RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 LRRC59Q96AG4 307 aaKnown RBP11.69□□□□□ -0.54
VPS53-214ENST00000572607 PRAM1Q96QH2 718 aa11.69□□□□□ -0.54
VPS53-214ENST00000572607 ATRNO75882 1429 aa11.69□□□□□ -0.54
VPS53-214ENST00000572607 ESCO1Q5FWF5 840 aa11.68□□□□□ -0.54
VPS53-214ENST00000572607 TSPYL2Q9H2G4 693 aaPredicted RBP11.68□□□□□ -0.54
VPS53-214ENST00000572607 DLC1Q96QB1 1528 aa11.67□□□□□ -0.54
VPS53-214ENST00000572607 PLEKHG5O94827 1062 aa11.67□□□□□ -0.54
VPS53-214ENST00000572607 SAFB2Q14151 953 aaKnown RBP eCLIP11.67□□□□□ -0.54
VPS53-214ENST00000572607 MIER1Q8N108 512 aa11.67□□□□□ -0.54
VPS53-214ENST00000572607 MS4A3Q96HJ5 214 aa11.67□□□□□ -0.54
VPS53-214ENST00000572607 ORAI2Q96SN7 254 aa11.67□□□□□ -0.54
VPS53-214ENST00000572607 TRAK1Q9UPV9 953 aa11.67□□□□□ -0.54
VPS53-214ENST00000572607 NUTM2FA1L443 756 aa11.66□□□□□ -0.54
VPS53-214ENST00000572607 PELP1Q8IZL8 1130 aaKnown RBP11.66□□□□□ -0.54
VPS53-214ENST00000572607 CCDC61Q9Y6R9 512 aa11.66□□□□□ -0.54
VPS53-214ENST00000572607 ADGRB1O14514 1584 aa11.66□□□□□ -0.54
VPS53-214ENST00000572607 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.66□□□□□ -0.54
VPS53-214ENST00000572607 BRWD3Q6RI45 1802 aa11.65□□□□□ -0.54
VPS53-214ENST00000572607 NPHP3Q7Z494 1330 aa11.65□□□□□ -0.54
VPS53-214ENST00000572607 BCL9LQ86UU0 1499 aa11.65□□□□□ -0.54
VPS53-214ENST00000572607 ADAMTS2O95450 1211 aa11.65□□□□□ -0.54
VPS53-214ENST00000572607 NEUROD1Q13562 356 aa11.65□□□□□ -0.54
VPS53-214ENST00000572607 FNBP4Q8N3X1 1017 aaPredicted RBP11.65□□□□□ -0.54
VPS53-214ENST00000572607 PXDNQ92626 1479 aa11.64□□□□□ -0.55
VPS53-214ENST00000572607 ASTLQ6HA08 431 aaPredicted RBP11.64□□□□□ -0.55
VPS53-214ENST00000572607 EIF3AQ14152 1382 aaKnown RBP11.64□□□□□ -0.55
VPS53-214ENST00000572607 ATAD2Q6PL18 1390 aa11.64□□□□□ -0.55
VPS53-214ENST00000572607 GLI3P10071 1580 aa11.63□□□□□ -0.55
VPS53-214ENST00000572607 SIN3AQ96ST3 1273 aa11.63□□□□□ -0.55
VPS53-214ENST00000572607 POTEB2H3BUK9 544 aa11.62□□□□□ -0.55
VPS53-214ENST00000572607 L3MBTL2Q969R5 705 aa11.62□□□□□ -0.55
VPS53-214ENST00000572607 NGLY1Q96IV0 654 aa11.62□□□□□ -0.55
VPS53-214ENST00000572607 MINK1Q8N4C8 1332 aaPredicted RBP11.61□□□□□ -0.55
VPS53-214ENST00000572607 ATMINO43313 823 aaPredicted RBP11.61□□□□□ -0.55
VPS53-214ENST00000572607 FOXO3O43524 673 aa11.61□□□□□ -0.55
VPS53-214ENST00000572607 USP21Q9UK80 565 aa11.61□□□□□ -0.55
VPS53-214ENST00000572607 ANKARQ7Z5J8 1434 aa11.6□□□□□ -0.55
VPS53-214ENST00000572607 FMN2Q9NZ56 1722 aa11.6□□□□□ -0.55
VPS53-214ENST00000572607 KIF12Q96FN5 646 aa11.6□□□□□ -0.55
VPS53-214ENST00000572607 HIRIP3Q9BW71 556 aaPredicted RBP11.6□□□□□ -0.55
VPS53-214ENST00000572607 TRPC5Q9UL62 973 aaPredicted RBP11.6□□□□□ -0.55
VPS53-214ENST00000572607 PHF8Q9UPP1 1060 aa11.6□□□□□ -0.55
VPS53-214ENST00000572607 KIAA1210Q9ULL0 1709 aa11.6□□□□□ -0.55
VPS53-214ENST00000572607 KIF1AQ12756 1690 aa11.59□□□□□ -0.55
VPS53-214ENST00000572607 ADGRB2O60241 1585 aa11.59□□□□□ -0.55
VPS53-214ENST00000572607 TONSLQ96HA7 1378 aa11.59□□□□□ -0.55
VPS53-214ENST00000572607 WASLO00401 505 aaPredicted RBP11.59□□□□□ -0.55
VPS53-214ENST00000572607 XPCQ01831 940 aaPredicted RBP11.59□□□□□ -0.55
VPS53-214ENST00000572607 PSME1Q06323 249 aa11.59□□□□□ -0.55
VPS53-214ENST00000572607 OTUD5Q96G74 571 aa11.59□□□□□ -0.55
VPS53-214ENST00000572607 NBPF1Q3BBV0 1214 aa11.58□□□□□ -0.56
VPS53-214ENST00000572607 SLIT2O94813 1529 aa11.58□□□□□ -0.56
VPS53-214ENST00000572607 ABCA3Q99758 1704 aa11.57□□□□□ -0.56
VPS53-214ENST00000572607 LRP5O75197 1615 aa11.57□□□□□ -0.56
VPS53-214ENST00000572607 RGPD8O14715 1765 aaPredicted RBP11.57□□□□□ -0.56
VPS53-214ENST00000572607 KRT28Q7Z3Y7 464 aa11.57□□□□□ -0.56
VPS53-214ENST00000572607 SLC39A7Q92504 469 aa11.57□□□□□ -0.56
VPS53-214ENST00000572607 ROCK2O75116 1388 aaKnown RBP11.56□□□□□ -0.56
VPS53-214ENST00000572607 TULP4Q9NRJ4 1543 aa11.56□□□□□ -0.56
VPS53-214ENST00000572607 C7P10643 843 aa11.56□□□□□ -0.56
VPS53-214ENST00000572607 RASEFQ8IZ41 740 aa11.56□□□□□ -0.56
VPS53-214ENST00000572607 PMFBP1Q8TBY8 1022 aa11.56□□□□□ -0.56
VPS53-214ENST00000572607 USP32Q8NFA0 1604 aa11.56□□□□□ -0.56
VPS53-214ENST00000572607 RALGAPBQ86X10 1494 aa11.56□□□□□ -0.56
VPS53-214ENST00000572607 CENPJQ9HC77 1338 aaPredicted RBP11.56□□□□□ -0.56
VPS53-214ENST00000572607 PLCH1Q4KWH8 1693 aa11.55□□□□□ -0.56
VPS53-214ENST00000572607 GPRASP1Q5JY77 1395 aa11.55□□□□□ -0.56
VPS53-214ENST00000572607 ARHGEF28Q8N1W1 1705 aaKnown RBP11.55□□□□□ -0.56
VPS53-214ENST00000572607 HAP1P54257 671 aaPredicted RBP11.55□□□□□ -0.56
VPS53-214ENST00000572607 PLCD3Q8N3E9 789 aa11.55□□□□□ -0.56
VPS53-214ENST00000572607 LMOD2Q6P5Q4 547 aa11.54□□□□□ -0.56
VPS53-214ENST00000572607 NGDNQ8NEJ9 315 aaKnown RBP11.54□□□□□ -0.56
VPS53-214ENST00000572607 GJD4Q96KN9 370 aaPredicted RBP11.54□□□□□ -0.56
VPS53-214ENST00000572607 CDK19Q9BWU1 502 aa11.54□□□□□ -0.56
VPS53-214ENST00000572607 METRNQ9UJH8 293 aa11.54□□□□□ -0.56
VPS53-214ENST00000572607 SPATA31A3Q5VYP0 1347 aa11.54□□□□□ -0.56
VPS53-214ENST00000572607 TNS3Q68CZ2 1445 aa11.53□□□□□ -0.56
VPS53-214ENST00000572607 NWD2Q9ULI1 1742 aa11.53□□□□□ -0.56
VPS53-214ENST00000572607 SRPK2P78362 688 aaKnown RBP11.53□□□□□ -0.56
VPS53-214ENST00000572607 NUDT16Q96DE0 195 aaKnown RBP11.53□□□□□ -0.56
VPS53-214ENST00000572607 PRR36Q9H6K5 1346 aa11.53□□□□□ -0.56
VPS53-214ENST00000572607 SBNO1A3KN83 1393 aa11.53□□□□□ -0.56
VPS53-214ENST00000572607 ARHGEF10O15013 1369 aa11.53□□□□□ -0.56
VPS53-214ENST00000572607 BLMP54132 1417 aaPredicted RBP11.52□□□□□ -0.56
VPS53-214ENST00000572607 NRAPQ86VF7 1730 aa11.52□□□□□ -0.56
VPS53-214ENST00000572607 CCDC125Q86Z20 511 aa11.52□□□□□ -0.57
VPS53-214ENST00000572607 MAP3K13O43283 966 aa11.51□□□□□ -0.57
VPS53-214ENST00000572607 ATN1P54259 1190 aaPredicted RBP11.51□□□□□ -0.57
VPS53-214ENST00000572607 FKBP8Q14318 412 aa11.51□□□□□ -0.57
VPS53-214ENST00000572607 DEFB132Q7Z7B7 95 aa11.51□□□□□ -0.57
VPS53-214ENST00000572607 PCGF6Q9BYE7 350 aa11.51□□□□□ -0.57
VPS53-214ENST00000572607 ZBTB47Q9UFB7 747 aaPredicted RBP11.51□□□□□ -0.57
VPS53-214ENST00000572607 ATP7BP35670 1465 aa11.51□□□□□ -0.57
VPS53-214ENST00000572607 TRPM1Q7Z4N2 1603 aa11.5□□□□□ -0.57
VPS53-214ENST00000572607 CARD11Q9BXL7 1154 aa11.5□□□□□ -0.57
VPS53-214ENST00000572607 NBPF8Q3BBV2 869 aa11.49□□□□□ -0.57
VPS53-214ENST00000572607 UNC5CLQ8IV45 518 aa11.49□□□□□ -0.57
VPS53-214ENST00000572607 EVC2Q86UK5 1308 aa11.49□□□□□ -0.57
VPS53-214ENST00000572607 CABP2Q9NPB3 220 aa11.48□□□□□ -0.57
VPS53-214ENST00000572607 ITSN1Q15811 1721 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms