RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 SPATA31A3Q5VYP0 1347 aa13.92□□□□□ -0.18
USP3-216ENST00000559873 EDC4Q6P2E9 1401 aaKnown RBP13.92□□□□□ -0.18
USP3-216ENST00000559873 PAK3O75914 559 aaPredicted RBP13.92□□□□□ -0.18
USP3-216ENST00000559873 SLC12A5Q9H2X9 1139 aa13.92□□□□□ -0.18
USP3-216ENST00000559873 CD163L1Q9NR16 1453 aa13.92□□□□□ -0.18
USP3-216ENST00000559873 TTC21AQ8NDW8 1320 aa13.91□□□□□ -0.18
USP3-216ENST00000559873 PNPLA6Q8IY17 1366 aa13.91□□□□□ -0.18
USP3-216ENST00000559873 NRKQ7Z2Y5 1582 aa13.91□□□□□ -0.18
USP3-216ENST00000559873 SPATA31A6Q5VVP1 1343 aa13.9□□□□□ -0.18
USP3-216ENST00000559873 LMOD2Q6P5Q4 547 aa13.9□□□□□ -0.18
USP3-216ENST00000559873 COL22A1Q8NFW1 1626 aaPredicted RBP13.9□□□□□ -0.19
USP3-216ENST00000559873 ALS2Q96Q42 1657 aa13.89□□□□□ -0.19
USP3-216ENST00000559873 SSH2Q76I76 1423 aa13.89□□□□□ -0.19
USP3-216ENST00000559873 WASHC2AQ641Q2 1341 aa13.89□□□□□ -0.19
USP3-216ENST00000559873 TTC21BQ7Z4L5 1316 aa13.89□□□□□ -0.19
USP3-216ENST00000559873 MED1Q15648 1581 aaPredicted RBP13.88□□□□□ -0.19
USP3-216ENST00000559873 C11orf95C9JLR9 678 aaPredicted RBP13.88□□□□□ -0.19
USP3-216ENST00000559873 ABTB2Q8N961 1025 aa13.88□□□□□ -0.19
USP3-216ENST00000559873 HAP1P54257 671 aaPredicted RBP13.86□□□□□ -0.19
USP3-216ENST00000559873 NLRP13Q86W25 1043 aa13.86□□□□□ -0.19
USP3-216ENST00000559873 NSD3Q9BZ95 1437 aa13.86□□□□□ -0.19
USP3-216ENST00000559873 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.85□□□□□ -0.199e-8■■■■□ 26.3
USP3-216ENST00000559873 PIK3C2AO00443 1686 aa13.85□□□□□ -0.19
USP3-216ENST00000559873 PANK3Q9H999 370 aa13.84□□□□□ -0.19
USP3-216ENST00000559873 CGNL1Q0VF96 1302 aa13.84□□□□□ -0.19
USP3-216ENST00000559873 USP54Q70EL1 1684 aa13.83□□□□□ -0.2
USP3-216ENST00000559873 NLRP6P59044 892 aa13.83□□□□□ -0.2
USP3-216ENST00000559873 KNSTRNQ9Y448 316 aa13.83□□□□□ -0.2
USP3-216ENST00000559873 NSD2O96028 1365 aa13.83□□□□□ -0.2
USP3-216ENST00000559873 USP31Q70CQ4 1352 aa13.83□□□□□ -0.2
USP3-216ENST00000559873 ABCA3Q99758 1704 aa13.82□□□□□ -0.2
USP3-216ENST00000559873 KIF20BQ96Q89 1820 aa13.82□□□□□ -0.2
USP3-216ENST00000559873 USP19O94966 1318 aa13.82□□□□□ -0.2
USP3-216ENST00000559873 PHRF1Q9P1Y6 1649 aaKnown RBP13.82□□□□□ -0.2
USP3-216ENST00000559873 SLIT3O75094 1523 aa13.81□□□□□ -0.2
USP3-216ENST00000559873 ZNF316A6NFI3 1004 aaPredicted RBP13.81□□□□□ -0.2
USP3-216ENST00000559873 NUTM2BA6NNL0 878 aaPredicted RBP13.81□□□□□ -0.2
USP3-216ENST00000559873 NUTM2EB1AL46 878 aaPredicted RBP13.81□□□□□ -0.2
USP3-216ENST00000559873 MEX3CQ5U5Q3 659 aaKnown RBP13.81□□□□□ -0.2
USP3-216ENST00000559873 NUTM2GQ5VZR2 741 aa13.81□□□□□ -0.2
USP3-216ENST00000559873 NME9Q86XW9 330 aa13.81□□□□□ -0.2
USP3-216ENST00000559873 NUTM2AQ8IVF1 878 aaPredicted RBP13.81□□□□□ -0.2
USP3-216ENST00000559873 KCNH5Q8NCM2 988 aa13.81□□□□□ -0.2
USP3-216ENST00000559873 COG3Q96JB2 828 aa13.81□□□□□ -0.2
USP3-216ENST00000559873 CRYBG1Q9Y4K1 1723 aa13.81□□□□□ -0.2
USP3-216ENST00000559873 OVOS2A0A0J9YW53 1432 aa13.81□□□□□ -0.2
USP3-216ENST00000559873 OVOS2Q6IE36 1432 aa13.81□□□□□ -0.2
USP3-216ENST00000559873 CARD14Q9BXL6 1004 aa13.8□□□□□ -0.2
USP3-216ENST00000559873 LRP6O75581 1613 aa13.79□□□□□ -0.2
USP3-216ENST00000559873 PLEKHG5O94827 1062 aa13.79□□□□□ -0.2
USP3-216ENST00000559873 CABLES1Q8TDN4 633 aa13.78□□□□□ -0.2
USP3-216ENST00000559873 FYB1O15117 783 aa13.77□□□□□ -0.21
USP3-216ENST00000559873 ADAMTS2O95450 1211 aa13.77□□□□□ -0.21
USP3-216ENST00000559873 ANKRD26Q9UPS8 1709 aa13.76□□□□□ -0.21
USP3-216ENST00000559873 CPDO75976 1380 aa13.76□□□□□ -0.21
USP3-216ENST00000559873 GGNBP2Q9H3C7 697 aa13.76□□□□□ -0.21
USP3-216ENST00000559873 PRDM11Q9NQV5 511 aa13.76□□□□□ -0.21
USP3-216ENST00000559873 MARF1Q9Y4F3 1742 aaKnown RBP13.76□□□□□ -0.21
USP3-216ENST00000559873 NPC1L1Q9UHC9 1359 aa13.75□□□□□ -0.21
USP3-216ENST00000559873 GCP02774 474 aa13.75□□□□□ -0.21
USP3-216ENST00000559873 PHF23Q9BUL5 403 aaPredicted RBP13.75□□□□□ -0.21
USP3-216ENST00000559873 NFAT5O94916 1531 aa13.74□□□□□ -0.21
USP3-216ENST00000559873 ABCC6O95255 1503 aa13.74□□□□□ -0.21
USP3-216ENST00000559873 KIAA0232Q92628 1395 aa13.74□□□□□ -0.21
USP3-216ENST00000559873 COL14A1Q05707 1796 aaKnown RBP13.74□□□□□ -0.21
USP3-216ENST00000559873 C8orf37Q96NL8 207 aa13.74□□□□□ -0.21
USP3-216ENST00000559873 SOX12O15370 315 aa13.73□□□□□ -0.21
USP3-216ENST00000559873 NGLY1Q96IV0 654 aa13.73□□□□□ -0.21
USP3-216ENST00000559873 ZRANB1Q9UGI0 708 aa13.73□□□□□ -0.21
USP3-216ENST00000559873 PER1O15534 1290 aaPredicted RBP13.72□□□□□ -0.21
USP3-216ENST00000559873 ZC3H6P61129 1189 aaKnown RBP13.72□□□□□ -0.21
USP3-216ENST00000559873 DDX10Q13206 875 aaKnown RBP13.72□□□□□ -0.21
USP3-216ENST00000559873 AMER1Q5JTC6 1135 aaPredicted RBP13.72□□□□□ -0.21
USP3-216ENST00000559873 MORC1Q86VD1 984 aa13.72□□□□□ -0.21
USP3-216ENST00000559873 RTL1A6NKG5 1358 aa13.71□□□□□ -0.21
USP3-216ENST00000559873 ZBTB7CA1YPR0 619 aa13.71□□□□□ -0.21
USP3-216ENST00000559873 ZNF772Q68DY9 489 aaPredicted RBP13.71□□□□□ -0.21
USP3-216ENST00000559873 PLCH1Q4KWH8 1693 aa13.71□□□□□ -0.21
USP3-216ENST00000559873 KIF24Q5T7B8 1368 aa13.71□□□□□ -0.22
USP3-216ENST00000559873 AATKQ6ZMQ8 1374 aa13.71□□□□□ -0.22
USP3-216ENST00000559873 NWD2Q9ULI1 1742 aa13.7□□□□□ -0.22
USP3-216ENST00000559873 SLIT2O94813 1529 aa13.69□□□□□ -0.22
USP3-216ENST00000559873 AFF2P51816 1311 aa13.69□□□□□ -0.22
USP3-216ENST00000559873 LTN1O94822 1766 aa13.69□□□□□ -0.22
USP3-216ENST00000559873 CC2D1BQ5T0F9 858 aaKnown RBP13.69□□□□□ -0.22
USP3-216ENST00000559873 ARHGEF25Q86VW2 580 aa13.69□□□□□ -0.22
USP3-216ENST00000559873 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.68□□□□□ -0.22
USP3-216ENST00000559873 BLMP54132 1417 aaPredicted RBP13.68□□□□□ -0.22
USP3-216ENST00000559873 FNBP4Q8N3X1 1017 aaPredicted RBP13.68□□□□□ -0.22
USP3-216ENST00000559873 USP21Q9UK80 565 aa13.68□□□□□ -0.22
USP3-216ENST00000559873 SMG6Q86US8 1419 aaKnown RBP13.67□□□□□ -0.22
USP3-216ENST00000559873 LMO7Q8WWI1 1683 aa13.67□□□□□ -0.22
USP3-216ENST00000559873 AMPHP49418 695 aa13.67□□□□□ -0.22
USP3-216ENST00000559873 CHRNA2Q15822 529 aa13.67□□□□□ -0.22
USP3-216ENST00000559873 BTG4Q9NY30 223 aa13.67□□□□□ -0.22
USP3-216ENST00000559873 FLT4P35916 1363 aa13.67□□□□□ -0.22
USP3-216ENST00000559873 MAP3K19Q56UN5 1328 aa13.66□□□□□ -0.22
USP3-216ENST00000559873 FAM83GA6ND36 823 aa13.66□□□□□ -0.22
USP3-216ENST00000559873 TNNT2P45379 298 aaPredicted RBP13.66□□□□□ -0.22
USP3-216ENST00000559873 UNC5CLQ8IV45 518 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms