RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 NPATQ14207 1427 aa17.56■□□□□ 0.4
VPS9D1-202ENST00000561976 RIPK4P57078 832 aa17.56■□□□□ 0.4
VPS9D1-202ENST00000561976 PUS7Q96PZ0 661 aaKnown RBP17.56■□□□□ 0.4
VPS9D1-202ENST00000561976 ADGRB2O60241 1585 aa17.56■□□□□ 0.4
VPS9D1-202ENST00000561976 LMTK2Q8IWU2 1503 aa17.56■□□□□ 0.4
VPS9D1-202ENST00000561976 DDX11L8A8MPP1 907 aa17.56■□□□□ 0.4
VPS9D1-202ENST00000561976 IPO8O15397 1037 aaKnown RBP17.56■□□□□ 0.4
VPS9D1-202ENST00000561976 SRPK2P78362 688 aaKnown RBP17.56■□□□□ 0.4
VPS9D1-202ENST00000561976 LNPKQ9C0E8 428 aa17.56■□□□□ 0.4
VPS9D1-202ENST00000561976 CD109Q6YHK3 1445 aa17.55■□□□□ 0.4
VPS9D1-202ENST00000561976 PPLO60437 1756 aa17.55■□□□□ 0.4
VPS9D1-202ENST00000561976 ZBTB40Q9NUA8 1239 aa17.55■□□□□ 0.4
VPS9D1-202ENST00000561976 KIF16BQ96L93 1317 aa17.54■□□□□ 0.4
VPS9D1-202ENST00000561976 MRE11P49959 708 aa17.54■□□□□ 0.4
VPS9D1-202ENST00000561976 STK26Q9P289 416 aa17.54■□□□□ 0.4
VPS9D1-202ENST00000561976 KIDINS220Q9ULH0 1771 aa17.53■□□□□ 0.4
VPS9D1-202ENST00000561976 VGFO15240 615 aaPredicted RBP17.53■□□□□ 0.4
VPS9D1-202ENST00000561976 TULP4Q9NRJ4 1543 aa17.53■□□□□ 0.4
VPS9D1-202ENST00000561976 HSP90AB1P08238 724 aaKnown RBP17.52■□□□□ 0.4
VPS9D1-202ENST00000561976 NUCB1Q02818 461 aa17.52■□□□□ 0.4
VPS9D1-202ENST00000561976 ABCC11Q96J66 1382 aa17.52■□□□□ 0.4
VPS9D1-202ENST00000561976 IL16Q14005 1332 aa17.52■□□□□ 0.4
VPS9D1-202ENST00000561976 A0A1W2PP64 1363 aa17.52■□□□□ 0.4
VPS9D1-202ENST00000561976 GLI2P10070 1586 aa17.52■□□□□ 0.39
VPS9D1-202ENST00000561976 PNNQ9H307 717 aaKnown RBP17.51■□□□□ 0.39
VPS9D1-202ENST00000561976 RBM25P49756 843 aaKnown RBP17.51■□□□□ 0.39
VPS9D1-202ENST00000561976 CHD1LQ86WJ1 897 aa17.51■□□□□ 0.39
VPS9D1-202ENST00000561976 NAP1L5Q96NT1 182 aaPredicted RBP17.51■□□□□ 0.39
VPS9D1-202ENST00000561976 ZNF692Q9BU19 519 aaPredicted RBP17.51■□□□□ 0.39
VPS9D1-202ENST00000561976 HSP90AA1P07900 732 aaKnown RBP17.5■□□□□ 0.39
VPS9D1-202ENST00000561976 GRPEL1Q9HAV7 217 aa17.5■□□□□ 0.39
VPS9D1-202ENST00000561976 DIAPH1O60610 1272 aaKnown RBP17.5■□□□□ 0.39
VPS9D1-202ENST00000561976 SNX21Q969T3 373 aa17.49■□□□□ 0.39
VPS9D1-202ENST00000561976 ANKRD45Q5TZF3 282 aa17.48■□□□□ 0.39
VPS9D1-202ENST00000561976 TNPO1Q92973 898 aaKnown RBP17.48■□□□□ 0.39
VPS9D1-202ENST00000561976 TERF2IPQ9NYB0 399 aa17.48■□□□□ 0.39
VPS9D1-202ENST00000561976 FYB1O15117 783 aa17.48■□□□□ 0.39
VPS9D1-202ENST00000561976 CLCN1P35523 988 aa17.47■□□□□ 0.39
VPS9D1-202ENST00000561976 GBP4Q96PP9 640 aa17.47■□□□□ 0.39
VPS9D1-202ENST00000561976 ALDH1L2Q3SY69 923 aa17.47■□□□□ 0.39
VPS9D1-202ENST00000561976 FOXD4L1Q9NU39 408 aa17.47■□□□□ 0.39
VPS9D1-202ENST00000561976 ASXL2Q76L83 1435 aa17.47■□□□□ 0.39
VPS9D1-202ENST00000561976 ARHGEF28Q8N1W1 1705 aaKnown RBP17.46■□□□□ 0.39
VPS9D1-202ENST00000561976 MINK1Q8N4C8 1332 aaPredicted RBP17.46■□□□□ 0.39
VPS9D1-202ENST00000561976 NCOA3Q9Y6Q9 1424 aa17.46■□□□□ 0.39
VPS9D1-202ENST00000561976 DDIT3P35638 169 aa17.45■□□□□ 0.38
VPS9D1-202ENST00000561976 BMP2KLQ5H9B9 411 aa17.45■□□□□ 0.38
VPS9D1-202ENST00000561976 COL3A1P02461 1466 aaPredicted RBP17.45■□□□□ 0.38
VPS9D1-202ENST00000561976 CIZ1Q9ULV3 898 aaPredicted RBP17.45■□□□□ 0.38
VPS9D1-202ENST00000561976 C1orf115Q9H7X2 142 aa17.45■□□□□ 0.38
VPS9D1-202ENST00000561976 ISY1Q9ULR0 285 aaKnown RBP17.45■□□□□ 0.38
VPS9D1-202ENST00000561976 HDGFL2Q7Z4V5 671 aaPredicted RBP17.43■□□□□ 0.38
VPS9D1-202ENST00000561976 TRIM44Q96DX7 344 aaPredicted RBP17.43■□□□□ 0.38
VPS9D1-202ENST00000561976 CAMSAP1Q5T5Y3 1602 aa17.42■□□□□ 0.38
VPS9D1-202ENST00000561976 PRKAR2BP31323 418 aa17.42■□□□□ 0.38
VPS9D1-202ENST00000561976 RAB3GAP1Q15042 981 aa17.42■□□□□ 0.38
VPS9D1-202ENST00000561976 GCC1Q96CN9 775 aa17.42■□□□□ 0.38
VPS9D1-202ENST00000561976 CHMP4BQ9H444 224 aaKnown RBP17.42■□□□□ 0.38
VPS9D1-202ENST00000561976 ATAD2Q6PL18 1390 aa17.42■□□□□ 0.38
VPS9D1-202ENST00000561976 FCHSD2O94868 740 aa17.41■□□□□ 0.38
VPS9D1-202ENST00000561976 SKOR2Q2VWA4 1001 aaPredicted RBP17.41■□□□□ 0.38
VPS9D1-202ENST00000561976 ABCC3O15438 1527 aa17.41■□□□□ 0.38
VPS9D1-202ENST00000561976 ZBTB7BO15156 539 aaPredicted RBP17.41■□□□□ 0.38
VPS9D1-202ENST00000561976 PRAM1Q96QH2 718 aa17.41■□□□□ 0.38
VPS9D1-202ENST00000561976 TBC1D9Q6ZT07 1266 aa17.4■□□□□ 0.38
VPS9D1-202ENST00000561976 KIF2CQ99661 725 aa17.4■□□□□ 0.38
VPS9D1-202ENST00000561976 ESPNB1AK53 854 aa17.4■□□□□ 0.38
VPS9D1-202ENST00000561976 K7ELQ4 463 aaPredicted RBP17.4■□□□□ 0.38
VPS9D1-202ENST00000561976 CD2BP2O95400 341 aaKnown RBP17.4■□□□□ 0.38
VPS9D1-202ENST00000561976 NEXMIFQ5QGS0 1516 aa17.4■□□□□ 0.38
VPS9D1-202ENST00000561976 PPIP5K1Q6PFW1 1433 aa17.4■□□□□ 0.38
VPS9D1-202ENST00000561976 HECW2Q9P2P5 1572 aa17.4■□□□□ 0.38
VPS9D1-202ENST00000561976 ELL2O00472 640 aaPredicted RBP17.4■□□□□ 0.38
VPS9D1-202ENST00000561976 PTMSP20962 102 aa17.4■□□□□ 0.38
VPS9D1-202ENST00000561976 IDI1Q13907 227 aa17.4■□□□□ 0.38
VPS9D1-202ENST00000561976 ZNF428Q96B54 188 aa17.4■□□□□ 0.38
VPS9D1-202ENST00000561976 FRMPD1Q5SYB0 1578 aa17.39■□□□□ 0.37
VPS9D1-202ENST00000561976 GAS2L3Q86XJ1 694 aa17.39■□□□□ 0.37
VPS9D1-202ENST00000561976 RBM42Q9BTD8 480 aaKnown RBP17.39■□□□□ 0.37
VPS9D1-202ENST00000561976 THUMPD2Q9BTF0 503 aaKnown RBP17.39■□□□□ 0.37
VPS9D1-202ENST00000561976 NPM1P06748 294 aaKnown RBP eCLIP17.38■□□□□ 0.37
VPS9D1-202ENST00000561976 POGZQ7Z3K3 1410 aa17.38■□□□□ 0.37
VPS9D1-202ENST00000561976 HMOX1P09601 288 aa17.38■□□□□ 0.37
VPS9D1-202ENST00000561976 FBLN1P23142 703 aa17.38■□□□□ 0.37
VPS9D1-202ENST00000561976 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.38■□□□□ 0.37
VPS9D1-202ENST00000561976 VAMP4O75379 141 aa17.37■□□□□ 0.37
VPS9D1-202ENST00000561976 MRPL50Q8N5N7 158 aaKnown RBP17.37■□□□□ 0.37
VPS9D1-202ENST00000561976 CABP1Q9NZU7 370 aa17.37■□□□□ 0.37
VPS9D1-202ENST00000561976 CFAP74Q9C0B2 1584 aa17.37■□□□□ 0.37
VPS9D1-202ENST00000561976 GOLGA6L22H0YM25 854 aa17.37■□□□□ 0.37
VPS9D1-202ENST00000561976 BRPF1P55201 1214 aaPredicted RBP17.37■□□□□ 0.37
VPS9D1-202ENST00000561976 MLH3Q9UHC1 1453 aa17.36■□□□□ 0.37
VPS9D1-202ENST00000561976 TSPYL6Q8N831 410 aa17.36■□□□□ 0.37
VPS9D1-202ENST00000561976 PNPLA6Q8IY17 1366 aa17.36■□□□□ 0.37
VPS9D1-202ENST00000561976 MED14O60244 1454 aa17.36■□□□□ 0.37
VPS9D1-202ENST00000561976 SSFA2P28290 1259 aa17.35■□□□□ 0.37
VPS9D1-202ENST00000561976 CALD1Q05682 793 aaKnown RBP17.35■□□□□ 0.37
VPS9D1-202ENST00000561976 ARHGAP45Q92619 1136 aa17.35■□□□□ 0.37
VPS9D1-202ENST00000561976 CDK19Q9BWU1 502 aa17.35■□□□□ 0.37
VPS9D1-202ENST00000561976 NFE2L2Q16236 605 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms