RNA–Protein interactions for RNA: ENST00000569117.1

CDH3-210, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 576 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-210ENST00000569117 CD163L1Q9NR16 1453 aa14.47□□□□□ -0.09
CDH3-210ENST00000569117 ATF3P18847 181 aa14.47□□□□□ -0.09
CDH3-210ENST00000569117 NUDT16Q96DE0 195 aaKnown RBP14.47□□□□□ -0.09
CDH3-210ENST00000569117 CCDC61Q9Y6R9 512 aa14.46□□□□□ -0.09
CDH3-210ENST00000569117 POLR3GLQ9BT43 218 aa14.45□□□□□ -0.1
CDH3-210ENST00000569117 ANKRD36BQ8N2N9 1353 aa14.45□□□□□ -0.1
CDH3-210ENST00000569117 NHSL1Q5SYE7 1610 aa14.44□□□□□ -0.1
CDH3-210ENST00000569117 CPSF1Q10570 1443 aaKnown RBP14.44□□□□□ -0.1
CDH3-210ENST00000569117 ROBO1Q9Y6N7 1651 aa14.44□□□□□ -0.1
CDH3-210ENST00000569117 POLR3AO14802 1390 aaPredicted RBP14.44□□□□□ -0.1
CDH3-210ENST00000569117 NUTM2FA1L443 756 aa14.43□□□□□ -0.1
CDH3-210ENST00000569117 RGL2O15211 777 aa14.43□□□□□ -0.1
CDH3-210ENST00000569117 A0A1W2PP64 1363 aa14.43□□□□□ -0.1
CDH3-210ENST00000569117 PLEKHG3A1L390 1219 aa14.42□□□□□ -0.1
CDH3-210ENST00000569117 RNF39Q9H2S5 420 aa14.42□□□□□ -0.1
CDH3-210ENST00000569117 KIF20BQ96Q89 1820 aa14.42□□□□□ -0.1
CDH3-210ENST00000569117 TRPM3Q9HCF6 1732 aaPredicted RBP14.41□□□□□ -0.1
CDH3-210ENST00000569117 SPRYD3Q8NCJ5 442 aa14.41□□□□□ -0.1
CDH3-210ENST00000569117 CERKQ8TCT0 537 aa14.41□□□□□ -0.1
CDH3-210ENST00000569117 SLC12A5Q9H2X9 1139 aa14.41□□□□□ -0.1
CDH3-210ENST00000569117 USP6P35125 1406 aa14.41□□□□□ -0.1
CDH3-210ENST00000569117 ABCB7O75027 752 aa14.4□□□□□ -0.1
CDH3-210ENST00000569117 PLCD3Q8N3E9 789 aa14.4□□□□□ -0.1
CDH3-210ENST00000569117 TMC1Q8TDI8 760 aa14.4□□□□□ -0.1
CDH3-210ENST00000569117 CABP1Q9NZU7 370 aa14.4□□□□□ -0.1
CDH3-210ENST00000569117 PHF8Q9UPP1 1060 aa14.4□□□□□ -0.1
CDH3-210ENST00000569117 ANKRD26Q9UPS8 1709 aa14.4□□□□□ -0.1
CDH3-210ENST00000569117 AHDC1Q5TGY3 1603 aaPredicted RBP14.4□□□□□ -0.1
CDH3-210ENST00000569117 USP54Q70EL1 1684 aa14.39□□□□□ -0.11
CDH3-210ENST00000569117 TERF2IPQ9NYB0 399 aa14.39□□□□□ -0.11
CDH3-210ENST00000569117 SLAIN2Q9P270 581 aa14.39□□□□□ -0.11
CDH3-210ENST00000569117 EDC4Q6P2E9 1401 aaKnown RBP14.39□□□□□ -0.11
CDH3-210ENST00000569117 DDX10Q13206 875 aaKnown RBP14.38□□□□□ -0.11
CDH3-210ENST00000569117 ESCO1Q5FWF5 840 aa14.38□□□□□ -0.11
CDH3-210ENST00000569117 ORAI2Q96SN7 254 aa14.38□□□□□ -0.11
CDH3-210ENST00000569117 ZNF692Q9BU19 519 aaPredicted RBP14.38□□□□□ -0.11
CDH3-210ENST00000569117 SSH2Q76I76 1423 aa14.38□□□□□ -0.11
CDH3-210ENST00000569117 NSD3Q9BZ95 1437 aa14.38□□□□□ -0.11
CDH3-210ENST00000569117 ACEP12821 1306 aa14.38□□□□□ -0.11
CDH3-210ENST00000569117 PXDNQ92626 1479 aa14.38□□□□□ -0.11
CDH3-210ENST00000569117 BRD4O60885 1362 aaPredicted RBP14.37□□□□□ -0.11
CDH3-210ENST00000569117 KTN1Q86UP2 1357 aaKnown RBP14.37□□□□□ -0.11
CDH3-210ENST00000569117 PIK3C2AO00443 1686 aa14.37□□□□□ -0.11
CDH3-210ENST00000569117 ALS2Q96Q42 1657 aa14.37□□□□□ -0.11
CDH3-210ENST00000569117 BRINP3Q76B58 766 aa14.37□□□□□ -0.11
CDH3-210ENST00000569117 HDGFL2Q7Z4V5 671 aaPredicted RBP14.37□□□□□ -0.11
CDH3-210ENST00000569117 TOM1O60784 492 aa14.36□□□□□ -0.11
CDH3-210ENST00000569117 PMFBP1Q8TBY8 1022 aa14.36□□□□□ -0.11
CDH3-210ENST00000569117 PANK3Q9H999 370 aa14.36□□□□□ -0.11
CDH3-210ENST00000569117 TSHZ2Q9NRE2 1034 aa14.36□□□□□ -0.11
CDH3-210ENST00000569117 NGDNQ8NEJ9 315 aaKnown RBP14.35□□□□□ -0.11
CDH3-210ENST00000569117 NPHP3Q7Z494 1330 aa14.35□□□□□ -0.11
CDH3-210ENST00000569117 MARF1Q9Y4F3 1742 aaKnown RBP14.35□□□□□ -0.11
CDH3-210ENST00000569117 CARD14Q9BXL6 1004 aa14.34□□□□□ -0.11
CDH3-210ENST00000569117 PHLPP1O60346 1717 aa14.34□□□□□ -0.11
CDH3-210ENST00000569117 NPC1L1Q9UHC9 1359 aa14.34□□□□□ -0.11
CDH3-210ENST00000569117 COL16A1Q07092 1604 aaPredicted RBP14.33□□□□□ -0.11
CDH3-210ENST00000569117 PER1O15534 1290 aaPredicted RBP14.33□□□□□ -0.12
CDH3-210ENST00000569117 MIER1Q8N108 512 aa14.33□□□□□ -0.12
CDH3-210ENST00000569117 NSD2O96028 1365 aa14.33□□□□□ -0.12
CDH3-210ENST00000569117 UBAP1LF5GYI3 381 aa14.32□□□□□ -0.12
CDH3-210ENST00000569117 SBNO1A3KN83 1393 aa14.32□□□□□ -0.12
CDH3-210ENST00000569117 CRYBG1Q9Y4K1 1723 aa14.32□□□□□ -0.12
CDH3-210ENST00000569117 MED1Q15648 1581 aaPredicted RBP14.31□□□□□ -0.12
CDH3-210ENST00000569117 FOXO3O43524 673 aa14.31□□□□□ -0.12
CDH3-210ENST00000569117 TTC21AQ8NDW8 1320 aa14.31□□□□□ -0.12
CDH3-210ENST00000569117 OVOS2A0A0J9YW53 1432 aa14.31□□□□□ -0.12
CDH3-210ENST00000569117 TNS3Q68CZ2 1445 aa14.31□□□□□ -0.12
CDH3-210ENST00000569117 OVOS2Q6IE36 1432 aa14.31□□□□□ -0.12
CDH3-210ENST00000569117 ABCA3Q99758 1704 aa14.3□□□□□ -0.12
CDH3-210ENST00000569117 C1QBPQ07021 282 aaKnown RBP14.3□□□□□ -0.12
CDH3-210ENST00000569117 KNSTRNQ9Y448 316 aa14.3□□□□□ -0.12
CDH3-210ENST00000569117 SOS2Q07890 1332 aaPredicted RBP14.3□□□□□ -0.12
CDH3-210ENST00000569117 CGNL1Q0VF96 1302 aa14.3□□□□□ -0.12
CDH3-210ENST00000569117 TTC21BQ7Z4L5 1316 aa14.3□□□□□ -0.12
CDH3-210ENST00000569117 PSME1Q06323 249 aa14.29□□□□□ -0.12
CDH3-210ENST00000569117 PHRF1Q9P1Y6 1649 aaKnown RBP14.29□□□□□ -0.12
CDH3-210ENST00000569117 COL22A1Q8NFW1 1626 aaPredicted RBP14.28□□□□□ -0.12
CDH3-210ENST00000569117 USP31Q70CQ4 1352 aa14.27□□□□□ -0.12
CDH3-210ENST00000569117 KRT28Q7Z3Y7 464 aa14.27□□□□□ -0.13
CDH3-210ENST00000569117 DDX17Q92841 729 aaKnown RBP14.27□□□□□ -0.13
CDH3-210ENST00000569117 SHPRHQ149N8 1683 aa14.26□□□□□ -0.13
CDH3-210ENST00000569117 SLIT3O75094 1523 aa14.26□□□□□ -0.13
CDH3-210ENST00000569117 ARHGEF10O15013 1369 aa14.26□□□□□ -0.13
CDH3-210ENST00000569117 PIP4K2BP78356 416 aa14.26□□□□□ -0.13
CDH3-210ENST00000569117 XPCQ01831 940 aaPredicted RBP14.26□□□□□ -0.13
CDH3-210ENST00000569117 PARD3Q8TEW0 1356 aa14.25□□□□□ -0.13
CDH3-210ENST00000569117 SPATA31A3Q5VYP0 1347 aa14.25□□□□□ -0.13
CDH3-210ENST00000569117 DIEXFQ68CQ4 756 aaKnown RBP14.25□□□□□ -0.13
CDH3-210ENST00000569117 NME9Q86XW9 330 aa14.25□□□□□ -0.13
CDH3-210ENST00000569117 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.25□□□□□ -0.13
CDH3-210ENST00000569117 SSUH2Q9Y2M2 353 aa14.25□□□□□ -0.13
CDH3-210ENST00000569117 SPDYE2BA6NHP3 402 aa14.24□□□□□ -0.13
CDH3-210ENST00000569117 FYB1O15117 783 aa14.24□□□□□ -0.13
CDH3-210ENST00000569117 SPDYE6P0CI01 402 aa14.24□□□□□ -0.13
CDH3-210ENST00000569117 SPDYE2Q495Y8 402 aa14.24□□□□□ -0.13
CDH3-210ENST00000569117 CIZ1Q9ULV3 898 aaPredicted RBP14.24□□□□□ -0.13
CDH3-210ENST00000569117 PAK3O75914 559 aaPredicted RBP14.23□□□□□ -0.13
CDH3-210ENST00000569117 NFAT5O94916 1531 aa14.23□□□□□ -0.13
CDH3-210ENST00000569117 USP19O94966 1318 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms