RNA–Protein interactions for RNA: ENST00000578557.1

PPP4R1-210, Transcript of protein phosphatase 4 regulatory subunit 1, human

TSL 4

Gene PPP4R1, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPP4R1-210	ENST00000578557	TULP4	Q9NRJ4	1543 aa		12.04	□□□□□ -0.48
PPP4R1-210	ENST00000578557	PNPLA6	Q8IY17	1366 aa		12.04	□□□□□ -0.48
PPP4R1-210	ENST00000578557	RALGAPB	Q86X10	1494 aa		12.03	□□□□□ -0.48
PPP4R1-210	ENST00000578557	FBXO3	Q9UK99	471 aa		12.03	□□□□□ -0.48
PPP4R1-210	ENST00000578557	POLR3A	O14802	1390 aa	Predicted RBP	12.03	□□□□□ -0.48
PPP4R1-210	ENST00000578557	NINL	Q9Y2I6	1382 aa		12.03	□□□□□ -0.48
PPP4R1-210	ENST00000578557	PRR29	P0C7W0	189 aa		12.02	□□□□□ -0.49
PPP4R1-210	ENST00000578557	TMF1	P82094	1093 aa		12.02	□□□□□ -0.49
PPP4R1-210	ENST00000578557	PMFBP1	Q8TBY8	1022 aa		12.02	□□□□□ -0.49
PPP4R1-210	ENST00000578557	HAP1	P54257	671 aa	Predicted RBP	12.01	□□□□□ -0.49
PPP4R1-210	ENST00000578557	NLRP13	Q86W25	1043 aa		12.01	□□□□□ -0.49
PPP4R1-210	ENST00000578557	FNBP4	Q8N3X1	1017 aa	Predicted RBP	12.01	□□□□□ -0.49
PPP4R1-210	ENST00000578557	NGLY1	Q96IV0	654 aa		12.01	□□□□□ -0.49
PPP4R1-210	ENST00000578557	TERF2IP	Q9NYB0	399 aa		12.01	□□□□□ -0.49
PPP4R1-210	ENST00000578557	DDX17	Q92841	729 aa	Known RBP	12	□□□□□ -0.49
PPP4R1-210	ENST00000578557	CABP1	Q9NZU7	370 aa		12	□□□□□ -0.49
PPP4R1-210	ENST00000578557	ACE	P12821	1306 aa		12	□□□□□ -0.49
PPP4R1-210	ENST00000578557	PRR36	Q9H6K5	1346 aa		12	□□□□□ -0.49
PPP4R1-210	ENST00000578557	NALCN	Q8IZF0	1738 aa		12	□□□□□ -0.49
PPP4R1-210	ENST00000578557	ST20-MTHFS	A0A0A6YYL1	179 aa		11.99	□□□□□ -0.49
PPP4R1-210	ENST00000578557	NUTM2B	A6NNL0	878 aa	Predicted RBP	11.99	□□□□□ -0.49
PPP4R1-210	ENST00000578557	NUTM2E	B1AL46	878 aa	Predicted RBP	11.99	□□□□□ -0.49
PPP4R1-210	ENST00000578557	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	11.99	□□□□□ -0.49
PPP4R1-210	ENST00000578557	NUTM2A	Q8IVF1	878 aa	Predicted RBP	11.99	□□□□□ -0.49
PPP4R1-210	ENST00000578557	CABP2	Q9NPB3	220 aa		11.99	□□□□□ -0.49
PPP4R1-210	ENST00000578557	TNS3	Q68CZ2	1445 aa		11.99	□□□□□ -0.49
PPP4R1-210	ENST00000578557	PXDN	Q92626	1479 aa		11.99	□□□□□ -0.49
PPP4R1-210	ENST00000578557	COL16A1	Q07092	1604 aa	Predicted RBP	11.99	□□□□□ -0.49
PPP4R1-210	ENST00000578557	PHLPP1	O60346	1717 aa		11.98	□□□□□ -0.49
PPP4R1-210	ENST00000578557	KIF1A	Q12756	1690 aa		11.98	□□□□□ -0.49
PPP4R1-210	ENST00000578557	TTC21A	Q8NDW8	1320 aa		11.98	□□□□□ -0.49
PPP4R1-210	ENST00000578557	PAK3	O75914	559 aa	Predicted RBP	11.98	□□□□□ -0.49
PPP4R1-210	ENST00000578557	EIF4G2	P78344	907 aa	Known RBP eCLIP	11.98	□□□□□ -0.49
PPP4R1-210	ENST00000578557	TRPC5	Q9UL62	973 aa	Predicted RBP	11.98	□□□□□ -0.49
PPP4R1-210	ENST00000578557	RXRB	P28702	533 aa		11.97	□□□□□ -0.49
PPP4R1-210	ENST00000578557	LMOD2	Q6P5Q4	547 aa		11.97	□□□□□ -0.49
PPP4R1-210	ENST00000578557	ABTB2	Q8N961	1025 aa		11.97	□□□□□ -0.49
PPP4R1-210	ENST00000578557	KCNH5	Q8NCM2	988 aa		11.97	□□□□□ -0.49
PPP4R1-210	ENST00000578557	ATP7B	P35670	1465 aa		11.96	□□□□□ -0.49
PPP4R1-210	ENST00000578557	PPIP5K1	Q6PFW1	1433 aa		11.96	□□□□□ -0.49
PPP4R1-210	ENST00000578557	FXR2	P51116	673 aa	Known RBP eCLIP	11.96	□□□□□ -0.49	6e-6	■■■■□ 25.8
PPP4R1-210	ENST00000578557	C8orf37	Q96NL8	207 aa		11.96	□□□□□ -0.49
PPP4R1-210	ENST00000578557	TESK2	Q96S53	571 aa		11.96	□□□□□ -0.49
PPP4R1-210	ENST00000578557	NHSL1	Q5SYE7	1610 aa		11.96	□□□□□ -0.5
PPP4R1-210	ENST00000578557	MED1	Q15648	1581 aa	Predicted RBP	11.96	□□□□□ -0.5
PPP4R1-210	ENST00000578557	FMN2	Q9NZ56	1722 aa		11.95	□□□□□ -0.5
PPP4R1-210	ENST00000578557	RBM6	P78332	1123 aa	Known RBP	11.95	□□□□□ -0.5
PPP4R1-210	ENST00000578557	XPC	Q01831	940 aa	Predicted RBP	11.95	□□□□□ -0.5
PPP4R1-210	ENST00000578557	QTRT2	Q9H974	415 aa	Known RBP	11.95	□□□□□ -0.5
PPP4R1-210	ENST00000578557	RGS17	Q9UGC6	210 aa	Predicted RBP	11.95	□□□□□ -0.5
PPP4R1-210	ENST00000578557	USP21	Q9UK80	565 aa		11.95	□□□□□ -0.5
PPP4R1-210	ENST00000578557	TRPM1	Q7Z4N2	1603 aa		11.95	□□□□□ -0.5
PPP4R1-210	ENST00000578557	USP47	Q96K76	1375 aa		11.94	□□□□□ -0.5
PPP4R1-210	ENST00000578557	AFF2	P51816	1311 aa		11.94	□□□□□ -0.5
PPP4R1-210	ENST00000578557	ADAMTS2	O95450	1211 aa		11.94	□□□□□ -0.5
PPP4R1-210	ENST00000578557	UNC5CL	Q8IV45	518 aa		11.94	□□□□□ -0.5
PPP4R1-210	ENST00000578557	SHPRH	Q149N8	1683 aa		11.94	□□□□□ -0.5
PPP4R1-210	ENST00000578557	SOCS7	O14512	581 aa		11.93	□□□□□ -0.5
PPP4R1-210	ENST00000578557	NLRP6	P59044	892 aa		11.92	□□□□□ -0.5
PPP4R1-210	ENST00000578557	PIP4P2	Q8N4L2	257 aa		11.92	□□□□□ -0.5
PPP4R1-210	ENST00000578557	TMC1	Q8TDI8	760 aa		11.92	□□□□□ -0.5
PPP4R1-210	ENST00000578557	GC	P02774	474 aa		11.91	□□□□□ -0.5
PPP4R1-210	ENST00000578557	USP6	P35125	1406 aa		11.91	□□□□□ -0.5
PPP4R1-210	ENST00000578557	CPSF1	Q10570	1443 aa	Known RBP	11.91	□□□□□ -0.5
PPP4R1-210	ENST00000578557	ARHGEF28	Q8N1W1	1705 aa	Known RBP	11.91	□□□□□ -0.5
PPP4R1-210	ENST00000578557	KTN1	Q86UP2	1357 aa	Known RBP	11.91	□□□□□ -0.5
PPP4R1-210	ENST00000578557	TTC21B	Q7Z4L5	1316 aa		11.9	□□□□□ -0.5
PPP4R1-210	ENST00000578557	CDK12	Q9NYV4	1490 aa	Predicted RBP	11.9	□□□□□ -0.5
PPP4R1-210	ENST00000578557	VPS72	Q15906	364 aa		11.9	□□□□□ -0.5
PPP4R1-210	ENST00000578557	POTEA	Q6S8J7	498 aa		11.9	□□□□□ -0.5
PPP4R1-210	ENST00000578557	CPD	O75976	1380 aa		11.9	□□□□□ -0.5
PPP4R1-210	ENST00000578557	USP19	O94966	1318 aa		11.89	□□□□□ -0.51
PPP4R1-210	ENST00000578557	C11orf95	C9JLR9	678 aa	Predicted RBP	11.89	□□□□□ -0.51
PPP4R1-210	ENST00000578557	ONECUT3	O60422	494 aa	Predicted RBP	11.89	□□□□□ -0.51
PPP4R1-210	ENST00000578557	GJD4	Q96KN9	370 aa	Predicted RBP	11.89	□□□□□ -0.51
PPP4R1-210	ENST00000578557	PRDM11	Q9NQV5	511 aa		11.89	□□□□□ -0.51
PPP4R1-210	ENST00000578557	COL22A1	Q8NFW1	1626 aa	Predicted RBP	11.89	□□□□□ -0.51
PPP4R1-210	ENST00000578557	SSH2	Q76I76	1423 aa		11.88	□□□□□ -0.51
PPP4R1-210	ENST00000578557	FAM83G	A6ND36	823 aa		11.88	□□□□□ -0.51
PPP4R1-210	ENST00000578557	SLC12A5	Q9H2X9	1139 aa		11.88	□□□□□ -0.51
PPP4R1-210	ENST00000578557	LRP6	O75581	1613 aa		11.88	□□□□□ -0.51
PPP4R1-210	ENST00000578557	USP31	Q70CQ4	1352 aa		11.88	□□□□□ -0.51
PPP4R1-210	ENST00000578557	CCDC125	Q86Z20	511 aa		11.87	□□□□□ -0.51
PPP4R1-210	ENST00000578557	THRAP3	Q9Y2W1	955 aa	Known RBP	11.87	□□□□□ -0.51
PPP4R1-210	ENST00000578557	EDC4	Q6P2E9	1401 aa	Known RBP	11.86	□□□□□ -0.51
PPP4R1-210	ENST00000578557	EVA1C	P58658	441 aa		11.86	□□□□□ -0.51
PPP4R1-210	ENST00000578557	ILDR2	Q71H61	639 aa		11.86	□□□□□ -0.51
PPP4R1-210	ENST00000578557	CABLES1	Q8TDN4	633 aa		11.86	□□□□□ -0.51
PPP4R1-210	ENST00000578557	ANKRD36B	Q8N2N9	1353 aa		11.86	□□□□□ -0.51
PPP4R1-210	ENST00000578557	SLIT2	O94813	1529 aa		11.86	□□□□□ -0.51
PPP4R1-210	ENST00000578557	PRKAR2A	P13861	404 aa	Known RBP	11.85	□□□□□ -0.51
PPP4R1-210	ENST00000578557	BTG4	Q9NY30	223 aa		11.85	□□□□□ -0.51
PPP4R1-210	ENST00000578557	USP32	Q8NFA0	1604 aa		11.85	□□□□□ -0.51
PPP4R1-210	ENST00000578557	BCL9L	Q86UU0	1499 aa		11.84	□□□□□ -0.51
PPP4R1-210	ENST00000578557	AATK	Q6ZMQ8	1374 aa		11.84	□□□□□ -0.51
PPP4R1-210	ENST00000578557	HSPA5	P11021	654 aa	Known RBP	11.84	□□□□□ -0.51
PPP4R1-210	ENST00000578557	VASP	P50552	380 aa	Predicted RBP	11.84	□□□□□ -0.51
PPP4R1-210	ENST00000578557	COG3	Q96JB2	828 aa		11.84	□□□□□ -0.51
PPP4R1-210	ENST00000578557	CDCA7	Q9BWT1	371 aa	Predicted RBP	11.84	□□□□□ -0.51
PPP4R1-210	ENST00000578557	CREBZF	Q9NS37	354 aa		11.84	□□□□□ -0.51

Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms