RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 NOB1Q9ULX3 412 aaKnown RBP13.54□□□□□ -0.24
CCDC40-207ENST00000572253 RIPK4P57078 832 aa13.53□□□□□ -0.24
CCDC40-207ENST00000572253 SMC5Q8IY18 1101 aa13.53□□□□□ -0.24
CCDC40-207ENST00000572253 GGNBP2Q9H3C7 697 aa13.53□□□□□ -0.24
CCDC40-207ENST00000572253 DDX11L8A8MPP1 907 aa13.53□□□□□ -0.24
CCDC40-207ENST00000572253 ADGRB2O60241 1585 aa13.53□□□□□ -0.24
CCDC40-207ENST00000572253 ARXQ96QS3 562 aa13.52□□□□□ -0.24
CCDC40-207ENST00000572253 ATAD2Q6PL18 1390 aa13.52□□□□□ -0.24
CCDC40-207ENST00000572253 GLI2P10070 1586 aa13.52□□□□□ -0.25
CCDC40-207ENST00000572253 DIAPH1O60610 1272 aaKnown RBP13.52□□□□□ -0.25
CCDC40-207ENST00000572253 STK26Q9P289 416 aa13.52□□□□□ -0.25
CCDC40-207ENST00000572253 CFAP65Q6ZU64 1925 aaKnown RBP13.52□□□□□ -0.25
CCDC40-207ENST00000572253 HDGFL2Q7Z4V5 671 aaPredicted RBP13.52□□□□□ -0.25
CCDC40-207ENST00000572253 TMEM57Q8N5G2 664 aa13.51□□□□□ -0.25
CCDC40-207ENST00000572253 TULP4Q9NRJ4 1543 aa13.51□□□□□ -0.25
CCDC40-207ENST00000572253 PLEKHF1Q96S99 279 aa13.51□□□□□ -0.25
CCDC40-207ENST00000572253 GZF1Q9H116 711 aaPredicted RBP13.51□□□□□ -0.25
CCDC40-207ENST00000572253 TRIM35Q9UPQ4 493 aa13.51□□□□□ -0.25
CCDC40-207ENST00000572253 A0A1W2PP64 1363 aa13.51□□□□□ -0.25
CCDC40-207ENST00000572253 TRAK2O60296 914 aa13.5□□□□□ -0.25
CCDC40-207ENST00000572253 ALDH1L2Q3SY69 923 aa13.5□□□□□ -0.25
CCDC40-207ENST00000572253 POGZQ7Z3K3 1410 aa13.5□□□□□ -0.25
CCDC40-207ENST00000572253 MLH3Q9UHC1 1453 aa13.49□□□□□ -0.25
CCDC40-207ENST00000572253 ZNF428Q96B54 188 aa13.49□□□□□ -0.25
CCDC40-207ENST00000572253 ZBTB40Q9NUA8 1239 aa13.49□□□□□ -0.25
CCDC40-207ENST00000572253 HSP90AB1P08238 724 aaKnown RBP13.49□□□□□ -0.25
CCDC40-207ENST00000572253 ABCC3O15438 1527 aa13.48□□□□□ -0.25
CCDC40-207ENST00000572253 HSP90AA1P07900 732 aaKnown RBP13.48□□□□□ -0.25
CCDC40-207ENST00000572253 CALD1Q05682 793 aaKnown RBP13.48□□□□□ -0.25
CCDC40-207ENST00000572253 CD109Q6YHK3 1445 aa13.48□□□□□ -0.25
CCDC40-207ENST00000572253 MRE11P49959 708 aa13.48□□□□□ -0.25
CCDC40-207ENST00000572253 NUCB1Q02818 461 aa13.48□□□□□ -0.25
CCDC40-207ENST00000572253 LNPKQ9C0E8 428 aa13.48□□□□□ -0.25
CCDC40-207ENST00000572253 CFAP74Q9C0B2 1584 aa13.48□□□□□ -0.25
CCDC40-207ENST00000572253 HECW2Q9P2P5 1572 aa13.48□□□□□ -0.25
CCDC40-207ENST00000572253 PTMSP20962 102 aa13.47□□□□□ -0.25
CCDC40-207ENST00000572253 GBP4Q96PP9 640 aa13.47□□□□□ -0.25
CCDC40-207ENST00000572253 ISY1Q9ULR0 285 aaKnown RBP13.47□□□□□ -0.25
CCDC40-207ENST00000572253 MINK1Q8N4C8 1332 aaPredicted RBP13.47□□□□□ -0.25
CCDC40-207ENST00000572253 CHD1LQ86WJ1 897 aa13.47□□□□□ -0.25
CCDC40-207ENST00000572253 FYB1O15117 783 aa13.47□□□□□ -0.25
CCDC40-207ENST00000572253 CIZ1Q9ULV3 898 aaPredicted RBP13.47□□□□□ -0.25
CCDC40-207ENST00000572253 FCHSD2O94868 740 aa13.47□□□□□ -0.25
CCDC40-207ENST00000572253 XRCC6P12956 609 aaKnown RBP eCLIP13.47□□□□□ -0.25
CCDC40-207ENST00000572253 SNX21Q969T3 373 aa13.47□□□□□ -0.25
CCDC40-207ENST00000572253 SLC52A1Q9NWF4 448 aa13.47□□□□□ -0.25
CCDC40-207ENST00000572253 ARHGEF28Q8N1W1 1705 aaKnown RBP13.46□□□□□ -0.25
CCDC40-207ENST00000572253 FSD2A1L4K1 749 aa13.46□□□□□ -0.25
CCDC40-207ENST00000572253 RBM25P49756 843 aaKnown RBP13.46□□□□□ -0.25
CCDC40-207ENST00000572253 GCC1Q96CN9 775 aa13.46□□□□□ -0.26
CCDC40-207ENST00000572253 MED14O60244 1454 aa13.45□□□□□ -0.26
CCDC40-207ENST00000572253 BMP2KLQ5H9B9 411 aa13.45□□□□□ -0.26
CCDC40-207ENST00000572253 ZFYVE9O95405 1425 aa13.45□□□□□ -0.26
CCDC40-207ENST00000572253 CAMSAP1Q5T5Y3 1602 aa13.44□□□□□ -0.26
CCDC40-207ENST00000572253 NEXMIFQ5QGS0 1516 aa13.44□□□□□ -0.26
CCDC40-207ENST00000572253 IDI1Q13907 227 aa13.44□□□□□ -0.26
CCDC40-207ENST00000572253 ANKRD45Q5TZF3 282 aa13.44□□□□□ -0.26
CCDC40-207ENST00000572253 PRAM1Q96QH2 718 aa13.44□□□□□ -0.26
CCDC40-207ENST00000572253 COL3A1P02461 1466 aaPredicted RBP13.44□□□□□ -0.26
CCDC40-207ENST00000572253 FRMPD1Q5SYB0 1578 aa13.43□□□□□ -0.26
CCDC40-207ENST00000572253 SKOR2Q2VWA4 1001 aaPredicted RBP13.43□□□□□ -0.26
CCDC40-207ENST00000572253 SENP3Q9H4L4 574 aaPredicted RBP13.43□□□□□ -0.26
CCDC40-207ENST00000572253 RRAGDQ9NQL2 400 aaPredicted RBP13.43□□□□□ -0.26
CCDC40-207ENST00000572253 PRKAR2BP31323 418 aa13.43□□□□□ -0.26
CCDC40-207ENST00000572253 CFAP44Q96MT7 982 aa13.42□□□□□ -0.26
CCDC40-207ENST00000572253 GOLGA6L22H0YM25 854 aa13.42□□□□□ -0.26
CCDC40-207ENST00000572253 BRPF1P55201 1214 aaPredicted RBP13.42□□□□□ -0.26
CCDC40-207ENST00000572253 GNAI1P63096 354 aa13.42□□□□□ -0.26
CCDC40-207ENST00000572253 ARHGAP45Q92619 1136 aa13.42□□□□□ -0.26
CCDC40-207ENST00000572253 GRPEL1Q9HAV7 217 aa13.41□□□□□ -0.26
CCDC40-207ENST00000572253 ARHGAP31Q2M1Z3 1444 aa13.41□□□□□ -0.26
CCDC40-207ENST00000572253 NFE2L2Q16236 605 aa13.4□□□□□ -0.26
CCDC40-207ENST00000572253 CDK19Q9BWU1 502 aa13.4□□□□□ -0.26
CCDC40-207ENST00000572253 STAG3Q9UJ98 1225 aa13.4□□□□□ -0.26
CCDC40-207ENST00000572253 PNPLA6Q8IY17 1366 aa13.4□□□□□ -0.26
CCDC40-207ENST00000572253 LMOD3Q0VAK6 560 aa13.4□□□□□ -0.26
CCDC40-207ENST00000572253 TRIM44Q96DX7 344 aaPredicted RBP13.4□□□□□ -0.26
CCDC40-207ENST00000572253 NCOA3Q9Y6Q9 1424 aa13.4□□□□□ -0.26
CCDC40-207ENST00000572253 TNPO1Q92973 898 aaKnown RBP13.39□□□□□ -0.27
CCDC40-207ENST00000572253 ZNF692Q9BU19 519 aaPredicted RBP13.39□□□□□ -0.27
CCDC40-207ENST00000572253 PANK2Q9BZ23 570 aa13.39□□□□□ -0.27
CCDC40-207ENST00000572253 PIK3C2BO00750 1634 aa13.39□□□□□ -0.27
CCDC40-207ENST00000572253 CABP1Q9NZU7 370 aa13.39□□□□□ -0.27
CCDC40-207ENST00000572253 YTHDC2Q9H6S0 1430 aaKnown RBP13.39□□□□□ -0.27
CCDC40-207ENST00000572253 NAP1L5Q96NT1 182 aaPredicted RBP13.39□□□□□ -0.27
CCDC40-207ENST00000572253 API5Q9BZZ5 524 aaKnown RBP13.39□□□□□ -0.27
CCDC40-207ENST00000572253 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.39□□□□□ -0.27
CCDC40-207ENST00000572253 K7ELQ4 463 aaPredicted RBP13.38□□□□□ -0.27
CCDC40-207ENST00000572253 ZBTB7BO15156 539 aaPredicted RBP13.38□□□□□ -0.27
CCDC40-207ENST00000572253 IFT57Q9NWB7 429 aa13.38□□□□□ -0.27
CCDC40-207ENST00000572253 CDC45O75419 566 aa13.38□□□□□ -0.27
CCDC40-207ENST00000572253 CLCN1P35523 988 aa13.38□□□□□ -0.27
CCDC40-207ENST00000572253 MRPL50Q8N5N7 158 aaKnown RBP13.38□□□□□ -0.27
CCDC40-207ENST00000572253 RAPGEF3O95398 923 aa13.38□□□□□ -0.27
CCDC40-207ENST00000572253 ANKRD26Q9UPS8 1709 aa13.37□□□□□ -0.27
CCDC40-207ENST00000572253 RAB3GAP1Q15042 981 aa13.37□□□□□ -0.27
CCDC40-207ENST00000572253 PPIP5K1Q6PFW1 1433 aa13.37□□□□□ -0.27
CCDC40-207ENST00000572253 VAMP4O75379 141 aa13.37□□□□□ -0.27
CCDC40-207ENST00000572253 C1orf115Q9H7X2 142 aa13.37□□□□□ -0.27
CCDC40-207ENST00000572253 PTPRMP28827 1452 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms