ 1.42
SHKBP1-212ENST00000596163 COG3Q96JB2 828 aa23.9■■□□□ 1.42
SHKBP1-212ENST00000596163 ZRANB1Q9UGI0 708 aa23.9■■□□□ 1.42
SHKBP1-212ENST00000596163 SOX12O15370 315 aa23.89■■□□□ 1.41
SHKBP1-212ENST00000596163 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.89■■□□□ 1.41
SHKBP1-212ENST00000596163 ARHGEF25Q86VW2 580 aa23.88■■□□□ 1.41
SHKBP1-212ENST00000596163 STRN4Q9NRL3 753 aa23.88■■□□□ 1.41
SHKBP1-212ENST00000596163 PLCH1Q4KWH8 1693 aa23.88■■□□□ 1.41
SHKBP1-212ENST00000596163 AATKQ6ZMQ8 1374 aa23.88■■□□□ 1.41
SHKBP1-212ENST00000596163 FYB1O15117 783 aa23.84■■□□□ 1.41
SHKBP1-212ENST00000596163 CARD14Q9BXL6 1004 aa23.84■■□□□ 1.41
SHKBP1-212ENST00000596163 RGS12O14924 1447 aa23.84■■□□□ 1.41
SHKBP1-212ENST00000596163 SPATA31A5Q5VU36 1347 aa23.84■■□□□ 1.41
SHKBP1-212ENST00000596163 SPATA31A7Q8IWB4 1347 aa23.84■■□□□ 1.41
SHKBP1-212ENST00000596163 C11orf95C9JLR9 678 aaPredicted RBP23.83■■□□□ 1.41
SHKBP1-212ENST00000596163 ONECUT3O60422 494 aaPredicted RBP23.82■■□□□ 1.4
SHKBP1-212ENST00000596163 OVOS2A0A0J9YW53 1432 aa23.82■■□□□ 1.4
SHKBP1-212ENST00000596163 OVOS2Q6IE36 1432 aa23.82■■□□□ 1.4
SHKBP1-212ENST00000596163 GGNBP2Q9H3C7 697 aa23.81■■□□□ 1.4
SHKBP1-212ENST00000596163 NSD3Q9BZ95 1437 aa23.81■■□□□ 1.4
SHKBP1-212ENST00000596163 CGNL1Q0VF96 1302 aa23.81■■□□□ 1.4
SHKBP1-212ENST00000596163 PANK3Q9H999 370 aa23.8■■□□□ 1.4
SHKBP1-212ENST00000596163 CAMTA1Q9Y6Y1 1673 aa23.79■■□□□ 1.4
SHKBP1-212ENST00000596163 SEPT12Q8IYM1 358 aa23.79■■□□□ 1.4
SHKBP1-212ENST00000596163 USP54Q70EL1 1684 aa23.79■■□□□ 1.4
SHKBP1-212ENST00000596163 KIF7Q2M1P5 1343 aa23.79■■□□□ 1.4
SHKBP1-212ENST00000596163 SPATA31A1Q5TZJ5 1347 aa23.79■■□□□ 1.4
SHKBP1-212ENST00000596163 NRAPQ86VF7 1730 aa23.79■■□□□ 1.4
SHKBP1-212ENST00000596163 A0A0G2JS52 829 aa23.78■■□□□ 1.4
SHKBP1-212ENST00000596163 MYT1Q01538 1121 aa23.78■■□□□ 1.4
SHKBP1-212ENST00000596163 FAM98CQ17RN3 349 aaKnown RBP23.78■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 191.3 ms