RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 EIF4G2P78344 907 aaKnown RBP eCLIP21.05■□□□□ 0.96
UPF1-202ENST00000594243 ZNF772Q68DY9 489 aaPredicted RBP21.05■□□□□ 0.96
UPF1-202ENST00000594243 NGLY1Q96IV0 654 aa21.05■□□□□ 0.96
UPF1-202ENST00000594243 CDCA8Q53HL2 280 aa21.04■□□□□ 0.96
UPF1-202ENST00000594243 TMC1Q8TDI8 760 aa21.04■□□□□ 0.96
UPF1-202ENST00000594243 ABTB2Q8N961 1025 aa21.03■□□□□ 0.96
UPF1-202ENST00000594243 CABLES1Q8TDN4 633 aa21.03■□□□□ 0.96
UPF1-202ENST00000594243 PLEKHG5O94827 1062 aa21.02■□□□□ 0.96
UPF1-202ENST00000594243 ALS2Q96Q42 1657 aa21.02■□□□□ 0.95
UPF1-202ENST00000594243 USP6P35125 1406 aa21.01■□□□□ 0.95
UPF1-202ENST00000594243 AFF2P51816 1311 aa21.01■□□□□ 0.95
UPF1-202ENST00000594243 HDGFL2Q7Z4V5 671 aaPredicted RBP21■□□□□ 0.95
UPF1-202ENST00000594243 SLC12A5Q9H2X9 1139 aa21■□□□□ 0.95
UPF1-202ENST00000594243 CPSF1Q10570 1443 aaKnown RBP20.99■□□□□ 0.95
UPF1-202ENST00000594243 POTEAQ6S8J7 498 aa20.99■□□□□ 0.95
UPF1-202ENST00000594243 NLRP13Q86W25 1043 aa20.99■□□□□ 0.95
UPF1-202ENST00000594243 TERF2IPQ9NYB0 399 aa20.99■□□□□ 0.95
UPF1-202ENST00000594243 KTN1Q86UP2 1357 aaKnown RBP20.98■□□□□ 0.95
UPF1-202ENST00000594243 NINLQ9Y2I6 1382 aa20.98■□□□□ 0.95
UPF1-202ENST00000594243 FNBP4Q8N3X1 1017 aaPredicted RBP20.98■□□□□ 0.95
UPF1-202ENST00000594243 HSPA5P11021 654 aaKnown RBP20.97■□□□□ 0.95
UPF1-202ENST00000594243 NUTM2GQ5VZR2 741 aa20.97■□□□□ 0.95
UPF1-202ENST00000594243 USP21Q9UK80 565 aa20.96■□□□□ 0.95
UPF1-202ENST00000594243 SSH2Q76I76 1423 aa20.95■□□□□ 0.95
UPF1-202ENST00000594243 TTC21BQ7Z4L5 1316 aa20.95■□□□□ 0.94
UPF1-202ENST00000594243 TTC21AQ8NDW8 1320 aa20.95■□□□□ 0.94
UPF1-202ENST00000594243 NLRP6P59044 892 aa20.94■□□□□ 0.94
UPF1-202ENST00000594243 QTRT2Q9H974 415 aaKnown RBP20.94■□□□□ 0.94
UPF1-202ENST00000594243 MARF1Q9Y4F3 1742 aaKnown RBP20.93■□□□□ 0.94
UPF1-202ENST00000594243 AKAP12Q02952 1782 aa20.93■□□□□ 0.94
UPF1-202ENST00000594243 CD163L1Q9NR16 1453 aa20.92■□□□□ 0.94
UPF1-202ENST00000594243 FAM83GA6ND36 823 aa20.91■□□□□ 0.94
UPF1-202ENST00000594243 RXRBP28702 533 aa20.91■□□□□ 0.94
UPF1-202ENST00000594243 TRPC5Q9UL62 973 aaPredicted RBP20.91■□□□□ 0.94
UPF1-202ENST00000594243 ABCA3Q99758 1704 aa20.9■□□□□ 0.94
UPF1-202ENST00000594243 A0A1W2PP64 1363 aa20.9■□□□□ 0.94
UPF1-202ENST00000594243 USP19O94966 1318 aa20.9■□□□□ 0.94
UPF1-202ENST00000594243 GCP02774 474 aa20.89■□□□□ 0.93
UPF1-202ENST00000594243 UNC5CLQ8IV45 518 aa20.89■□□□□ 0.93
UPF1-202ENST00000594243 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.89■□□□□ 0.93
UPF1-202ENST00000594243 EDC4Q6P2E9 1401 aaKnown RBP20.88■□□□□ 0.93
UPF1-202ENST00000594243 PRDM11Q9NQV5 511 aa20.88■□□□□ 0.93
UPF1-202ENST00000594243 SLIT2O94813 1529 aa20.88■□□□□ 0.93
UPF1-202ENST00000594243 BCL9LQ86UU0 1499 aa20.88■□□□□ 0.93
UPF1-202ENST00000594243 MON2Q7Z3U7 1717 aa20.87■□□□□ 0.93
UPF1-202ENST00000594243 CRYBG1Q9Y4K1 1723 aa20.87■□□□□ 0.93
UPF1-202ENST00000594243 ANKRD36BQ8N2N9 1353 aa20.87■□□□□ 0.93
UPF1-202ENST00000594243 ZC3H6P61129 1189 aaKnown RBP20.87■□□□□ 0.93
UPF1-202ENST00000594243 RBM6P78332 1123 aaKnown RBP20.87■□□□□ 0.93
UPF1-202ENST00000594243 KCNH5Q8NCM2 988 aa20.86■□□□□ 0.93
UPF1-202ENST00000594243 PHRF1Q9P1Y6 1649 aaKnown RBP20.86■□□□□ 0.93
UPF1-202ENST00000594243 KIAA0232Q92628 1395 aa20.85■□□□□ 0.93
UPF1-202ENST00000594243 NRKQ7Z2Y5 1582 aa20.85■□□□□ 0.93
UPF1-202ENST00000594243 POLR3GLQ9BT43 218 aa20.85■□□□□ 0.93
UPF1-202ENST00000594243 BTG4Q9NY30 223 aa20.85■□□□□ 0.93
UPF1-202ENST00000594243 PIK3C2AO00443 1686 aa20.84■□□□□ 0.93
UPF1-202ENST00000594243 USP31Q70CQ4 1352 aa20.84■□□□□ 0.93
UPF1-202ENST00000594243 COL14A1Q05707 1796 aaKnown RBP20.83■□□□□ 0.93
UPF1-202ENST00000594243 NME9Q86XW9 330 aa20.83■□□□□ 0.93
UPF1-202ENST00000594243 ATRNO75882 1429 aa20.83■□□□□ 0.93
UPF1-202ENST00000594243 CPDO75976 1380 aa20.83■□□□□ 0.92
UPF1-202ENST00000594243 GJD4Q96KN9 370 aaPredicted RBP20.82■□□□□ 0.92
UPF1-202ENST00000594243 CHRNA2Q15822 529 aa20.81■□□□□ 0.92
UPF1-202ENST00000594243 VPS72Q15906 364 aa20.81■□□□□ 0.92
UPF1-202ENST00000594243 SLIT3O75094 1523 aa20.81■□□□□ 0.92
UPF1-202ENST00000594243 NWD2Q9ULI1 1742 aa20.81■□□□□ 0.92
UPF1-202ENST00000594243 ZRANB1Q9UGI0 708 aa20.8■□□□□ 0.92
UPF1-202ENST00000594243 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.8■□□□□ 0.92
UPF1-202ENST00000594243 PLCH1Q4KWH8 1693 aa20.8■□□□□ 0.92
UPF1-202ENST00000594243 CDK12Q9NYV4 1490 aaPredicted RBP20.78■□□□□ 0.92
UPF1-202ENST00000594243 C11orf95C9JLR9 678 aaPredicted RBP20.78■□□□□ 0.92
UPF1-202ENST00000594243 CCDC9Q9Y3X0 531 aaKnown RBP20.78■□□□□ 0.92
UPF1-202ENST00000594243 ZBTB7CA1YPR0 619 aa20.77■□□□□ 0.92
UPF1-202ENST00000594243 SOX12O15370 315 aa20.77■□□□□ 0.92
UPF1-202ENST00000594243 EVA1CP58658 441 aa20.77■□□□□ 0.92
UPF1-202ENST00000594243 COG3Q96JB2 828 aa20.77■□□□□ 0.92
UPF1-202ENST00000594243 ARHGEF25Q86VW2 580 aa20.76■□□□□ 0.91
UPF1-202ENST00000594243 MYOM1P52179 1685 aa20.75■□□□□ 0.91
UPF1-202ENST00000594243 FYB1O15117 783 aa20.75■□□□□ 0.91
UPF1-202ENST00000594243 CARD14Q9BXL6 1004 aa20.75■□□□□ 0.91
UPF1-202ENST00000594243 AATKQ6ZMQ8 1374 aa20.74■□□□□ 0.91
UPF1-202ENST00000594243 STRN4Q9NRL3 753 aa20.74■□□□□ 0.91
UPF1-202ENST00000594243 USP54Q70EL1 1684 aa20.73■□□□□ 0.91
UPF1-202ENST00000594243 OVOS2A0A0J9YW53 1432 aa20.73■□□□□ 0.91
UPF1-202ENST00000594243 OVOS2Q6IE36 1432 aa20.73■□□□□ 0.91
UPF1-202ENST00000594243 PANK3Q9H999 370 aa20.72■□□□□ 0.91
UPF1-202ENST00000594243 NRAPQ86VF7 1730 aa20.72■□□□□ 0.91
UPF1-202ENST00000594243 KIF7Q2M1P5 1343 aa20.72■□□□□ 0.91
UPF1-202ENST00000594243 NSD3Q9BZ95 1437 aa20.71■□□□□ 0.91
UPF1-202ENST00000594243 CAMTA1Q9Y6Y1 1673 aa20.71■□□□□ 0.91
UPF1-202ENST00000594243 GGNBP2Q9H3C7 697 aa20.71■□□□□ 0.91
UPF1-202ENST00000594243 ONECUT3O60422 494 aaPredicted RBP20.7■□□□□ 0.9
UPF1-202ENST00000594243 SPATA31A5Q5VU36 1347 aa20.7■□□□□ 0.9
UPF1-202ENST00000594243 SPATA31A7Q8IWB4 1347 aa20.7■□□□□ 0.9
UPF1-202ENST00000594243 RGS12O14924 1447 aa20.7■□□□□ 0.9
UPF1-202ENST00000594243 NFAT5O94916 1531 aa20.69■□□□□ 0.9
UPF1-202ENST00000594243 LMO7Q8WWI1 1683 aa20.69■□□□□ 0.9
UPF1-202ENST00000594243 CGNL1Q0VF96 1302 aa20.69■□□□□ 0.9
UPF1-202ENST00000594243 GLI3P10071 1580 aa20.68■□□□□ 0.9
UPF1-202ENST00000594243 ZEB1P37275 1124 aaPredicted RBP20.68■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms