RNA–Protein interactions for RNA: ENST00000566816.1

CLN3-224, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 570 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-224ENST00000566816 CARD14Q9BXL6 1004 aa15.29■□□□□ 0.04
CLN3-224ENST00000566816 PER1O15534 1290 aaPredicted RBP15.28■□□□□ 0.04
CLN3-224ENST00000566816 JCADQ9P266 1359 aa15.27■□□□□ 0.04
CLN3-224ENST00000566816 TNS3Q68CZ2 1445 aa15.26■□□□□ 0.03
CLN3-224ENST00000566816 USP31Q70CQ4 1352 aa15.26■□□□□ 0.03
CLN3-224ENST00000566816 XPCQ01831 940 aaPredicted RBP15.26■□□□□ 0.03
CLN3-224ENST00000566816 NLRP13Q86W25 1043 aa15.26■□□□□ 0.03
CLN3-224ENST00000566816 ABTB2Q8N961 1025 aa15.26■□□□□ 0.03
CLN3-224ENST00000566816 PAK3O75914 559 aaPredicted RBP15.25■□□□□ 0.03
CLN3-224ENST00000566816 KNSTRNQ9Y448 316 aa15.25■□□□□ 0.03
CLN3-224ENST00000566816 COL16A1Q07092 1604 aaPredicted RBP15.25■□□□□ 0.03
CLN3-224ENST00000566816 CGNL1Q0VF96 1302 aa15.24■□□□□ 0.03
CLN3-224ENST00000566816 SPATA31A6Q5VVP1 1343 aa15.24■□□□□ 0.03
CLN3-224ENST00000566816 FYB1O15117 783 aa15.24■□□□□ 0.03
CLN3-224ENST00000566816 NPC1L1Q9UHC9 1359 aa15.24■□□□□ 0.03
CLN3-224ENST00000566816 PNPLA6Q8IY17 1366 aa15.23■□□□□ 0.03
CLN3-224ENST00000566816 MYOM1P52179 1685 aa15.22■□□□□ 0.03
CLN3-224ENST00000566816 AKAP12Q02952 1782 aa15.22■□□□□ 0.03
CLN3-224ENST00000566816 NLRP6P59044 892 aa15.22■□□□□ 0.03
CLN3-224ENST00000566816 ILDR1Q86SU0 546 aaPredicted RBP15.22■□□□□ 0.03
CLN3-224ENST00000566816 PHLPP1O60346 1717 aa15.22■□□□□ 0.03
CLN3-224ENST00000566816 NSD2O96028 1365 aa15.22■□□□□ 0.03
CLN3-224ENST00000566816 USP19O94966 1318 aa15.21■□□□□ 0.03
CLN3-224ENST00000566816 TRPM3Q9HCF6 1732 aaPredicted RBP15.21■□□□□ 0.03
CLN3-224ENST00000566816 NSD3Q9BZ95 1437 aa15.21■□□□□ 0.03
CLN3-224ENST00000566816 AMER1Q5JTC6 1135 aaPredicted RBP15.21■□□□□ 0.03
CLN3-224ENST00000566816 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.21■□□□□ 0.03
CLN3-224ENST00000566816 MON2Q7Z3U7 1717 aa15.2■□□□□ 0.02
CLN3-224ENST00000566816 LMOD2Q6P5Q4 547 aa15.2■□□□□ 0.02
CLN3-224ENST00000566816 KCNH5Q8NCM2 988 aa15.2■□□□□ 0.02
CLN3-224ENST00000566816 DDX10Q13206 875 aaKnown RBP15.19■□□□□ 0.02
CLN3-224ENST00000566816 NME9Q86XW9 330 aa15.19■□□□□ 0.02
CLN3-224ENST00000566816 COG3Q96JB2 828 aa15.19■□□□□ 0.02
CLN3-224ENST00000566816 GCP02774 474 aa15.18■□□□□ 0.02
CLN3-224ENST00000566816 ALS2Q96Q42 1657 aa15.18■□□□□ 0.02
CLN3-224ENST00000566816 NRKQ7Z2Y5 1582 aa15.17■□□□□ 0.02
CLN3-224ENST00000566816 OVOS2A0A0J9YW53 1432 aa15.17■□□□□ 0.02
CLN3-224ENST00000566816 OVOS2Q6IE36 1432 aa15.17■□□□□ 0.02
CLN3-224ENST00000566816 MED1Q15648 1581 aaPredicted RBP15.16■□□□□ 0.02
CLN3-224ENST00000566816 COL22A1Q8NFW1 1626 aaPredicted RBP15.16■□□□□ 0.02
CLN3-224ENST00000566816 GGNBP2Q9H3C7 697 aa15.15■□□□□ 0.02
CLN3-224ENST00000566816 SHPRHQ149N8 1683 aa15.15■□□□□ 0.02
CLN3-224ENST00000566816 CPDO75976 1380 aa15.14■□□□□ 0.01
CLN3-224ENST00000566816 NUTM2GQ5VZR2 741 aa15.14■□□□□ 0.01
CLN3-224ENST00000566816 ZRANB1Q9UGI0 708 aa15.14■□□□□ 0.01
CLN3-224ENST00000566816 AATKQ6ZMQ8 1374 aa15.13■□□□□ 0.01
CLN3-224ENST00000566816 CABLES1Q8TDN4 633 aa15.13■□□□□ 0.01
CLN3-224ENST00000566816 SLIT3O75094 1523 aa15.12■□□□□ 0.01
CLN3-224ENST00000566816 HAP1P54257 671 aaPredicted RBP15.12■□□□□ 0.01
CLN3-224ENST00000566816 MORC1Q86VD1 984 aa15.12■□□□□ 0.01
CLN3-224ENST00000566816 ARHGEF25Q86VW2 580 aa15.12■□□□□ 0.01
CLN3-224ENST00000566816 PIK3C2AO00443 1686 aa15.12■□□□□ 0.01
CLN3-224ENST00000566816 USP54Q70EL1 1684 aa15.12■□□□□ 0.01
CLN3-224ENST00000566816 KIF24Q5T7B8 1368 aa15.11■□□□□ 0.01
CLN3-224ENST00000566816 RALBP1Q15311 655 aa15.09■□□□□ 0.01
CLN3-224ENST00000566816 FNBP4Q8N3X1 1017 aaPredicted RBP15.09■□□□□ 0.01
CLN3-224ENST00000566816 FAM83GA6ND36 823 aa15.08■□□□□ 0
CLN3-224ENST00000566816 NUTM2BA6NNL0 878 aaPredicted RBP15.08■□□□□ 0
CLN3-224ENST00000566816 NUTM2EB1AL46 878 aaPredicted RBP15.08■□□□□ 0
CLN3-224ENST00000566816 NUTM2AQ8IVF1 878 aaPredicted RBP15.08■□□□□ 0
CLN3-224ENST00000566816 ZC3H6P61129 1189 aaKnown RBP15.07■□□□□ 0
CLN3-224ENST00000566816 CC2D1BQ5T0F9 858 aaKnown RBP15.07■□□□□ 0
CLN3-224ENST00000566816 PRDM11Q9NQV5 511 aa15.07■□□□□ 0
CLN3-224ENST00000566816 ADAMTS2O95450 1211 aa15.06■□□□□ 0
CLN3-224ENST00000566816 IP6K1Q92551 441 aa15.06■□□□□ 0
CLN3-224ENST00000566816 POLKQ9UBT6 870 aa15.06■□□□□ 0
CLN3-224ENST00000566816 KIAA0232Q92628 1395 aa15.06■□□□□ 0
CLN3-224ENST00000566816 NFAT5O94916 1531 aa15.06■□□□□ 0
CLN3-224ENST00000566816 NGLY1Q96IV0 654 aa15.05■□□□□ -0
CLN3-224ENST00000566816 MAP3K19Q56UN5 1328 aa15.05■□□□□ -0
CLN3-224ENST00000566816 PARD3Q8TEW0 1356 aa15.05■□□□□ -0
CLN3-224ENST00000566816 CRYBG1Q9Y4K1 1723 aa15.05■□□□□ -0
CLN3-224ENST00000566816 LRP6O75581 1613 aa15.04■□□□□ -0
CLN3-224ENST00000566816 ABCC6O95255 1503 aa15.04■□□□□ -0
CLN3-224ENST00000566816 RTL1A6NKG5 1358 aa15.04■□□□□ -0
CLN3-224ENST00000566816 MEX3CQ5U5Q3 659 aaKnown RBP15.04■□□□□ -0
CLN3-224ENST00000566816 INSRP06213 1382 aa15.03■□□□□ -0
CLN3-224ENST00000566816 PRKRIP1Q9H875 184 aaPredicted RBP15.03■□□□□ -0
CLN3-224ENST00000566816 KIF20BQ96Q89 1820 aa15.03■□□□□ -0
CLN3-224ENST00000566816 MARF1Q9Y4F3 1742 aaKnown RBP15.03■□□□□ -0
CLN3-224ENST00000566816 SLIT2O94813 1529 aa15.02■□□□□ -0
CLN3-224ENST00000566816 AMPHP49418 695 aa15.02■□□□□ -0
CLN3-224ENST00000566816 C8orf37Q96NL8 207 aa15.02■□□□□ -0
CLN3-224ENST00000566816 PHRF1Q9P1Y6 1649 aaKnown RBP15.02□□□□□ -0.01
CLN3-224ENST00000566816 BLMP54132 1417 aaPredicted RBP15.01□□□□□ -0.01
CLN3-224ENST00000566816 SMG6Q86US8 1419 aaKnown RBP15.01□□□□□ -0.01
CLN3-224ENST00000566816 SOX12O15370 315 aa15.01□□□□□ -0.01
CLN3-224ENST00000566816 PLEKHG5O94827 1062 aa15.01□□□□□ -0.01
CLN3-224ENST00000566816 FBLN1P23142 703 aa15.01□□□□□ -0.01
CLN3-224ENST00000566816 HOXC9P31274 260 aa15.01□□□□□ -0.01
CLN3-224ENST00000566816 RRS1Q15050 365 aaKnown RBP15.01□□□□□ -0.01
CLN3-224ENST00000566816 ZNF772Q68DY9 489 aaPredicted RBP15.01□□□□□ -0.01
CLN3-224ENST00000566816 UNC5CLQ8IV45 518 aa15.01□□□□□ -0.01
CLN3-224ENST00000566816 FLT4P35916 1363 aa15□□□□□ -0.01
CLN3-224ENST00000566816 PPP2R1AP30153 589 aa15□□□□□ -0.01
CLN3-224ENST00000566816 TNNT2P45379 298 aaPredicted RBP15□□□□□ -0.01
CLN3-224ENST00000566816 MTHFSP49914 203 aa15□□□□□ -0.01
CLN3-224ENST00000566816 CHRNA2Q15822 529 aa15□□□□□ -0.01
CLN3-224ENST00000566816 BTG4Q9NY30 223 aa15□□□□□ -0.01
CLN3-224ENST00000566816 AXIN2Q9Y2T1 843 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms