RNA–Protein interactions for RNA: ENST00000573166.5

SMG6-213, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 1 (best)

Gene SMG6, Length 4,236 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-213ENST00000573166 PLEKHG1Q9ULL1 1385 aa12.87□□□□□ -0.35
SMG6-213ENST00000573166 TET3O43151 1660 aa12.87□□□□□ -0.35
SMG6-213ENST00000573166 METP08581 1390 aa12.87□□□□□ -0.35
SMG6-213ENST00000573166 TCERG1O14776 1098 aaKnown RBP12.86□□□□□ -0.35
SMG6-213ENST00000573166 NPHP4O75161 1426 aaPredicted RBP12.86□□□□□ -0.35
SMG6-213ENST00000573166 CHRNA2Q15822 529 aa12.86□□□□□ -0.35
SMG6-213ENST00000573166 TTC21AQ8NDW8 1320 aa12.86□□□□□ -0.35
SMG6-213ENST00000573166 PPP4R2Q9NY27 417 aa12.85□□□□□ -0.35
SMG6-213ENST00000573166 FCHSD2O94868 740 aa12.84□□□□□ -0.35
SMG6-213ENST00000573166 ZRANB1Q9UGI0 708 aa12.84□□□□□ -0.35
SMG6-213ENST00000573166 IQGAP3Q86VI3 1631 aa12.84□□□□□ -0.35
SMG6-213ENST00000573166 NBR1Q14596 966 aa12.84□□□□□ -0.35
SMG6-213ENST00000573166 CABLES1Q8TDN4 633 aa12.84□□□□□ -0.35
SMG6-213ENST00000573166 SPG7Q9UQ90 795 aa12.84□□□□□ -0.35
SMG6-213ENST00000573166 B4GALNT3Q6L9W6 998 aa12.84□□□□□ -0.35
SMG6-213ENST00000573166 USHBP1Q8N6Y0 703 aa12.84□□□□□ -0.35
SMG6-213ENST00000573166 SLAIN2Q9P270 581 aa12.84□□□□□ -0.35
SMG6-213ENST00000573166 CROCC2H7BZ55 1655 aa12.84□□□□□ -0.35
SMG6-213ENST00000573166 NSD2O96028 1365 aa12.84□□□□□ -0.35
SMG6-213ENST00000573166 INO80Q9ULG1 1556 aaPredicted RBP12.83□□□□□ -0.36
SMG6-213ENST00000573166 PLEKHH1Q9ULM0 1364 aa12.83□□□□□ -0.36
SMG6-213ENST00000573166 AMER1Q5JTC6 1135 aaPredicted RBP12.83□□□□□ -0.36
SMG6-213ENST00000573166 SIRT1Q96EB6 747 aa12.82□□□□□ -0.36
SMG6-213ENST00000573166 KIDINS220Q9ULH0 1771 aa12.82□□□□□ -0.36
SMG6-213ENST00000573166 GTF2E1P29083 439 aaPredicted RBP12.82□□□□□ -0.36
SMG6-213ENST00000573166 RGS3P49796 1198 aa12.82□□□□□ -0.36
SMG6-213ENST00000573166 CARD14Q9BXL6 1004 aa12.82□□□□□ -0.36
SMG6-213ENST00000573166 ABCA6Q8N139 1617 aa12.82□□□□□ -0.36
SMG6-213ENST00000573166 TMEM94Q12767 1356 aa12.82□□□□□ -0.36
SMG6-213ENST00000573166 KDM5CP41229 1560 aa12.82□□□□□ -0.36
SMG6-213ENST00000573166 APBB1O00213 710 aa12.81□□□□□ -0.36
SMG6-213ENST00000573166 MSH5O43196 834 aa12.81□□□□□ -0.36
SMG6-213ENST00000573166 LRRC59Q96AG4 307 aaKnown RBP12.81□□□□□ -0.36
SMG6-213ENST00000573166 UNC13BO14795 1591 aa12.81□□□□□ -0.36
SMG6-213ENST00000573166 A2ML1A8K2U0 1454 aa12.81□□□□□ -0.36
SMG6-213ENST00000573166 A0A1W2PP64 1363 aa12.81□□□□□ -0.36
SMG6-213ENST00000573166 HSP90AB2PQ58FF8 381 aa12.8□□□□□ -0.36
SMG6-213ENST00000573166 KIF1BO60333 1816 aa12.8□□□□□ -0.36
SMG6-213ENST00000573166 AGLP35573 1532 aa12.8□□□□□ -0.36
SMG6-213ENST00000573166 CDCA7LQ96GN5 454 aa12.8□□□□□ -0.36
SMG6-213ENST00000573166 CHMP3Q9Y3E7 222 aa12.8□□□□□ -0.36
SMG6-213ENST00000573166 ARHGEF40Q8TER5 1519 aa12.8□□□□□ -0.36
SMG6-213ENST00000573166 PLIN1O60240 522 aa12.79□□□□□ -0.36
SMG6-213ENST00000573166 ZNF335Q9H4Z2 1342 aaPredicted RBP12.79□□□□□ -0.36
SMG6-213ENST00000573166 GCP02774 474 aa12.79□□□□□ -0.36
SMG6-213ENST00000573166 ANP32AP39687 249 aaKnown RBP12.79□□□□□ -0.36
SMG6-213ENST00000573166 CABP4P57796 275 aa12.79□□□□□ -0.36
SMG6-213ENST00000573166 DDX17Q92841 729 aaKnown RBP12.79□□□□□ -0.36
SMG6-213ENST00000573166 HDAC5Q9UQL6 1122 aa12.79□□□□□ -0.36
SMG6-213ENST00000573166 RBM42Q9BTD8 480 aaKnown RBP12.79□□□□□ -0.36
SMG6-213ENST00000573166 ZKSCAN2Q63HK3 967 aa12.78□□□□□ -0.36
SMG6-213ENST00000573166 ANKRD24Q8TF21 1146 aa12.78□□□□□ -0.36
SMG6-213ENST00000573166 MYOM2P54296 1465 aa12.78□□□□□ -0.36
SMG6-213ENST00000573166 FKBP5Q13451 457 aaPredicted RBP12.78□□□□□ -0.36
SMG6-213ENST00000573166 PIK3C2GO75747 1445 aa12.78□□□□□ -0.36
SMG6-213ENST00000573166 RNF17Q9BXT8 1623 aaKnown RBP12.78□□□□□ -0.36
SMG6-213ENST00000573166 ROBO2Q9HCK4 1378 aa12.77□□□□□ -0.36
SMG6-213ENST00000573166 TMPOP42166 694 aaKnown RBP12.77□□□□□ -0.36
SMG6-213ENST00000573166 NFE2L2Q16236 605 aa12.77□□□□□ -0.36
SMG6-213ENST00000573166 CEP152O94986 1710 aa12.77□□□□□ -0.37
SMG6-213ENST00000573166 HSP90AB1P08238 724 aaKnown RBP12.77□□□□□ -0.37
SMG6-213ENST00000573166 NEXNQ0ZGT2 675 aa12.77□□□□□ -0.37
SMG6-213ENST00000573166 TSR2Q969E8 191 aaKnown RBP12.77□□□□□ -0.37
SMG6-213ENST00000573166 MAP3K4Q9Y6R4 1608 aa12.76□□□□□ -0.37
SMG6-213ENST00000573166 PLEKHG3A1L390 1219 aa12.76□□□□□ -0.37
SMG6-213ENST00000573166 POLKQ9UBT6 870 aa12.76□□□□□ -0.37
SMG6-213ENST00000573166 DDX58O95786 925 aaKnown RBP12.76□□□□□ -0.37
SMG6-213ENST00000573166 C8orf37Q96NL8 207 aa12.76□□□□□ -0.37
SMG6-213ENST00000573166 EXOSC9Q06265 439 aaKnown RBP12.75□□□□□ -0.37
SMG6-213ENST00000573166 AIMP1Q12904 312 aaKnown RBP12.75□□□□□ -0.37
SMG6-213ENST00000573166 TAF7LQ5H9L4 462 aa12.75□□□□□ -0.37
SMG6-213ENST00000573166 CLTCL1P53675 1640 aa12.75□□□□□ -0.37
SMG6-213ENST00000573166 ASXL1Q8IXJ9 1541 aa12.75□□□□□ -0.37
SMG6-213ENST00000573166 CLTCQ00610 1675 aaKnown RBP12.75□□□□□ -0.37
SMG6-213ENST00000573166 GNAT3A8MTJ3 354 aa12.75□□□□□ -0.37
SMG6-213ENST00000573166 HSP90AA1P07900 732 aaKnown RBP12.75□□□□□ -0.37
SMG6-213ENST00000573166 THUMPD2Q9BTF0 503 aaKnown RBP12.75□□□□□ -0.37
SMG6-213ENST00000573166 LMTK2Q8IWU2 1503 aa12.75□□□□□ -0.37
SMG6-213ENST00000573166 AMOTQ4VCS5 1084 aa12.74□□□□□ -0.37
SMG6-213ENST00000573166 PER1O15534 1290 aaPredicted RBP12.74□□□□□ -0.37
SMG6-213ENST00000573166 RWDD1Q9H446 243 aaPredicted RBP12.74□□□□□ -0.37
SMG6-213ENST00000573166 DCTN1Q14203 1278 aa12.74□□□□□ -0.37
SMG6-213ENST00000573166 PIK3R4Q99570 1358 aa12.74□□□□□ -0.37
SMG6-213ENST00000573166 MCM10Q7L590 875 aa12.73□□□□□ -0.37
SMG6-213ENST00000573166 API5Q9BZZ5 524 aaKnown RBP12.73□□□□□ -0.37
SMG6-213ENST00000573166 COG6Q9Y2V7 657 aa12.73□□□□□ -0.37
SMG6-213ENST00000573166 EXOC5O00471 708 aa12.73□□□□□ -0.37
SMG6-213ENST00000573166 ZFYVE9O95405 1425 aa12.73□□□□□ -0.37
SMG6-213ENST00000573166 HMMRO75330 724 aa12.73□□□□□ -0.37
SMG6-213ENST00000573166 TWISTNBQ3B726 338 aaPredicted RBP12.73□□□□□ -0.37
SMG6-213ENST00000573166 SBNO2Q9Y2G9 1366 aa12.73□□□□□ -0.37
SMG6-213ENST00000573166 ZMYM4Q5VZL5 1548 aa12.73□□□□□ -0.37
SMG6-213ENST00000573166 C9orf78Q9NZ63 289 aaPredicted RBP12.73□□□□□ -0.37
SMG6-213ENST00000573166 RRP1P56182 461 aaKnown RBP12.72□□□□□ -0.37
SMG6-213ENST00000573166 WDR63Q8IWG1 891 aa12.72□□□□□ -0.37
SMG6-213ENST00000573166 SPHKAPQ2M3C7 1700 aa12.72□□□□□ -0.37
SMG6-213ENST00000573166 PTPRMP28827 1452 aa12.72□□□□□ -0.37
SMG6-213ENST00000573166 MAP3K19Q56UN5 1328 aa12.72□□□□□ -0.37
SMG6-213ENST00000573166 HDGFL1Q5TGJ6 251 aa12.72□□□□□ -0.37
SMG6-213ENST00000573166 WWC1Q8IX03 1113 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms