RNA–Protein interactions for RNA: ENST00000566082.1

USB1-212, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 2

Gene USB1, Length 3,888 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-212ENST00000566082 RAPGEF6Q8TEU7 1601 aa12.84□□□□□ -0.35
USB1-212ENST00000566082 EIF4G3O43432 1585 aaKnown RBP12.84□□□□□ -0.35
USB1-212ENST00000566082 UQCRHLA0A096LP55 91 aa12.83□□□□□ -0.36
USB1-212ENST00000566082 GOLGA6L6A8MZA4 724 aa12.83□□□□□ -0.36
USB1-212ENST00000566082 UQCRHP07919 91 aa12.83□□□□□ -0.36
USB1-212ENST00000566082 CDK11BP21127 795 aaKnown RBP12.83□□□□□ -0.36
USB1-212ENST00000566082 XPCQ01831 940 aaPredicted RBP12.83□□□□□ -0.36
USB1-212ENST00000566082 FAM135AQ9P2D6 1515 aa12.83□□□□□ -0.36
USB1-212ENST00000566082 SYCE3A1L190 88 aa12.83□□□□□ -0.36
USB1-212ENST00000566082 MBD3O95983 291 aa12.83□□□□□ -0.36
USB1-212ENST00000566082 TBC1D9Q6ZT07 1266 aa12.83□□□□□ -0.36
USB1-212ENST00000566082 PRAM1Q96QH2 718 aa12.82□□□□□ -0.36
USB1-212ENST00000566082 MAP7D2Q96T17 732 aa12.82□□□□□ -0.36
USB1-212ENST00000566082 FKBP5Q13451 457 aaPredicted RBP12.82□□□□□ -0.36
USB1-212ENST00000566082 BCL11BQ9C0K0 894 aaPredicted RBP12.82□□□□□ -0.36
USB1-212ENST00000566082 LMOD2Q6P5Q4 547 aa12.81□□□□□ -0.36
USB1-212ENST00000566082 LTV1Q96GA3 475 aaPredicted RBP12.81□□□□□ -0.36
USB1-212ENST00000566082 BAG4O95429 457 aaKnown RBP12.81□□□□□ -0.36
USB1-212ENST00000566082 CABP1Q9NZU7 370 aa12.81□□□□□ -0.36
USB1-212ENST00000566082 VPS37CA5D8V6 355 aaPredicted RBP12.81□□□□□ -0.36
USB1-212ENST00000566082 KDM5CP41229 1560 aa12.8□□□□□ -0.36
USB1-212ENST00000566082 HDAC1Q13547 482 aaPredicted RBP12.8□□□□□ -0.36
USB1-212ENST00000566082 CCDC27Q2M243 656 aa12.8□□□□□ -0.36
USB1-212ENST00000566082 BMP2KLQ5H9B9 411 aa12.8□□□□□ -0.36
USB1-212ENST00000566082 ATP6V1DQ9Y5K8 247 aa12.8□□□□□ -0.36
USB1-212ENST00000566082 TSPY26PQ9H489 355 aa12.8□□□□□ -0.36
USB1-212ENST00000566082 CWC22Q9HCG8 908 aaKnown RBP12.8□□□□□ -0.36
USB1-212ENST00000566082 A2MP01023 1474 aa12.8□□□□□ -0.36
USB1-212ENST00000566082 PIK3C2GO75747 1445 aa12.8□□□□□ -0.36
USB1-212ENST00000566082 ATP10BO94823 1461 aa12.79□□□□□ -0.36
USB1-212ENST00000566082 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.79□□□□□ -0.36
USB1-212ENST00000566082 NRDCO43847 1150 aa12.79□□□□□ -0.36
USB1-212ENST00000566082 SMARCA5O60264 1052 aaPredicted RBP12.79□□□□□ -0.36
USB1-212ENST00000566082 AMPHP49418 695 aa12.79□□□□□ -0.36
USB1-212ENST00000566082 ERC2O15083 957 aa12.79□□□□□ -0.36
USB1-212ENST00000566082 ZNF592Q92610 1267 aa12.78□□□□□ -0.36
USB1-212ENST00000566082 SMC3Q9UQE7 1217 aa12.78□□□□□ -0.36
USB1-212ENST00000566082 FIBPO43427 364 aa12.78□□□□□ -0.36
USB1-212ENST00000566082 RBM27Q9P2N5 1060 aaKnown RBP12.78□□□□□ -0.36
USB1-212ENST00000566082 BCORL1Q5H9F3 1711 aa12.78□□□□□ -0.36
USB1-212ENST00000566082 NUCB1Q02818 461 aa12.78□□□□□ -0.36
USB1-212ENST00000566082 ITSN2Q9NZM3 1697 aa12.78□□□□□ -0.36
USB1-212ENST00000566082 DCTN1Q14203 1278 aa12.77□□□□□ -0.36
USB1-212ENST00000566082 DIAPH3Q9NSV4 1193 aa12.77□□□□□ -0.36
USB1-212ENST00000566082 TSPYL4Q9UJ04 414 aa12.77□□□□□ -0.36
USB1-212ENST00000566082 KLHL40Q2TBA0 621 aa12.77□□□□□ -0.37
USB1-212ENST00000566082 GAS2L2Q8NHY3 880 aa12.77□□□□□ -0.37
USB1-212ENST00000566082 PDCL3Q9H2J4 239 aa12.77□□□□□ -0.37
USB1-212ENST00000566082 FCHSD2O94868 740 aa12.76□□□□□ -0.37
USB1-212ENST00000566082 SLC4A2P04920 1241 aa12.76□□□□□ -0.37
USB1-212ENST00000566082 FBLN1P23142 703 aa12.76□□□□□ -0.37
USB1-212ENST00000566082 MTERF4Q7Z6M4 381 aaKnown RBP12.76□□□□□ -0.37
USB1-212ENST00000566082 UPF3BQ9BZI7 483 aaKnown RBP12.76□□□□□ -0.37
USB1-212ENST00000566082 NUP160Q12769 1436 aa12.76□□□□□ -0.37
USB1-212ENST00000566082 ADGRL2O95490 1459 aa12.76□□□□□ -0.37
USB1-212ENST00000566082 HSP90B1P14625 803 aaKnown RBP12.76□□□□□ -0.37
USB1-212ENST00000566082 POLR3AO14802 1390 aaPredicted RBP12.76□□□□□ -0.37
USB1-212ENST00000566082 EIF2S2P20042 333 aaKnown RBP12.75□□□□□ -0.37
USB1-212ENST00000566082 ALDH1L2Q3SY69 923 aa12.75□□□□□ -0.37
USB1-212ENST00000566082 KIAA0556O60303 1618 aa12.75□□□□□ -0.37
USB1-212ENST00000566082 NFE2L2Q16236 605 aa12.75□□□□□ -0.37
USB1-212ENST00000566082 SMC5Q8IY18 1101 aa12.75□□□□□ -0.37
USB1-212ENST00000566082 SPC24Q8NBT2 197 aa12.75□□□□□ -0.37
USB1-212ENST00000566082 CDK19Q9BWU1 502 aa12.75□□□□□ -0.37
USB1-212ENST00000566082 ZNF521Q96K83 1311 aa12.75□□□□□ -0.37
USB1-212ENST00000566082 INSRP06213 1382 aa12.74□□□□□ -0.37
USB1-212ENST00000566082 RAB3GAP1Q15042 981 aa12.74□□□□□ -0.37
USB1-212ENST00000566082 ZNF428Q96B54 188 aa12.74□□□□□ -0.37
USB1-212ENST00000566082 EXOC6BQ9Y2D4 811 aa12.74□□□□□ -0.37
USB1-212ENST00000566082 MCM2P49736 904 aa12.74□□□□□ -0.37
USB1-212ENST00000566082 SULT6B1Q6IMI4 303 aa12.74□□□□□ -0.37
USB1-212ENST00000566082 NGDNQ8NEJ9 315 aaKnown RBP12.74□□□□□ -0.37
USB1-212ENST00000566082 SNX21Q969T3 373 aa12.74□□□□□ -0.37
USB1-212ENST00000566082 GPATCH3Q96I76 525 aa12.74□□□□□ -0.37
USB1-212ENST00000566082 GDPD2Q9HCC8 539 aa12.74□□□□□ -0.37
USB1-212ENST00000566082 PRDM10Q9NQV6 1147 aa12.74□□□□□ -0.37
USB1-212ENST00000566082 DISP1Q96F81 1524 aa12.73□□□□□ -0.37
USB1-212ENST00000566082 HDGFP51858 240 aaKnown RBP12.73□□□□□ -0.37
USB1-212ENST00000566082 RRS1Q15050 365 aaKnown RBP12.73□□□□□ -0.37
USB1-212ENST00000566082 ZSCAN23Q3MJ62 389 aa12.73□□□□□ -0.37
USB1-212ENST00000566082 ZNF771Q7L3S4 317 aaPredicted RBP12.73□□□□□ -0.37
USB1-212ENST00000566082 IFT57Q9NWB7 429 aa12.73□□□□□ -0.37
USB1-212ENST00000566082 HTATSF1O43719 755 aaKnown RBP12.73□□□□□ -0.37
USB1-212ENST00000566082 MAGI2Q86UL8 1455 aa12.73□□□□□ -0.37
USB1-212ENST00000566082 GOLGA6L19H0YKK7 550 aa12.73□□□□□ -0.37
USB1-212ENST00000566082 ZBTB40Q9NUA8 1239 aa12.73□□□□□ -0.37
USB1-212ENST00000566082 SYCP2Q9BX26 1530 aa12.73□□□□□ -0.37
USB1-212ENST00000566082 BICD2Q8TD16 824 aa12.72□□□□□ -0.37
USB1-212ENST00000566082 ABCC11Q96J66 1382 aa12.72□□□□□ -0.37
USB1-212ENST00000566082 TRMT2AQ8IZ69 625 aaKnown RBP12.72□□□□□ -0.37
USB1-212ENST00000566082 MBD5Q9P267 1494 aa12.72□□□□□ -0.37
USB1-212ENST00000566082 NOS1P29475 1434 aa12.72□□□□□ -0.37
USB1-212ENST00000566082 SURF6O75683 361 aaKnown RBP12.72□□□□□ -0.37
USB1-212ENST00000566082 MAP4K4O95819 1239 aaPredicted RBP12.72□□□□□ -0.37
USB1-212ENST00000566082 ZKSCAN1P17029 563 aaPredicted RBP12.72□□□□□ -0.37
USB1-212ENST00000566082 ANTXR1Q9H6X2 564 aa12.72□□□□□ -0.37
USB1-212ENST00000566082 USP19O94966 1318 aa12.72□□□□□ -0.37
USB1-212ENST00000566082 BECN2A8MW95 431 aa12.71□□□□□ -0.37
USB1-212ENST00000566082 HMGN5P82970 282 aaKnown RBP12.71□□□□□ -0.37
USB1-212ENST00000566082 RPAP2Q8IXW5 612 aaPredicted RBP12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms