RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 ZNF142P52746 1687 aaPredicted RBP15.7■□□□□ 0.1
SS18-221ENST00000582448 THEMISQ8N1K5 641 aaPredicted RBP15.7■□□□□ 0.1
SS18-221ENST00000582448 MBD5Q9P267 1494 aa15.69■□□□□ 0.1
SS18-221ENST00000582448 DNMT1P26358 1616 aaKnown RBP15.68■□□□□ 0.1
SS18-221ENST00000582448 RTEL1-TNFRSF6BF6WH68 1400 aa15.68■□□□□ 0.1
SS18-221ENST00000582448 SHANK2Q9UPX8 1470 aa15.67■□□□□ 0.1
SS18-221ENST00000582448 RABGEF1Q9UJ41 708 aa15.67■□□□□ 0.1
SS18-221ENST00000582448 ADGBQ8N7X0 1667 aa15.67■□□□□ 0.1
SS18-221ENST00000582448 TSPY4P0CV99 314 aa15.66■□□□□ 0.1
SS18-221ENST00000582448 TSPY10P0CW01 314 aa15.66■□□□□ 0.1
SS18-221ENST00000582448 STAC3Q96MF2 364 aa15.66■□□□□ 0.1
SS18-221ENST00000582448 KIAA1468Q9P260 1216 aa15.66■□□□□ 0.1
SS18-221ENST00000582448 TRIM6-TRIM34B2RNG4 842 aa15.65■□□□□ 0.1
SS18-221ENST00000582448 TIAM1Q13009 1591 aa15.65■□□□□ 0.1
SS18-221ENST00000582448 RSPH4AQ5TD94 716 aa15.64■□□□□ 0.09
SS18-221ENST00000582448 MIA2Q96PC5 1412 aa15.64■□□□□ 0.09
SS18-221ENST00000582448 TSKSQ9UJT2 592 aa15.64■□□□□ 0.09
SS18-221ENST00000582448 CPS1P31327 1500 aa15.63■□□□□ 0.09
SS18-221ENST00000582448 TESPA1A2RU30 521 aaPredicted RBP15.63■□□□□ 0.09
SS18-221ENST00000582448 ONECUT3O60422 494 aaPredicted RBP15.63■□□□□ 0.09
SS18-221ENST00000582448 NPDC1Q9NQX5 325 aaPredicted RBP15.63■□□□□ 0.09
SS18-221ENST00000582448 FAM198AQ9UFP1 575 aa15.63■□□□□ 0.09
SS18-221ENST00000582448 NPHP4O75161 1426 aaPredicted RBP15.62■□□□□ 0.09
SS18-221ENST00000582448 MRPL50Q8N5N7 158 aaKnown RBP15.62■□□□□ 0.09
SS18-221ENST00000582448 KCTD12Q96CX2 325 aaKnown RBP15.62■□□□□ 0.09
SS18-221ENST00000582448 PZPP20742 1482 aa15.62■□□□□ 0.09
SS18-221ENST00000582448 MED1Q15648 1581 aaPredicted RBP15.62■□□□□ 0.09
SS18-221ENST00000582448 CCDC141Q6ZP82 1450 aa15.61■□□□□ 0.09
SS18-221ENST00000582448 CDCA7LQ96GN5 454 aa15.61■□□□□ 0.09
SS18-221ENST00000582448 NBPF3Q9H094 633 aa15.61■□□□□ 0.09
SS18-221ENST00000582448 EHBP1L1Q8N3D4 1523 aa15.61■□□□□ 0.09
SS18-221ENST00000582448 KDM5DQ9BY66 1539 aa15.6■□□□□ 0.09
SS18-221ENST00000582448 FAM135AQ9P2D6 1515 aa15.6■□□□□ 0.09
SS18-221ENST00000582448 PRSS12P56730 875 aa15.6■□□□□ 0.09
SS18-221ENST00000582448 TRIM26Q12899 539 aaPredicted RBP15.6■□□□□ 0.09
SS18-221ENST00000582448 NEURL4Q96JN8 1562 aa15.6■□□□□ 0.09
SS18-221ENST00000582448 VPS8Q8N3P4 1428 aa15.6■□□□□ 0.09
SS18-221ENST00000582448 UGGT1Q9NYU2 1555 aa15.59■□□□□ 0.09
SS18-221ENST00000582448 CAMSAP2Q08AD1 1489 aa15.59■□□□□ 0.09
SS18-221ENST00000582448 SEPT9Q9UHD8 586 aaPredicted RBP15.58■□□□□ 0.08
SS18-221ENST00000582448 POLR1AO95602 1720 aaPredicted RBP15.57■□□□□ 0.08
SS18-221ENST00000582448 C3orf80F5H4A9 247 aa15.57■□□□□ 0.08
SS18-221ENST00000582448 NCOA2Q15596 1464 aa15.57■□□□□ 0.08
SS18-221ENST00000582448 NLRP1Q9C000 1473 aa15.57■□□□□ 0.08
SS18-221ENST00000582448 VWDEQ8N2E2 1590 aa15.55■□□□□ 0.08
SS18-221ENST00000582448 PCGF6Q9BYE7 350 aa15.55■□□□□ 0.08
SS18-221ENST00000582448 MED14O60244 1454 aa15.53■□□□□ 0.08
SS18-221ENST00000582448 GOLGA8CPA6NN73 597 aa15.53■□□□□ 0.08
SS18-221ENST00000582448 TXNDC2Q86VQ3 553 aa15.53■□□□□ 0.08
SS18-221ENST00000582448 RBM26Q5T8P6 1007 aaKnown RBP15.52■□□□□ 0.08
SS18-221ENST00000582448 PACS2Q86VP3 889 aa15.52■□□□□ 0.08
SS18-221ENST00000582448 WNT2BQ93097 391 aa15.52■□□□□ 0.08
SS18-221ENST00000582448 NUTM2FA1L443 756 aa15.51■□□□□ 0.07
SS18-221ENST00000582448 PTGDRQ13258 359 aa15.51■□□□□ 0.07
SS18-221ENST00000582448 PADI6Q6TGC4 694 aa15.51■□□□□ 0.07
SS18-221ENST00000582448 LAPTM4BQ86VI4 370 aa15.51■□□□□ 0.07
SS18-221ENST00000582448 LRRC7Q96NW7 1537 aa15.51■□□□□ 0.07
SS18-221ENST00000582448 SMAPO00193 183 aa15.5■□□□□ 0.07
SS18-221ENST00000582448 LTKP29376 864 aa15.5■□□□□ 0.07
SS18-221ENST00000582448 TTC13Q8NBP0 860 aa15.5■□□□□ 0.07
SS18-221ENST00000582448 THSD4Q6ZMP0 1018 aa15.49■□□□□ 0.07
SS18-221ENST00000582448 RBM27Q9P2N5 1060 aaKnown RBP15.49■□□□□ 0.07
SS18-221ENST00000582448 DEPDC5O75140 1603 aa15.49■□□□□ 0.07
SS18-221ENST00000582448 ALKQ9UM73 1620 aa15.49■□□□□ 0.07
SS18-221ENST00000582448 IQGAP1P46940 1657 aa15.48■□□□□ 0.07
SS18-221ENST00000582448 ZFRQ96KR1 1074 aaKnown RBP15.48■□□□□ 0.07
SS18-221ENST00000582448 HCSTQ9UBK5 93 aa15.48■□□□□ 0.07
SS18-221ENST00000582448 EID1Q9Y6B2 187 aa15.48■□□□□ 0.07
SS18-221ENST00000582448 ABCC3O15438 1527 aa15.48■□□□□ 0.07
SS18-221ENST00000582448 ERVK-7P63135 1459 aa15.47■□□□□ 0.07
SS18-221ENST00000582448 FAM98CQ17RN3 349 aaKnown RBP15.47■□□□□ 0.07
SS18-221ENST00000582448 TATDN2Q93075 761 aa15.47■□□□□ 0.07
SS18-221ENST00000582448 CFAP65Q6ZU64 1925 aaKnown RBP15.47■□□□□ 0.07
SS18-221ENST00000582448 ARHGEF5Q12774 1597 aa15.46■□□□□ 0.07
SS18-221ENST00000582448 PTPN5P54829 565 aa15.46■□□□□ 0.07
SS18-221ENST00000582448 KANK4Q5T7N3 995 aaPredicted RBP15.46■□□□□ 0.07
SS18-221ENST00000582448 SMYD5Q6GMV2 418 aa15.46■□□□□ 0.07
SS18-221ENST00000582448 PPARGC1BQ86YN6 1023 aaKnown RBP15.46■□□□□ 0.07
SS18-221ENST00000582448 RRP7BPQ9NSQ0 103 aa15.46■□□□□ 0.07
SS18-221ENST00000582448 PNMA3Q9UL41 463 aa15.46■□□□□ 0.07
SS18-221ENST00000582448 STRCP1A6NGW2 1772 aa15.45■□□□□ 0.06
SS18-221ENST00000582448 RGS17Q9UGC6 210 aaPredicted RBP15.45■□□□□ 0.06
SS18-221ENST00000582448 NUDT18Q6ZVK8 323 aa15.44■□□□□ 0.06
SS18-221ENST00000582448 SCAF11Q99590 1463 aaKnown RBP15.44■□□□□ 0.06
SS18-221ENST00000582448 ANKK1Q8NFD2 765 aa15.43■□□□□ 0.06
SS18-221ENST00000582448 LRRC9Q6ZRR7 1453 aa15.42■□□□□ 0.06
SS18-221ENST00000582448 NBPF26B4DH59 902 aa15.42■□□□□ 0.06
SS18-221ENST00000582448 BCAMP50895 628 aa15.42■□□□□ 0.06
SS18-221ENST00000582448 BCANQ96GW7 911 aa15.42■□□□□ 0.06
SS18-221ENST00000582448 RNF17Q9BXT8 1623 aaKnown RBP15.4■□□□□ 0.06
SS18-221ENST00000582448 PROSER2Q86WR7 435 aaPredicted RBP15.4■□□□□ 0.06
SS18-221ENST00000582448 SLC26A8Q96RN1 970 aa15.4■□□□□ 0.06
SS18-221ENST00000582448 SOWAHBA6NEL2 793 aa15.39■□□□□ 0.05
SS18-221ENST00000582448 FCHSD2O94868 740 aa15.39■□□□□ 0.05
SS18-221ENST00000582448 POTEAQ6S8J7 498 aa15.39■□□□□ 0.05
SS18-221ENST00000582448 CHIC2Q9UKJ5 165 aa15.39■□□□□ 0.05
SS18-221ENST00000582448 CEP152O94986 1710 aa15.39■□□□□ 0.05
SS18-221ENST00000582448 ZC3H13Q5T200 1668 aaKnown RBP15.38■□□□□ 0.05
SS18-221ENST00000582448 KIF15Q9NS87 1388 aa15.38■□□□□ 0.05
SS18-221ENST00000582448 SYNMO15061 1565 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 108 ms