RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 KTN1Q86UP2 1357 aaKnown RBP11.85□□□□□ -0.51
NUP88-211ENST00000575976 ANKRD36BQ8N2N9 1353 aa11.85□□□□□ -0.51
NUP88-211ENST00000575976 LRRC59Q96AG4 307 aaKnown RBP11.85□□□□□ -0.51
NUP88-211ENST00000575976 PHLPP1O60346 1717 aa11.85□□□□□ -0.51
NUP88-211ENST00000575976 USP6P35125 1406 aa11.85□□□□□ -0.51
NUP88-211ENST00000575976 SBNO1A3KN83 1393 aa11.84□□□□□ -0.51
NUP88-211ENST00000575976 ZNF316A6NFI3 1004 aaPredicted RBP11.84□□□□□ -0.51
NUP88-211ENST00000575976 PAK3O75914 559 aaPredicted RBP11.84□□□□□ -0.51
NUP88-211ENST00000575976 PANK3Q9H999 370 aa11.84□□□□□ -0.51
NUP88-211ENST00000575976 COL16A1Q07092 1604 aaPredicted RBP11.84□□□□□ -0.51
NUP88-211ENST00000575976 MYOM1P52179 1685 aa11.84□□□□□ -0.51
NUP88-211ENST00000575976 SPATA31A6Q5VVP1 1343 aa11.84□□□□□ -0.51
NUP88-211ENST00000575976 SPATA31A3Q5VYP0 1347 aa11.84□□□□□ -0.51
NUP88-211ENST00000575976 RXRBP28702 533 aa11.83□□□□□ -0.52
NUP88-211ENST00000575976 CARD14Q9BXL6 1004 aa11.83□□□□□ -0.52
NUP88-211ENST00000575976 SSH2Q76I76 1423 aa11.83□□□□□ -0.52
NUP88-211ENST00000575976 TTC21BQ7Z4L5 1316 aa11.83□□□□□ -0.52
NUP88-211ENST00000575976 BRD4O60885 1362 aaPredicted RBP11.82□□□□□ -0.52
NUP88-211ENST00000575976 LMOD2Q6P5Q4 547 aa11.82□□□□□ -0.52
NUP88-211ENST00000575976 AKAP12Q02952 1782 aa11.82□□□□□ -0.52
NUP88-211ENST00000575976 TRPM3Q9HCF6 1732 aaPredicted RBP11.81□□□□□ -0.52
NUP88-211ENST00000575976 TNS3Q68CZ2 1445 aa11.81□□□□□ -0.52
NUP88-211ENST00000575976 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.81□□□□□ -0.52
NUP88-211ENST00000575976 PNPLA6Q8IY17 1366 aa11.8□□□□□ -0.52
NUP88-211ENST00000575976 MON2Q7Z3U7 1717 aa11.8□□□□□ -0.52
NUP88-211ENST00000575976 EDC4Q6P2E9 1401 aaKnown RBP11.8□□□□□ -0.52
NUP88-211ENST00000575976 NUTM2GQ5VZR2 741 aa11.8□□□□□ -0.52
NUP88-211ENST00000575976 ABTB2Q8N961 1025 aa11.8□□□□□ -0.52
NUP88-211ENST00000575976 TTC21AQ8NDW8 1320 aa11.8□□□□□ -0.52
NUP88-211ENST00000575976 NSD3Q9BZ95 1437 aa11.79□□□□□ -0.52
NUP88-211ENST00000575976 CDK12Q9NYV4 1490 aaPredicted RBP11.79□□□□□ -0.52
NUP88-211ENST00000575976 PLEKHG5O94827 1062 aa11.79□□□□□ -0.52
NUP88-211ENST00000575976 NME9Q86XW9 330 aa11.79□□□□□ -0.52
NUP88-211ENST00000575976 ZRANB1Q9UGI0 708 aa11.79□□□□□ -0.52
NUP88-211ENST00000575976 NRKQ7Z2Y5 1582 aa11.79□□□□□ -0.52
NUP88-211ENST00000575976 ARHGEF10O15013 1369 aa11.79□□□□□ -0.52
NUP88-211ENST00000575976 PER1O15534 1290 aaPredicted RBP11.78□□□□□ -0.52
NUP88-211ENST00000575976 NLRP6P59044 892 aa11.78□□□□□ -0.52
NUP88-211ENST00000575976 DDX10Q13206 875 aaKnown RBP11.78□□□□□ -0.52
NUP88-211ENST00000575976 CABLES1Q8TDN4 633 aa11.78□□□□□ -0.52
NUP88-211ENST00000575976 ALS2Q96Q42 1657 aa11.78□□□□□ -0.52
NUP88-211ENST00000575976 FYB1O15117 783 aa11.77□□□□□ -0.53
NUP88-211ENST00000575976 NLRP13Q86W25 1043 aa11.77□□□□□ -0.53
NUP88-211ENST00000575976 GGNBP2Q9H3C7 697 aa11.77□□□□□ -0.53
NUP88-211ENST00000575976 KNSTRNQ9Y448 316 aa11.76□□□□□ -0.53
NUP88-211ENST00000575976 USP31Q70CQ4 1352 aa11.76□□□□□ -0.53
NUP88-211ENST00000575976 NUTM2BA6NNL0 878 aaPredicted RBP11.75□□□□□ -0.53
NUP88-211ENST00000575976 NUTM2EB1AL46 878 aaPredicted RBP11.75□□□□□ -0.53
NUP88-211ENST00000575976 NUTM2AQ8IVF1 878 aaPredicted RBP11.75□□□□□ -0.53
NUP88-211ENST00000575976 CGNL1Q0VF96 1302 aa11.75□□□□□ -0.53
NUP88-211ENST00000575976 PIK3C2AO00443 1686 aa11.75□□□□□ -0.53
NUP88-211ENST00000575976 SHPRHQ149N8 1683 aa11.75□□□□□ -0.53
NUP88-211ENST00000575976 COG3Q96JB2 828 aa11.74□□□□□ -0.53
NUP88-211ENST00000575976 USP19O94966 1318 aa11.74□□□□□ -0.53
NUP88-211ENST00000575976 COL22A1Q8NFW1 1626 aaPredicted RBP11.74□□□□□ -0.53
NUP88-211ENST00000575976 OVOS2A0A0J9YW53 1432 aa11.73□□□□□ -0.53
NUP88-211ENST00000575976 HAP1P54257 671 aaPredicted RBP11.73□□□□□ -0.53
NUP88-211ENST00000575976 AMER1Q5JTC6 1135 aaPredicted RBP11.73□□□□□ -0.53
NUP88-211ENST00000575976 OVOS2Q6IE36 1432 aa11.73□□□□□ -0.53
NUP88-211ENST00000575976 LRP6O75581 1613 aa11.72□□□□□ -0.53
NUP88-211ENST00000575976 SOX12O15370 315 aa11.72□□□□□ -0.53
NUP88-211ENST00000575976 ADAMTS2O95450 1211 aa11.72□□□□□ -0.53
NUP88-211ENST00000575976 GCP02774 474 aa11.72□□□□□ -0.53
NUP88-211ENST00000575976 CNGB1Q14028 1251 aaPredicted RBP11.72□□□□□ -0.53
NUP88-211ENST00000575976 ZC3H6P61129 1189 aaKnown RBP11.71□□□□□ -0.53
NUP88-211ENST00000575976 CC2D1BQ5T0F9 858 aaKnown RBP11.71□□□□□ -0.53
NUP88-211ENST00000575976 SLIT3O75094 1523 aa11.7□□□□□ -0.54
NUP88-211ENST00000575976 MARF1Q9Y4F3 1742 aaKnown RBP11.7□□□□□ -0.54
NUP88-211ENST00000575976 FBLN1P23142 703 aa11.7□□□□□ -0.54
NUP88-211ENST00000575976 RBM6P78332 1123 aaKnown RBP11.7□□□□□ -0.54
NUP88-211ENST00000575976 KCNH5Q8NCM2 988 aa11.7□□□□□ -0.54
NUP88-211ENST00000575976 KIF20BQ96Q89 1820 aa11.7□□□□□ -0.54
NUP88-211ENST00000575976 CRYBG1Q9Y4K1 1723 aa11.69□□□□□ -0.54
NUP88-211ENST00000575976 NSD2O96028 1365 aa11.69□□□□□ -0.54
NUP88-211ENST00000575976 PHRF1Q9P1Y6 1649 aaKnown RBP11.69□□□□□ -0.54
NUP88-211ENST00000575976 MORC1Q86VD1 984 aa11.69□□□□□ -0.54
NUP88-211ENST00000575976 NGLY1Q96IV0 654 aa11.69□□□□□ -0.54
NUP88-211ENST00000575976 USP54Q70EL1 1684 aa11.68□□□□□ -0.54
NUP88-211ENST00000575976 NPC1L1Q9UHC9 1359 aa11.68□□□□□ -0.54
NUP88-211ENST00000575976 AFF2P51816 1311 aa11.68□□□□□ -0.54
NUP88-211ENST00000575976 ZBTB7CA1YPR0 619 aa11.68□□□□□ -0.54
NUP88-211ENST00000575976 MSH5O43196 834 aa11.68□□□□□ -0.54
NUP88-211ENST00000575976 QTRT2Q9H974 415 aaKnown RBP11.68□□□□□ -0.54
NUP88-211ENST00000575976 ABCA3Q99758 1704 aa11.68□□□□□ -0.54
NUP88-211ENST00000575976 KIAA0232Q92628 1395 aa11.67□□□□□ -0.54
NUP88-211ENST00000575976 FAM83GA6ND36 823 aa11.67□□□□□ -0.54
NUP88-211ENST00000575976 TNNT2P45379 298 aaPredicted RBP11.67□□□□□ -0.54
NUP88-211ENST00000575976 CHRNA2Q15822 529 aa11.67□□□□□ -0.54
NUP88-211ENST00000575976 ARHGEF25Q86VW2 580 aa11.67□□□□□ -0.54
NUP88-211ENST00000575976 CPDO75976 1380 aa11.67□□□□□ -0.54
NUP88-211ENST00000575976 NFAT5O94916 1531 aa11.66□□□□□ -0.54
NUP88-211ENST00000575976 RRS1Q15050 365 aaKnown RBP11.66□□□□□ -0.54
NUP88-211ENST00000575976 C8orf37Q96NL8 207 aa11.66□□□□□ -0.54
NUP88-211ENST00000575976 PRDM11Q9NQV5 511 aa11.66□□□□□ -0.54
NUP88-211ENST00000575976 MAP3K19Q56UN5 1328 aa11.65□□□□□ -0.54
NUP88-211ENST00000575976 CCDC125Q86Z20 511 aa11.65□□□□□ -0.54
NUP88-211ENST00000575976 AATKQ6ZMQ8 1374 aa11.65□□□□□ -0.55
NUP88-211ENST00000575976 ANKRD26Q9UPS8 1709 aa11.64□□□□□ -0.55
NUP88-211ENST00000575976 POLKQ9UBT6 870 aa11.64□□□□□ -0.55
NUP88-211ENST00000575976 RGS12O14924 1447 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms