RNA–Protein interactions for RNA: ENST00000566370.1

LINC00563-201, long intergenic non-protein coding RNA 563, humanhuman

BASIC

Gene LINC00563, Length 1,400 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00563-201ENST00000566370 PDE3AQ14432 1141 aa17.32■□□□□ 0.36
LINC00563-201ENST00000566370 WAPLQ7Z5K2 1190 aa17.32■□□□□ 0.36
LINC00563-201ENST00000566370 COL3A1P02461 1466 aaPredicted RBP17.32■□□□□ 0.36
LINC00563-201ENST00000566370 METP08581 1390 aa17.32■□□□□ 0.36
LINC00563-201ENST00000566370 FER1L4A9Z1Z3 1794 aa17.31■□□□□ 0.36
LINC00563-201ENST00000566370 NEUROD2Q15784 382 aa17.31■□□□□ 0.36
LINC00563-201ENST00000566370 ZNF692Q9BU19 519 aaPredicted RBP17.31■□□□□ 0.36
LINC00563-201ENST00000566370 MON2Q7Z3U7 1717 aa17.29■□□□□ 0.36
LINC00563-201ENST00000566370 DIP2AQ14689 1571 aa17.29■□□□□ 0.36
LINC00563-201ENST00000566370 CCDC61Q9Y6R9 512 aa17.29■□□□□ 0.36
LINC00563-201ENST00000566370 CPSF1Q10570 1443 aaKnown RBP17.28■□□□□ 0.36
LINC00563-201ENST00000566370 IL16Q14005 1332 aa17.28■□□□□ 0.36
LINC00563-201ENST00000566370 C3P01024 1663 aa17.28■□□□□ 0.36
LINC00563-201ENST00000566370 TXNDC2Q86VQ3 553 aa17.28■□□□□ 0.36
LINC00563-201ENST00000566370 NUDT16Q96DE0 195 aaKnown RBP17.28■□□□□ 0.36
LINC00563-201ENST00000566370 ANP32EQ9BTT0 268 aa17.28■□□□□ 0.36
LINC00563-201ENST00000566370 AKAP12Q02952 1782 aa17.28■□□□□ 0.36
LINC00563-201ENST00000566370 PNPLA6Q8IY17 1366 aa17.27■□□□□ 0.36
LINC00563-201ENST00000566370 RRP7AQ9Y3A4 280 aaKnown RBP17.27■□□□□ 0.35
LINC00563-201ENST00000566370 SLIT1O75093 1534 aa17.27■□□□□ 0.35
LINC00563-201ENST00000566370 FCHSD2O94868 740 aa17.26■□□□□ 0.35
LINC00563-201ENST00000566370 CALD1Q05682 793 aaKnown RBP17.26■□□□□ 0.35
LINC00563-201ENST00000566370 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.26■□□□□ 0.35
LINC00563-201ENST00000566370 COG3Q96JB2 828 aa17.26■□□□□ 0.35
LINC00563-201ENST00000566370 SPINK5Q9NQ38 1064 aaPredicted RBP17.26■□□□□ 0.35
LINC00563-201ENST00000566370 AATKQ6ZMQ8 1374 aa17.25■□□□□ 0.35
LINC00563-201ENST00000566370 ADAMTS13Q76LX8 1427 aa17.24■□□□□ 0.35
LINC00563-201ENST00000566370 C20orf194Q5TEA3 1177 aa17.24■□□□□ 0.35
LINC00563-201ENST00000566370 THEMISQ8N1K5 641 aaPredicted RBP17.24■□□□□ 0.35
LINC00563-201ENST00000566370 CDK12Q9NYV4 1490 aaPredicted RBP17.24■□□□□ 0.35
LINC00563-201ENST00000566370 ADRA2BP18089 450 aa17.23■□□□□ 0.35
LINC00563-201ENST00000566370 TMPOP42166 694 aaKnown RBP17.23■□□□□ 0.35
LINC00563-201ENST00000566370 ARHGAP23Q9P227 1491 aa17.22■□□□□ 0.35
LINC00563-201ENST00000566370 BCAR3O75815 825 aa17.22■□□□□ 0.35
LINC00563-201ENST00000566370 MAP2P11137 1827 aaKnown RBP17.22■□□□□ 0.35
LINC00563-201ENST00000566370 RARSP54136 660 aaKnown RBP17.21■□□□□ 0.35
LINC00563-201ENST00000566370 PLEKHF1Q96S99 279 aa17.21■□□□□ 0.35
LINC00563-201ENST00000566370 DMRT2Q9Y5R5 561 aa17.21■□□□□ 0.34
LINC00563-201ENST00000566370 TOPAZ1Q8N9V7 1692 aa17.2■□□□□ 0.34
LINC00563-201ENST00000566370 KDM2BQ8NHM5 1336 aa17.2■□□□□ 0.34
LINC00563-201ENST00000566370 PPM1GO15355 546 aaPredicted RBP17.2■□□□□ 0.34
LINC00563-201ENST00000566370 LMOD3Q0VAK6 560 aa17.2■□□□□ 0.34
LINC00563-201ENST00000566370 FRAT1Q92837 279 aaPredicted RBP17.2■□□□□ 0.34
LINC00563-201ENST00000566370 TBX22Q9Y458 520 aa17.2■□□□□ 0.34
LINC00563-201ENST00000566370 PTCH1Q13635 1447 aa17.2■□□□□ 0.34
LINC00563-201ENST00000566370 ROBO2Q9HCK4 1378 aa17.19■□□□□ 0.34
LINC00563-201ENST00000566370 RIPK4P57078 832 aa17.19■□□□□ 0.34
LINC00563-201ENST00000566370 PMFBP1Q8TBY8 1022 aa17.19■□□□□ 0.34
LINC00563-201ENST00000566370 POLKQ9UBT6 870 aa17.19■□□□□ 0.34
LINC00563-201ENST00000566370 LRRC7Q96NW7 1537 aa17.18■□□□□ 0.34
LINC00563-201ENST00000566370 PDE4AP27815 886 aa17.18■□□□□ 0.34
LINC00563-201ENST00000566370 CLUAP1Q96AJ1 413 aa17.17■□□□□ 0.34
LINC00563-201ENST00000566370 ZNF428Q96B54 188 aa17.17■□□□□ 0.34
LINC00563-201ENST00000566370 TRHP20396 242 aaPredicted RBP17.16■□□□□ 0.34
LINC00563-201ENST00000566370 ZKSCAN2Q63HK3 967 aa17.16■□□□□ 0.34
LINC00563-201ENST00000566370 RIMS1Q86UR5 1692 aaKnown RBP17.16■□□□□ 0.34
LINC00563-201ENST00000566370 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.15■□□□□ 0.34
LINC00563-201ENST00000566370 PLEKHG3A1L390 1219 aa17.15■□□□□ 0.34
LINC00563-201ENST00000566370 LTKP29376 864 aa17.15■□□□□ 0.34
LINC00563-201ENST00000566370 NME9Q86XW9 330 aa17.15■□□□□ 0.34
LINC00563-201ENST00000566370 FTSJ3Q8IY81 847 aaKnown RBP17.15■□□□□ 0.34
LINC00563-201ENST00000566370 BACH2Q9BYV9 841 aa17.15■□□□□ 0.34
LINC00563-201ENST00000566370 NRKQ7Z2Y5 1582 aa17.15■□□□□ 0.34
LINC00563-201ENST00000566370 PIK3R4Q99570 1358 aa17.15■□□□□ 0.34
LINC00563-201ENST00000566370 IPO8O15397 1037 aaKnown RBP17.14■□□□□ 0.33
LINC00563-201ENST00000566370 PRKAR2BP31323 418 aa17.14■□□□□ 0.33
LINC00563-201ENST00000566370 KIF16BQ96L93 1317 aa17.14■□□□□ 0.33
LINC00563-201ENST00000566370 CEBPAP49715 358 aaPredicted RBP17.13■□□□□ 0.33
LINC00563-201ENST00000566370 NFE2L2Q16236 605 aa17.13■□□□□ 0.33
LINC00563-201ENST00000566370 IPO9Q96P70 1041 aaKnown RBP17.13■□□□□ 0.33
LINC00563-201ENST00000566370 RSPH6AQ9H0K4 717 aa17.13■□□□□ 0.33
LINC00563-201ENST00000566370 TTC21AQ8NDW8 1320 aa17.13■□□□□ 0.33
LINC00563-201ENST00000566370 CHMP4BQ9H444 224 aaKnown RBP17.13■□□□□ 0.33
LINC00563-201ENST00000566370 SMC4Q9NTJ3 1288 aa17.13■□□□□ 0.33
LINC00563-201ENST00000566370 TRIM35Q9UPQ4 493 aa17.13■□□□□ 0.33
LINC00563-201ENST00000566370 AMOTL2Q9Y2J4 779 aa17.13■□□□□ 0.33
LINC00563-201ENST00000566370 NOP58Q9Y2X3 529 aaKnown RBP17.13■□□□□ 0.33
LINC00563-201ENST00000566370 DDRGK1Q96HY6 314 aa17.12■□□□□ 0.33
LINC00563-201ENST00000566370 COG6Q9Y2V7 657 aa17.12■□□□□ 0.33
LINC00563-201ENST00000566370 TTC21BQ7Z4L5 1316 aa17.12■□□□□ 0.33
LINC00563-201ENST00000566370 USP6P35125 1406 aa17.12■□□□□ 0.33
LINC00563-201ENST00000566370 CEP170BQ9Y4F5 1589 aaPredicted RBP17.11■□□□□ 0.33
LINC00563-201ENST00000566370 ANKARQ7Z5J8 1434 aa17.11■□□□□ 0.33
LINC00563-201ENST00000566370 ACEP12821 1306 aa17.11■□□□□ 0.33
LINC00563-201ENST00000566370 PRR36Q9H6K5 1346 aa17.11■□□□□ 0.33
LINC00563-201ENST00000566370 HAP1P54257 671 aaPredicted RBP17.11■□□□□ 0.33
LINC00563-201ENST00000566370 GNAI1P63096 354 aa17.11■□□□□ 0.33
LINC00563-201ENST00000566370 EXOSC9Q06265 439 aaKnown RBP17.11■□□□□ 0.33
LINC00563-201ENST00000566370 ALDH1L2Q3SY69 923 aa17.11■□□□□ 0.33
LINC00563-201ENST00000566370 SLC26A8Q96RN1 970 aa17.11■□□□□ 0.33
LINC00563-201ENST00000566370 ZBTB47Q9UFB7 747 aaPredicted RBP17.11■□□□□ 0.33
LINC00563-201ENST00000566370 EMILIN1Q9Y6C2 1016 aa17.11■□□□□ 0.33
LINC00563-201ENST00000566370 IL13P35225 146 aa17.1■□□□□ 0.33
LINC00563-201ENST00000566370 DZIP1LQ8IYY4 767 aaKnown RBP17.1■□□□□ 0.33
LINC00563-201ENST00000566370 PANK1Q8TE04 598 aa17.1■□□□□ 0.33
LINC00563-201ENST00000566370 RWDD1Q9H446 243 aaPredicted RBP17.1■□□□□ 0.33
LINC00563-201ENST00000566370 XRN1Q8IZH2 1706 aaKnown RBP17.1■□□□□ 0.33
LINC00563-201ENST00000566370 MSH5O43196 834 aa17.09■□□□□ 0.33
LINC00563-201ENST00000566370 FAM161AQ3B820 660 aa17.09■□□□□ 0.33
LINC00563-201ENST00000566370 NALCNQ8IZF0 1738 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms