RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.04□□□□□ -1.28
VPS13C-209ENST00000560637 PNNQ9H307 717 aaKnown RBP7.04□□□□□ -1.28
VPS13C-209ENST00000560637 YTHDC2Q9H6S0 1430 aaKnown RBP7.04□□□□□ -1.28
VPS13C-209ENST00000560637 CARD14Q9BXL6 1004 aa7.04□□□□□ -1.28
VPS13C-209ENST00000560637 GOLGA2Q08379 1002 aa7.04□□□□□ -1.28
VPS13C-209ENST00000560637 INO80Q9ULG1 1556 aaPredicted RBP7.04□□□□□ -1.28
VPS13C-209ENST00000560637 ABCA6Q8N139 1617 aa7.03□□□□□ -1.28
VPS13C-209ENST00000560637 FYB1O15117 783 aa7.03□□□□□ -1.28
VPS13C-209ENST00000560637 LRRC59Q96AG4 307 aaKnown RBP7.03□□□□□ -1.28
VPS13C-209ENST00000560637 ZNF142P52746 1687 aaPredicted RBP7.03□□□□□ -1.28
VPS13C-209ENST00000560637 TMEM94Q12767 1356 aa7.03□□□□□ -1.28
VPS13C-209ENST00000560637 TSR2Q969E8 191 aaKnown RBP7.03□□□□□ -1.28
VPS13C-209ENST00000560637 ILDR1Q86SU0 546 aaPredicted RBP7.03□□□□□ -1.28
VPS13C-209ENST00000560637 SMC4Q9NTJ3 1288 aa7.03□□□□□ -1.28
VPS13C-209ENST00000560637 SLAIN2Q9P270 581 aa7.03□□□□□ -1.28
VPS13C-209ENST00000560637 PLXNC1O60486 1568 aa7.02□□□□□ -1.29
VPS13C-209ENST00000560637 ERVK-7P63135 1459 aa7.02□□□□□ -1.29
VPS13C-209ENST00000560637 PPIP5K1Q6PFW1 1433 aa7.02□□□□□ -1.29
VPS13C-209ENST00000560637 FAM177BA6PVY3 158 aa7.02□□□□□ -1.29
VPS13C-209ENST00000560637 RGS3P49796 1198 aa7.02□□□□□ -1.29
VPS13C-209ENST00000560637 AIMP1Q12904 312 aaKnown RBP7.02□□□□□ -1.29
VPS13C-209ENST00000560637 ZNF530Q6P9A1 599 aaPredicted RBP7.02□□□□□ -1.29
VPS13C-209ENST00000560637 TTC21BQ7Z4L5 1316 aa7.01□□□□□ -1.29
VPS13C-209ENST00000560637 ABCC3O15438 1527 aa7.01□□□□□ -1.29
VPS13C-209ENST00000560637 KLHL34Q8N239 644 aa7.01□□□□□ -1.29
VPS13C-209ENST00000560637 RBM42Q9BTD8 480 aaKnown RBP7.01□□□□□ -1.29
VPS13C-209ENST00000560637 KIDINS220Q9ULH0 1771 aa7.01□□□□□ -1.29
VPS13C-209ENST00000560637 PTCD1O75127 700 aaKnown RBP7.01□□□□□ -1.29
VPS13C-209ENST00000560637 MCM10Q7L590 875 aa7.01□□□□□ -1.29
VPS13C-209ENST00000560637 AEBP1Q8IUX7 1158 aa7.01□□□□□ -1.29
VPS13C-209ENST00000560637 ROBO2Q9HCK4 1378 aa7.01□□□□□ -1.29
VPS13C-209ENST00000560637 RTL5Q5HYW3 569 aaPredicted RBP7□□□□□ -1.29
VPS13C-209ENST00000560637 RCAN3Q9UKA8 241 aa7□□□□□ -1.29
VPS13C-209ENST00000560637 C3P01024 1663 aa7□□□□□ -1.29
VPS13C-209ENST00000560637 KDM5DQ9BY66 1539 aa7□□□□□ -1.29
VPS13C-209ENST00000560637 TTC5Q8N0Z6 440 aa7□□□□□ -1.29
VPS13C-209ENST00000560637 TSPYL4Q9UJ04 414 aa7□□□□□ -1.29
VPS13C-209ENST00000560637 CHMP3Q9Y3E7 222 aa7□□□□□ -1.29
VPS13C-209ENST00000560637 ITPRIPQ8IWB1 547 aa7□□□□□ -1.29
VPS13C-209ENST00000560637 NPHP3Q7Z494 1330 aa7□□□□□ -1.29
VPS13C-209ENST00000560637 ZC3H13Q5T200 1668 aaKnown RBP7□□□□□ -1.29
VPS13C-209ENST00000560637 FAM83GA6ND36 823 aa6.99□□□□□ -1.29
VPS13C-209ENST00000560637 MPRIPQ6WCQ1 1025 aa6.99□□□□□ -1.29
VPS13C-209ENST00000560637 RUNDC1Q96C34 613 aa6.99□□□□□ -1.29
VPS13C-209ENST00000560637 STK31Q9BXU1 1019 aa6.99□□□□□ -1.29
VPS13C-209ENST00000560637 EIF2AK4Q9P2K8 1649 aaKnown RBP6.99□□□□□ -1.29
VPS13C-209ENST00000560637 A0A1W2PP64 1363 aa6.99□□□□□ -1.29
VPS13C-209ENST00000560637 LRPPRCP42704 1394 aaKnown RBP6.99□□□□□ -1.29
VPS13C-209ENST00000560637 GCP02774 474 aa6.99□□□□□ -1.29
VPS13C-209ENST00000560637 TATP17735 454 aaPredicted RBP6.99□□□□□ -1.29
VPS13C-209ENST00000560637 MYH16Q9H6N6 1097 aa6.99□□□□□ -1.29
VPS13C-209ENST00000560637 EFCAB6Q5THR3 1501 aa6.98□□□□□ -1.29
VPS13C-209ENST00000560637 NPHP4O75161 1426 aaPredicted RBP6.98□□□□□ -1.29
VPS13C-209ENST00000560637 PNISRQ8TF01 805 aaKnown RBP6.98□□□□□ -1.29
VPS13C-209ENST00000560637 OS9Q13438 667 aaPredicted RBP6.98□□□□□ -1.29
VPS13C-209ENST00000560637 SPATA31E1Q6ZUB1 1445 aa6.98□□□□□ -1.29
VPS13C-209ENST00000560637 GTF2E1P29083 439 aaPredicted RBP6.98□□□□□ -1.29
VPS13C-209ENST00000560637 PDE3BQ13370 1112 aa6.98□□□□□ -1.29
VPS13C-209ENST00000560637 ANKRD24Q8TF21 1146 aa6.98□□□□□ -1.29
VPS13C-209ENST00000560637 ACSBG1Q96GR2 724 aa6.98□□□□□ -1.29
VPS13C-209ENST00000560637 RALGAPBQ86X10 1494 aa6.98□□□□□ -1.29
VPS13C-209ENST00000560637 FAM182BQ5T319 152 aa6.97□□□□□ -1.29
VPS13C-209ENST00000560637 CERKQ8TCT0 537 aa6.97□□□□□ -1.29
VPS13C-209ENST00000560637 PRR36Q9H6K5 1346 aa6.97□□□□□ -1.29
VPS13C-209ENST00000560637 KCNH5Q8NCM2 988 aa6.97□□□□□ -1.29
VPS13C-209ENST00000560637 BTG4Q9NY30 223 aa6.97□□□□□ -1.29
VPS13C-209ENST00000560637 SIGLEC1Q9BZZ2 1709 aa6.97□□□□□ -1.29
VPS13C-209ENST00000560637 POLKQ9UBT6 870 aa6.97□□□□□ -1.29
VPS13C-209ENST00000560637 COG6Q9Y2V7 657 aa6.96□□□□□ -1.29
VPS13C-209ENST00000560637 MAP3K19Q56UN5 1328 aa6.96□□□□□ -1.3
VPS13C-209ENST00000560637 A2ML1A8K2U0 1454 aa6.96□□□□□ -1.3
VPS13C-209ENST00000560637 EXOSC9Q06265 439 aaKnown RBP6.96□□□□□ -1.3
VPS13C-209ENST00000560637 LMOD3Q0VAK6 560 aa6.96□□□□□ -1.3
VPS13C-209ENST00000560637 PPP1R1BQ9UD71 204 aaPredicted RBP6.96□□□□□ -1.3
VPS13C-209ENST00000560637 PLEKHO1Q53GL0 409 aaPredicted RBP6.96□□□□□ -1.3
VPS13C-209ENST00000560637 GCC2Q8IWJ2 1684 aa6.96□□□□□ -1.3
VPS13C-209ENST00000560637 MYO3AQ8NEV4 1616 aa6.96□□□□□ -1.3
VPS13C-209ENST00000560637 NLRP1Q9C000 1473 aa6.95□□□□□ -1.3
VPS13C-209ENST00000560637 CPS1P31327 1500 aa6.95□□□□□ -1.3
VPS13C-209ENST00000560637 MYL6BP14649 208 aa6.95□□□□□ -1.3
VPS13C-209ENST00000560637 PIP4K2AP48426 406 aaPredicted RBP6.95□□□□□ -1.3
VPS13C-209ENST00000560637 FKBP5Q13451 457 aaPredicted RBP6.95□□□□□ -1.3
VPS13C-209ENST00000560637 CABP4P57796 275 aa6.95□□□□□ -1.3
VPS13C-209ENST00000560637 CALD1Q05682 793 aaKnown RBP6.95□□□□□ -1.3
VPS13C-209ENST00000560637 ANXA1P04083 346 aa6.95□□□□□ -1.3
VPS13C-209ENST00000560637 RNF17Q9BXT8 1623 aaKnown RBP6.94□□□□□ -1.3
VPS13C-209ENST00000560637 CEP170BQ9Y4F5 1589 aaPredicted RBP6.94□□□□□ -1.3
VPS13C-209ENST00000560637 ABCC11Q96J66 1382 aa6.94□□□□□ -1.3
VPS13C-209ENST00000560637 PLEKHG1Q9ULL1 1385 aa6.94□□□□□ -1.3
VPS13C-209ENST00000560637 WWC3Q9ULE0 1092 aa6.94□□□□□ -1.3
VPS13C-209ENST00000560637 CEP152O94986 1710 aa6.94□□□□□ -1.3
VPS13C-209ENST00000560637 PER1O15534 1290 aaPredicted RBP6.94□□□□□ -1.3
VPS13C-209ENST00000560637 SLC39A6Q13433 755 aa6.94□□□□□ -1.3
VPS13C-209ENST00000560637 EIF4A2Q14240 407 aaKnown RBP6.94□□□□□ -1.3
VPS13C-209ENST00000560637 STRCQ7RTU9 1775 aa6.94□□□□□ -1.3
VPS13C-209ENST00000560637 ANKRD36BQ8N2N9 1353 aa6.94□□□□□ -1.3
VPS13C-209ENST00000560637 BCAR3O75815 825 aa6.94□□□□□ -1.3
VPS13C-209ENST00000560637 BRD4O60885 1362 aaPredicted RBP6.93□□□□□ -1.3
VPS13C-209ENST00000560637 CLTCQ00610 1675 aaKnown RBP6.93□□□□□ -1.3
VPS13C-209ENST00000560637 TMPOP42166 694 aaKnown RBP6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 107.9 ms