RNA–Protein interactions for RNA: ENST00000588323.1

VPS4B-203, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 3

Gene VPS4B, Length 463 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-203ENST00000588323 WFS1O76024 890 aa8.52□□□□□ -1.05
VPS4B-203ENST00000588323 VARSP26640 1264 aaKnown RBP8.52□□□□□ -1.05
VPS4B-203ENST00000588323 TLL2Q9Y6L7 1015 aa8.52□□□□□ -1.05
VPS4B-203ENST00000588323 PLEKHG3A1L390 1219 aa8.51□□□□□ -1.05
VPS4B-203ENST00000588323 CAPN5O15484 640 aaPredicted RBP8.51□□□□□ -1.05
VPS4B-203ENST00000588323 LCE2AQ5TA79 106 aaPredicted RBP8.51□□□□□ -1.05
VPS4B-203ENST00000588323 CABLES1Q8TDN4 633 aa8.51□□□□□ -1.05
VPS4B-203ENST00000588323 SLC24A3Q9HC58 644 aa8.51□□□□□ -1.05
VPS4B-203ENST00000588323 NUTM2BA6NNL0 878 aaPredicted RBP8.49□□□□□ -1.05
VPS4B-203ENST00000588323 NUTM2EB1AL46 878 aaPredicted RBP8.49□□□□□ -1.05
VPS4B-203ENST00000588323 NUTM2DQ5VT03 806 aaPredicted RBP8.49□□□□□ -1.05
VPS4B-203ENST00000588323 MYSM1Q5VVJ2 828 aa8.49□□□□□ -1.05
VPS4B-203ENST00000588323 NUTM2AQ8IVF1 878 aaPredicted RBP8.49□□□□□ -1.05
VPS4B-203ENST00000588323 TSC1Q92574 1164 aa8.49□□□□□ -1.05
VPS4B-203ENST00000588323 BMP1P13497 986 aa8.48□□□□□ -1.05
VPS4B-203ENST00000588323 NFX1Q12986 1120 aaKnown RBP8.48□□□□□ -1.05
VPS4B-203ENST00000588323 MPNDQ8N594 471 aa8.48□□□□□ -1.05
VPS4B-203ENST00000588323 FAM174AQ8TBP5 190 aa8.48□□□□□ -1.05
VPS4B-203ENST00000588323 MAP10Q9P2G4 905 aa8.48□□□□□ -1.05
VPS4B-203ENST00000588323 LIMD1Q9UGP4 676 aa8.48□□□□□ -1.05
VPS4B-203ENST00000588323 F12P00748 615 aaPredicted RBP8.47□□□□□ -1.05
VPS4B-203ENST00000588323 TERTO14746 1132 aaKnown RBP8.46□□□□□ -1.06
VPS4B-203ENST00000588323 NNTQ13423 1086 aa8.46□□□□□ -1.06
VPS4B-203ENST00000588323 TUSC1Q2TAM9 212 aa8.46□□□□□ -1.06
VPS4B-203ENST00000588323 PER1O15534 1290 aaPredicted RBP8.45□□□□□ -1.06
VPS4B-203ENST00000588323 AGERQ15109 404 aa8.45□□□□□ -1.06
VPS4B-203ENST00000588323 QPCTQ16769 361 aa8.45□□□□□ -1.06
VPS4B-203ENST00000588323 TRIM46Q7Z4K8 759 aa8.45□□□□□ -1.06
VPS4B-203ENST00000588323 FOXJ1Q92949 421 aa8.45□□□□□ -1.06
VPS4B-203ENST00000588323 LILRB3O75022 631 aa8.44□□□□□ -1.06
VPS4B-203ENST00000588323 CLK2P49760 499 aaKnown RBP8.44□□□□□ -1.06
VPS4B-203ENST00000588323 ADH1CP00326 375 aa8.43□□□□□ -1.06
VPS4B-203ENST00000588323 ARID5BQ14865 1188 aa8.43□□□□□ -1.06
VPS4B-203ENST00000588323 ARMC2Q8NEN0 867 aa8.43□□□□□ -1.06
VPS4B-203ENST00000588323 HELBQ8NG08 1087 aaPredicted RBP8.43□□□□□ -1.06
VPS4B-203ENST00000588323 RSPH6AQ9H0K4 717 aa8.43□□□□□ -1.06
VPS4B-203ENST00000588323 BPHLQ86WA6 291 aaPredicted RBP8.42□□□□□ -1.06
VPS4B-203ENST00000588323 WDR4P57081 412 aaKnown RBP8.41□□□□□ -1.06
VPS4B-203ENST00000588323 CDK15Q96Q40 435 aa8.41□□□□□ -1.06
VPS4B-203ENST00000588323 WIPF1O43516 503 aa8.4□□□□□ -1.06
VPS4B-203ENST00000588323 RTL5Q5HYW3 569 aaPredicted RBP8.4□□□□□ -1.06
VPS4B-203ENST00000588323 ZFP42Q96MM3 310 aa8.4□□□□□ -1.06
VPS4B-203ENST00000588323 POLR3EQ9NVU0 708 aa8.4□□□□□ -1.06
VPS4B-203ENST00000588323 TIMP2P16035 220 aa8.39□□□□□ -1.07
VPS4B-203ENST00000588323 SCARF1Q14162 830 aa8.39□□□□□ -1.07
VPS4B-203ENST00000588323 NBPF14Q5TI25 921 aa8.39□□□□□ -1.07
VPS4B-203ENST00000588323 MRPL14Q6P1L8 145 aaKnown RBP8.39□□□□□ -1.07
VPS4B-203ENST00000588323 SLC16A10Q8TF71 515 aa8.39□□□□□ -1.07
VPS4B-203ENST00000588323 NXF1Q9UBU9 619 aaKnown RBP8.39□□□□□ -1.07
VPS4B-203ENST00000588323 INSM1Q01101 510 aaPredicted RBP8.38□□□□□ -1.07
VPS4B-203ENST00000588323 NR5A1Q13285 461 aa8.38□□□□□ -1.07
VPS4B-203ENST00000588323 C4orf48Q5BLP8 95 aa8.38□□□□□ -1.07
VPS4B-203ENST00000588323 ZIC2O95409 532 aaPredicted RBP8.37□□□□□ -1.07
VPS4B-203ENST00000588323 LCE2CQ5TA81 110 aa8.36□□□□□ -1.07
VPS4B-203ENST00000588323 PURBQ96QR8 312 aaKnown RBP8.36□□□□□ -1.07
VPS4B-203ENST00000588323 KLF16Q9BXK1 252 aaPredicted RBP8.36□□□□□ -1.07
VPS4B-203ENST00000588323 NR3C2P08235 984 aa8.35□□□□□ -1.07
VPS4B-203ENST00000588323 NPAS3Q8IXF0 933 aa8.35□□□□□ -1.07
VPS4B-203ENST00000588323 ZFAND3Q9H8U3 227 aa8.35□□□□□ -1.07
VPS4B-203ENST00000588323 STK17AQ9UEE5 414 aa8.35□□□□□ -1.07
VPS4B-203ENST00000588323 ATP1B4Q9UN42 357 aaPredicted RBP8.35□□□□□ -1.07
VPS4B-203ENST00000588323 MAGEB6P1A0A0J9YX57 407 aa8.34□□□□□ -1.07
VPS4B-203ENST00000588323 GRM5P41594 1212 aa8.34□□□□□ -1.07
VPS4B-203ENST00000588323 SH3RF1Q7Z6J0 888 aa8.34□□□□□ -1.07
VPS4B-203ENST00000588323 GPKOWQ92917 476 aaPredicted RBP eCLIP8.34□□□□□ -1.07
VPS4B-203ENST00000588323 ITPKCQ96DU7 683 aa8.34□□□□□ -1.07
VPS4B-203ENST00000588323 C1QTNF2Q9BXJ5 285 aa8.34□□□□□ -1.07
VPS4B-203ENST00000588323 FSHRP23945 695 aa8.33□□□□□ -1.08
VPS4B-203ENST00000588323 VEGFBP49765 207 aa8.33□□□□□ -1.08
VPS4B-203ENST00000588323 CTDSPL2Q05D32 466 aa8.33□□□□□ -1.08
VPS4B-203ENST00000588323 SH3BP5LQ7L8J4 393 aa8.33□□□□□ -1.08
VPS4B-203ENST00000588323 IRF7Q92985 503 aa8.33□□□□□ -1.08
VPS4B-203ENST00000588323 H3BM21 787 aa8.32□□□□□ -1.08
VPS4B-203ENST00000588323 UPP2O95045 317 aa8.32□□□□□ -1.08
VPS4B-203ENST00000588323 SKIV2LQ15477 1246 aaKnown RBP8.32□□□□□ -1.08
VPS4B-203ENST00000588323 VASH1Q7L8A9 365 aaPredicted RBP8.32□□□□□ -1.08
VPS4B-203ENST00000588323 TRMT44Q8IYL2 757 aaKnown RBP8.32□□□□□ -1.08
VPS4B-203ENST00000588323 CARD14Q9BXL6 1004 aa8.32□□□□□ -1.08
VPS4B-203ENST00000588323 KDM4CQ9H3R0 1056 aa8.32□□□□□ -1.08
VPS4B-203ENST00000588323 MAP4K5Q9Y4K4 846 aa8.32□□□□□ -1.08
VPS4B-203ENST00000588323 SH3D19Q5HYK7 790 aa8.31□□□□□ -1.08
VPS4B-203ENST00000588323 C6orf118Q5T5N4 469 aa8.31□□□□□ -1.08
VPS4B-203ENST00000588323 BCANQ96GW7 911 aa8.31□□□□□ -1.08
VPS4B-203ENST00000588323 DDRGK1Q96HY6 314 aa8.31□□□□□ -1.08
VPS4B-203ENST00000588323 GPBP1L1Q9HC44 474 aaPredicted RBP8.31□□□□□ -1.08
VPS4B-203ENST00000588323 SOBPA7XYQ1 873 aa8.29□□□□□ -1.08
VPS4B-203ENST00000588323 MAN1A2O60476 641 aa8.29□□□□□ -1.08
VPS4B-203ENST00000588323 BMP2P12643 396 aa8.29□□□□□ -1.08
VPS4B-203ENST00000588323 GMPRP36959 345 aa8.29□□□□□ -1.08
VPS4B-203ENST00000588323 ERFEQ4G0M1 354 aa8.29□□□□□ -1.08
VPS4B-203ENST00000588323 LRRN4Q8WUT4 740 aa8.29□□□□□ -1.08
VPS4B-203ENST00000588323 ARHGAP9Q9BRR9 750 aa8.29□□□□□ -1.08
VPS4B-203ENST00000588323 FAM117AQ9C073 453 aa8.29□□□□□ -1.08
VPS4B-203ENST00000588323 PDXDC2PQ6P474 469 aa8.28□□□□□ -1.08
VPS4B-203ENST00000588323 CCDC116Q8IYX3 515 aa8.28□□□□□ -1.08
VPS4B-203ENST00000588323 LINC00528Q8N1L1 170 aa8.28□□□□□ -1.08
VPS4B-203ENST00000588323 MEIOBQ8N635 442 aa8.28□□□□□ -1.08
VPS4B-203ENST00000588323 PROCA1Q8NCQ7 364 aaPredicted RBP8.28□□□□□ -1.08
VPS4B-203ENST00000588323 FKBPLQ9UIM3 349 aa8.28□□□□□ -1.08
VPS4B-203ENST00000588323 EMILIN1Q9Y6C2 1016 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms