RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 TBX22Q9Y458 520 aa25.7■■□□□ 1.71
CLIP3-206ENST00000593074 PPIP5K1Q6PFW1 1433 aa25.7■■□□□ 1.7
CLIP3-206ENST00000593074 WDR63Q8IWG1 891 aa25.7■■□□□ 1.7
CLIP3-206ENST00000593074 CCDC61Q9Y6R9 512 aa25.7■■□□□ 1.7
CLIP3-206ENST00000593074 CDC42BPGQ6DT37 1551 aa25.69■■□□□ 1.7
CLIP3-206ENST00000593074 EDC4Q6P2E9 1401 aaKnown RBP25.69■■□□□ 1.7
CLIP3-206ENST00000593074 RRP7AQ9Y3A4 280 aaKnown RBP25.68■■□□□ 1.7
CLIP3-206ENST00000593074 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.68■■□□□ 1.7
CLIP3-206ENST00000593074 MON2Q7Z3U7 1717 aa25.66■■□□□ 1.7
CLIP3-206ENST00000593074 NEUROD2Q15784 382 aa25.66■■□□□ 1.7
CLIP3-206ENST00000593074 PLEKHF1Q96S99 279 aa25.64■■□□□ 1.7
CLIP3-206ENST00000593074 AMOTL2Q9Y2J4 779 aa25.64■■□□□ 1.7
CLIP3-206ENST00000593074 PTPRUQ92729 1446 aa25.64■■□□□ 1.69
CLIP3-206ENST00000593074 DNAJC5Q9H3Z4 198 aa25.64■■□□□ 1.69
CLIP3-206ENST00000593074 AKAP12Q02952 1782 aa25.63■■□□□ 1.69
CLIP3-206ENST00000593074 BCAR3O75815 825 aa25.62■■□□□ 1.69
CLIP3-206ENST00000593074 NCKAP5LQ9HCH0 1330 aa25.61■■□□□ 1.69
CLIP3-206ENST00000593074 ZNF692Q9BU19 519 aaPredicted RBP25.61■■□□□ 1.69
CLIP3-206ENST00000593074 ITSN1Q15811 1721 aa25.61■■□□□ 1.69
CLIP3-206ENST00000593074 PRR36Q9H6K5 1346 aa25.6■■□□□ 1.69
CLIP3-206ENST00000593074 U2SURPO15042 1029 aaKnown RBP25.6■■□□□ 1.69
CLIP3-206ENST00000593074 TCERG1O14776 1098 aaKnown RBP25.59■■□□□ 1.69
CLIP3-206ENST00000593074 DIAPH1O60610 1272 aaKnown RBP25.59■■□□□ 1.69
CLIP3-206ENST00000593074 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.59■■□□□ 1.69
CLIP3-206ENST00000593074 KDM2BQ8NHM5 1336 aa25.59■■□□□ 1.69
CLIP3-206ENST00000593074 TOPAZ1Q8N9V7 1692 aa25.58■■□□□ 1.69
CLIP3-206ENST00000593074 RIMS1Q86UR5 1692 aaKnown RBP25.57■■□□□ 1.68
CLIP3-206ENST00000593074 DIP2AQ14689 1571 aa25.57■■□□□ 1.68
CLIP3-206ENST00000593074 CEP170BQ9Y4F5 1589 aaPredicted RBP25.56■■□□□ 1.68
CLIP3-206ENST00000593074 POLKQ9UBT6 870 aa25.56■■□□□ 1.68
CLIP3-206ENST00000593074 NME9Q86XW9 330 aa25.56■■□□□ 1.68
CLIP3-206ENST00000593074 MYH16Q9H6N6 1097 aa25.56■■□□□ 1.68
CLIP3-206ENST00000593074 MAP2P11137 1827 aaKnown RBP25.56■■□□□ 1.68
CLIP3-206ENST00000593074 TMPOP42166 694 aaKnown RBP25.55■■□□□ 1.68
CLIP3-206ENST00000593074 PDE3AQ14432 1141 aa25.55■■□□□ 1.68
CLIP3-206ENST00000593074 MAPK8IP3Q9UPT6 1336 aa25.55■■□□□ 1.68
CLIP3-206ENST00000593074 AATKQ6ZMQ8 1374 aa25.55■■□□□ 1.68
CLIP3-206ENST00000593074 LRRC7Q96NW7 1537 aa25.55■■□□□ 1.68
CLIP3-206ENST00000593074 CDK12Q9NYV4 1490 aaPredicted RBP25.54■■□□□ 1.68
CLIP3-206ENST00000593074 NRKQ7Z2Y5 1582 aa25.54■■□□□ 1.68
CLIP3-206ENST00000593074 PTCH1Q13635 1447 aa25.54■■□□□ 1.68
CLIP3-206ENST00000593074 MSH5O43196 834 aa25.54■■□□□ 1.68
CLIP3-206ENST00000593074 PLEKHG3A1L390 1219 aa25.53■■□□□ 1.68
CLIP3-206ENST00000593074 MS4A1P11836 297 aa25.53■■□□□ 1.68
CLIP3-206ENST00000593074 RARSP54136 660 aaKnown RBP25.53■■□□□ 1.68
CLIP3-206ENST00000593074 CENPQQ7L2Z9 268 aaPredicted RBP25.53■■□□□ 1.68
CLIP3-206ENST00000593074 PNNQ9H307 717 aaKnown RBP25.53■■□□□ 1.68
CLIP3-206ENST00000593074 COG3Q96JB2 828 aa25.52■■□□□ 1.68
CLIP3-206ENST00000593074 ANKLE2Q86XL3 938 aa25.51■■□□□ 1.67
CLIP3-206ENST00000593074 TRIM35Q9UPQ4 493 aa25.51■■□□□ 1.67
CLIP3-206ENST00000593074 NUTM2FA1L443 756 aa25.5■■□□□ 1.67
CLIP3-206ENST00000593074 PPM1GO15355 546 aaPredicted RBP25.5■■□□□ 1.67
CLIP3-206ENST00000593074 FCHSD2O94868 740 aa25.5■■□□□ 1.67
CLIP3-206ENST00000593074 FBLN1P23142 703 aa25.5■■□□□ 1.67
CLIP3-206ENST00000593074 ZRANB1Q9UGI0 708 aa25.49■■□□□ 1.67
CLIP3-206ENST00000593074 PIK3R4Q99570 1358 aa25.49■■□□□ 1.67
CLIP3-206ENST00000593074 ACEP12821 1306 aa25.49■■□□□ 1.67
CLIP3-206ENST00000593074 IL16Q14005 1332 aa25.49■■□□□ 1.67
CLIP3-206ENST00000593074 ADAMTSL3P82987 1691 aa25.49■■□□□ 1.67
CLIP3-206ENST00000593074 CT47B1P0C2W7 299 aaPredicted RBP25.48■■□□□ 1.67
CLIP3-206ENST00000593074 ANP32EQ9BTT0 268 aa25.46■■□□□ 1.67
CLIP3-206ENST00000593074 RSPH6AQ9H0K4 717 aa25.46■■□□□ 1.67
CLIP3-206ENST00000593074 CANXP27824 592 aaKnown RBP25.45■■□□□ 1.66
CLIP3-206ENST00000593074 EMILIN1Q9Y6C2 1016 aa25.45■■□□□ 1.66
CLIP3-206ENST00000593074 TTC21BQ7Z4L5 1316 aa25.45■■□□□ 1.66
CLIP3-206ENST00000593074 KCNA6P17658 529 aa25.44■■□□□ 1.66
CLIP3-206ENST00000593074 XRN1Q8IZH2 1706 aaKnown RBP25.44■■□□□ 1.66
CLIP3-206ENST00000593074 RIPK4P57078 832 aa25.43■■□□□ 1.66
CLIP3-206ENST00000593074 IL13P35225 146 aa25.42■■□□□ 1.66
CLIP3-206ENST00000593074 USP6P35125 1406 aa25.41■■□□□ 1.66
CLIP3-206ENST00000593074 PRKAR2BP31323 418 aa25.41■■□□□ 1.66
CLIP3-206ENST00000593074 PANK1Q8TE04 598 aa25.41■■□□□ 1.66
CLIP3-206ENST00000593074 NALCNQ8IZF0 1738 aa25.41■■□□□ 1.66
CLIP3-206ENST00000593074 OVOS2A0A0J9YW53 1432 aa25.41■■□□□ 1.66
CLIP3-206ENST00000593074 OVOS2Q6IE36 1432 aa25.41■■□□□ 1.66
CLIP3-206ENST00000593074 PDE4AP27815 886 aa25.4■■□□□ 1.66
CLIP3-206ENST00000593074 FRAT1Q92837 279 aaPredicted RBP25.4■■□□□ 1.66
CLIP3-206ENST00000593074 TSR2Q969E8 191 aaKnown RBP25.4■■□□□ 1.66
CLIP3-206ENST00000593074 ZNF142P52746 1687 aaPredicted RBP25.4■■□□□ 1.66
CLIP3-206ENST00000593074 BACH2Q9BYV9 841 aa25.4■■□□□ 1.66
CLIP3-206ENST00000593074 AAMPQ13685 434 aa25.38■■□□□ 1.65
CLIP3-206ENST00000593074 COG6Q9Y2V7 657 aa25.38■■□□□ 1.65
CLIP3-206ENST00000593074 SKAP1Q86WV1 359 aa25.38■■□□□ 1.65
CLIP3-206ENST00000593074 PMFBP1Q8TBY8 1022 aa25.38■■□□□ 1.65
CLIP3-206ENST00000593074 CLUAP1Q96AJ1 413 aa25.38■■□□□ 1.65
CLIP3-206ENST00000593074 SETD1BQ9UPS6 1966 aaKnown RBP25.38■■□□□ 1.65
CLIP3-206ENST00000593074 SSH2Q76I76 1423 aa25.37■■□□□ 1.65
CLIP3-206ENST00000593074 RRS1Q15050 365 aaKnown RBP25.37■■□□□ 1.65
CLIP3-206ENST00000593074 NEFMP07197 916 aa25.36■■□□□ 1.65
CLIP3-206ENST00000593074 NGDNQ8NEJ9 315 aaKnown RBP25.36■■□□□ 1.65
CLIP3-206ENST00000593074 BCL2L13Q9BXK5 485 aa25.36■■□□□ 1.65
CLIP3-206ENST00000593074 EXOSC9Q06265 439 aaKnown RBP25.36■■□□□ 1.65
CLIP3-206ENST00000593074 ANP32AP39687 249 aaKnown RBP25.35■■□□□ 1.65
CLIP3-206ENST00000593074 NFE2L2Q16236 605 aa25.35■■□□□ 1.65
CLIP3-206ENST00000593074 TTC21AQ8NDW8 1320 aa25.34■■□□□ 1.65
CLIP3-206ENST00000593074 RLBP1P12271 317 aa25.34■■□□□ 1.65
CLIP3-206ENST00000593074 MYT1Q01538 1121 aa25.33■■□□□ 1.65
CLIP3-206ENST00000593074 ANKARQ7Z5J8 1434 aa25.33■■□□□ 1.65
CLIP3-206ENST00000593074 HMOX1P09601 288 aa25.33■■□□□ 1.65
CLIP3-206ENST00000593074 PHACTR3Q96KR7 559 aa25.32■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms