RNA–Protein interactions for RNA: ENST00000586245.5

VMP1-203, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 544 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-203ENST00000586245 LMOD2Q6P5Q4 547 aa18.72■□□□□ 0.59
VMP1-203ENST00000586245 NSD3Q9BZ95 1437 aa18.72■□□□□ 0.59
VMP1-203ENST00000586245 TTC21BQ7Z4L5 1316 aa18.72■□□□□ 0.59
VMP1-203ENST00000586245 TTC21AQ8NDW8 1320 aa18.72■□□□□ 0.59
VMP1-203ENST00000586245 HSPA1LP34931 641 aa18.71■□□□□ 0.59
VMP1-203ENST00000586245 DDX10Q13206 875 aaKnown RBP18.71■□□□□ 0.59
VMP1-203ENST00000586245 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.71■□□□□ 0.59
VMP1-203ENST00000586245 CARD14Q9BXL6 1004 aa18.71■□□□□ 0.59
VMP1-203ENST00000586245 TNS3Q68CZ2 1445 aa18.71■□□□□ 0.59
VMP1-203ENST00000586245 SSH2Q76I76 1423 aa18.71■□□□□ 0.59
VMP1-203ENST00000586245 SPATA31A3Q5VYP0 1347 aa18.71■□□□□ 0.59
VMP1-203ENST00000586245 KNSTRNQ9Y448 316 aa18.7■□□□□ 0.58
VMP1-203ENST00000586245 COL16A1Q07092 1604 aaPredicted RBP18.7■□□□□ 0.58
VMP1-203ENST00000586245 ARHGEF10O15013 1369 aa18.69■□□□□ 0.58
VMP1-203ENST00000586245 TRPM3Q9HCF6 1732 aaPredicted RBP18.69■□□□□ 0.58
VMP1-203ENST00000586245 NRKQ7Z2Y5 1582 aa18.69■□□□□ 0.58
VMP1-203ENST00000586245 ABTB2Q8N961 1025 aa18.69■□□□□ 0.58
VMP1-203ENST00000586245 CGNL1Q0VF96 1302 aa18.67■□□□□ 0.58
VMP1-203ENST00000586245 NLRP6P59044 892 aa18.65■□□□□ 0.58
VMP1-203ENST00000586245 NLRP13Q86W25 1043 aa18.65■□□□□ 0.58
VMP1-203ENST00000586245 NME9Q86XW9 330 aa18.65■□□□□ 0.58
VMP1-203ENST00000586245 ALS2Q96Q42 1657 aa18.65■□□□□ 0.58
VMP1-203ENST00000586245 JCADQ9P266 1359 aa18.65■□□□□ 0.58
VMP1-203ENST00000586245 PER1O15534 1290 aaPredicted RBP18.64■□□□□ 0.57
VMP1-203ENST00000586245 NUTM2GQ5VZR2 741 aa18.64■□□□□ 0.57
VMP1-203ENST00000586245 FYB1O15117 783 aa18.63■□□□□ 0.57
VMP1-203ENST00000586245 PNPLA6Q8IY17 1366 aa18.63■□□□□ 0.57
VMP1-203ENST00000586245 PIK3C2AO00443 1686 aa18.63■□□□□ 0.57
VMP1-203ENST00000586245 PLEKHG5O94827 1062 aa18.62■□□□□ 0.57
VMP1-203ENST00000586245 COG3Q96JB2 828 aa18.62■□□□□ 0.57
VMP1-203ENST00000586245 GGNBP2Q9H3C7 697 aa18.62■□□□□ 0.57
VMP1-203ENST00000586245 NSD2O96028 1365 aa18.61■□□□□ 0.57
VMP1-203ENST00000586245 USP31Q70CQ4 1352 aa18.61■□□□□ 0.57
VMP1-203ENST00000586245 KIF20BQ96Q89 1820 aa18.6■□□□□ 0.57
VMP1-203ENST00000586245 HAP1P54257 671 aaPredicted RBP18.6■□□□□ 0.57
VMP1-203ENST00000586245 ZRANB1Q9UGI0 708 aa18.6■□□□□ 0.57
VMP1-203ENST00000586245 SHPRHQ149N8 1683 aa18.6■□□□□ 0.57
VMP1-203ENST00000586245 AMER1Q5JTC6 1135 aaPredicted RBP18.59■□□□□ 0.57
VMP1-203ENST00000586245 OVOS2A0A0J9YW53 1432 aa18.58■□□□□ 0.57
VMP1-203ENST00000586245 OVOS2Q6IE36 1432 aa18.58■□□□□ 0.57
VMP1-203ENST00000586245 COL22A1Q8NFW1 1626 aaPredicted RBP18.58■□□□□ 0.56
VMP1-203ENST00000586245 MED1Q15648 1581 aaPredicted RBP18.58■□□□□ 0.56
VMP1-203ENST00000586245 NPC1L1Q9UHC9 1359 aa18.57■□□□□ 0.56
VMP1-203ENST00000586245 USP19O94966 1318 aa18.57■□□□□ 0.56
VMP1-203ENST00000586245 SPATA31A6Q5VVP1 1343 aa18.57■□□□□ 0.56
VMP1-203ENST00000586245 CNGB1Q14028 1251 aaPredicted RBP18.57■□□□□ 0.56
VMP1-203ENST00000586245 CC2D1BQ5T0F9 858 aaKnown RBP18.57■□□□□ 0.56
VMP1-203ENST00000586245 KCNH5Q8NCM2 988 aa18.57■□□□□ 0.56
VMP1-203ENST00000586245 CABLES1Q8TDN4 633 aa18.57■□□□□ 0.56
VMP1-203ENST00000586245 ILDR1Q86SU0 546 aaPredicted RBP18.56■□□□□ 0.56
VMP1-203ENST00000586245 MORC1Q86VD1 984 aa18.56■□□□□ 0.56
VMP1-203ENST00000586245 USP54Q70EL1 1684 aa18.56■□□□□ 0.56
VMP1-203ENST00000586245 NUTM2BA6NNL0 878 aaPredicted RBP18.55■□□□□ 0.56
VMP1-203ENST00000586245 NUTM2EB1AL46 878 aaPredicted RBP18.55■□□□□ 0.56
VMP1-203ENST00000586245 GCP02774 474 aa18.55■□□□□ 0.56
VMP1-203ENST00000586245 NUTM2AQ8IVF1 878 aaPredicted RBP18.55■□□□□ 0.56
VMP1-203ENST00000586245 SLIT3O75094 1523 aa18.54■□□□□ 0.56
VMP1-203ENST00000586245 SOX12O15370 315 aa18.54■□□□□ 0.56
VMP1-203ENST00000586245 PHRF1Q9P1Y6 1649 aaKnown RBP18.53■□□□□ 0.56
VMP1-203ENST00000586245 ANKRD26Q9UPS8 1709 aa18.53■□□□□ 0.56
VMP1-203ENST00000586245 MARF1Q9Y4F3 1742 aaKnown RBP18.52■□□□□ 0.55
VMP1-203ENST00000586245 TNNT2P45379 298 aaPredicted RBP18.51■□□□□ 0.55
VMP1-203ENST00000586245 ZC3H6P61129 1189 aaKnown RBP18.51■□□□□ 0.55
VMP1-203ENST00000586245 ABCA3Q99758 1704 aa18.51■□□□□ 0.55
VMP1-203ENST00000586245 CRYBG1Q9Y4K1 1723 aa18.51■□□□□ 0.55
VMP1-203ENST00000586245 ADAMTS2O95450 1211 aa18.49■□□□□ 0.55
VMP1-203ENST00000586245 ZBTB7CA1YPR0 619 aa18.48■□□□□ 0.55
VMP1-203ENST00000586245 MEX3CQ5U5Q3 659 aaKnown RBP18.48■□□□□ 0.55
VMP1-203ENST00000586245 NFAT5O94916 1531 aa18.48■□□□□ 0.55
VMP1-203ENST00000586245 AATKQ6ZMQ8 1374 aa18.47■□□□□ 0.55
VMP1-203ENST00000586245 PRDM11Q9NQV5 511 aa18.47■□□□□ 0.55
VMP1-203ENST00000586245 CPDO75976 1380 aa18.46■□□□□ 0.55
VMP1-203ENST00000586245 KIAA0232Q92628 1395 aa18.46■□□□□ 0.55
VMP1-203ENST00000586245 ANP32CO43423 234 aa18.46■□□□□ 0.55
VMP1-203ENST00000586245 RALBP1Q15311 655 aa18.46■□□□□ 0.55
VMP1-203ENST00000586245 LRP6O75581 1613 aa18.45■□□□□ 0.54
VMP1-203ENST00000586245 FBLN1P23142 703 aa18.45■□□□□ 0.54
VMP1-203ENST00000586245 RRS1Q15050 365 aaKnown RBP18.45■□□□□ 0.54
VMP1-203ENST00000586245 ARHGEF25Q86VW2 580 aa18.45■□□□□ 0.54
VMP1-203ENST00000586245 PARD3Q8TEW0 1356 aa18.44■□□□□ 0.54
VMP1-203ENST00000586245 AMPHP49418 695 aa18.44■□□□□ 0.54
VMP1-203ENST00000586245 MAP3K19Q56UN5 1328 aa18.44■□□□□ 0.54
VMP1-203ENST00000586245 CHRNA2Q15822 529 aa18.43■□□□□ 0.54
VMP1-203ENST00000586245 DIEXFQ68CQ4 756 aaKnown RBP18.43■□□□□ 0.54
VMP1-203ENST00000586245 PRKRIP1Q9H875 184 aaPredicted RBP18.43■□□□□ 0.54
VMP1-203ENST00000586245 FAM83GA6ND36 823 aa18.42■□□□□ 0.54
VMP1-203ENST00000586245 PPM1GO15355 546 aaPredicted RBP18.42■□□□□ 0.54
VMP1-203ENST00000586245 C8orf37Q96NL8 207 aa18.42■□□□□ 0.54
VMP1-203ENST00000586245 POLKQ9UBT6 870 aa18.42■□□□□ 0.54
VMP1-203ENST00000586245 EMILIN1Q9Y6C2 1016 aa18.42■□□□□ 0.54
VMP1-203ENST00000586245 NGLY1Q96IV0 654 aa18.41■□□□□ 0.54
VMP1-203ENST00000586245 RTL1A6NKG5 1358 aa18.41■□□□□ 0.54
VMP1-203ENST00000586245 KIF24Q5T7B8 1368 aa18.41■□□□□ 0.54
VMP1-203ENST00000586245 PPP2R1AP30153 589 aa18.4■□□□□ 0.54
VMP1-203ENST00000586245 LTN1O94822 1766 aa18.4■□□□□ 0.54
VMP1-203ENST00000586245 COL14A1Q05707 1796 aaKnown RBP18.4■□□□□ 0.54
VMP1-203ENST00000586245 IP6K1Q92551 441 aa18.39■□□□□ 0.53
VMP1-203ENST00000586245 MYBBP1AQ9BQG0 1328 aaKnown RBP18.39■□□□□ 0.53
VMP1-203ENST00000586245 FLT4P35916 1363 aa18.39■□□□□ 0.53
VMP1-203ENST00000586245 ABCC6O95255 1503 aa18.39■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 210.7 ms