RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 SBNO1A3KN83 1393 aa12.68□□□□□ -0.38
LDLR-210ENST00000559340 TTC21AQ8NDW8 1320 aa12.67□□□□□ -0.38
LDLR-210ENST00000559340 PAK3O75914 559 aaPredicted RBP12.67□□□□□ -0.38
LDLR-210ENST00000559340 USP6P35125 1406 aa12.66□□□□□ -0.38
LDLR-210ENST00000559340 EDC4Q6P2E9 1401 aaKnown RBP12.66□□□□□ -0.38
LDLR-210ENST00000559340 KNSTRNQ9Y448 316 aa12.66□□□□□ -0.38
LDLR-210ENST00000559340 A0A1W2PP64 1363 aa12.66□□□□□ -0.38
LDLR-210ENST00000559340 SPATA31A6Q5VVP1 1343 aa12.65□□□□□ -0.38
LDLR-210ENST00000559340 ARHGEF10O15013 1369 aa12.65□□□□□ -0.38
LDLR-210ENST00000559340 CGNL1Q0VF96 1302 aa12.64□□□□□ -0.39
LDLR-210ENST00000559340 TTC21BQ7Z4L5 1316 aa12.64□□□□□ -0.39
LDLR-210ENST00000559340 XPCQ01831 940 aaPredicted RBP12.64□□□□□ -0.39
LDLR-210ENST00000559340 LMOD2Q6P5Q4 547 aa12.64□□□□□ -0.39
LDLR-210ENST00000559340 ABTB2Q8N961 1025 aa12.64□□□□□ -0.39
LDLR-210ENST00000559340 DDX17Q92841 729 aaKnown RBP12.64□□□□□ -0.39
LDLR-210ENST00000559340 TRPM3Q9HCF6 1732 aaPredicted RBP12.64□□□□□ -0.39
LDLR-210ENST00000559340 PXDNQ92626 1479 aa12.64□□□□□ -0.39
LDLR-210ENST00000559340 CD163L1Q9NR16 1453 aa12.64□□□□□ -0.39
LDLR-210ENST00000559340 SPATA31A3Q5VYP0 1347 aa12.63□□□□□ -0.39
LDLR-210ENST00000559340 DDX10Q13206 875 aaKnown RBP12.63□□□□□ -0.39
LDLR-210ENST00000559340 NLRP13Q86W25 1043 aa12.63□□□□□ -0.39
LDLR-210ENST00000559340 TNS3Q68CZ2 1445 aa12.62□□□□□ -0.39
LDLR-210ENST00000559340 KIF20BQ96Q89 1820 aa12.62□□□□□ -0.39
LDLR-210ENST00000559340 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.62□□□□□ -0.39
LDLR-210ENST00000559340 COL16A1Q07092 1604 aaPredicted RBP12.62□□□□□ -0.39
LDLR-210ENST00000559340 ALS2Q96Q42 1657 aa12.61□□□□□ -0.39
LDLR-210ENST00000559340 NLRP6P59044 892 aa12.61□□□□□ -0.39
LDLR-210ENST00000559340 ZNF772Q68DY9 489 aaPredicted RBP12.61□□□□□ -0.39
LDLR-210ENST00000559340 CARD14Q9BXL6 1004 aa12.61□□□□□ -0.39
LDLR-210ENST00000559340 SSH2Q76I76 1423 aa12.61□□□□□ -0.39
LDLR-210ENST00000559340 NSD3Q9BZ95 1437 aa12.61□□□□□ -0.39
LDLR-210ENST00000559340 NSD2O96028 1365 aa12.6□□□□□ -0.39
LDLR-210ENST00000559340 MEX3CQ5U5Q3 659 aaKnown RBP12.6□□□□□ -0.39
LDLR-210ENST00000559340 COG3Q96JB2 828 aa12.6□□□□□ -0.39
LDLR-210ENST00000559340 NRKQ7Z2Y5 1582 aa12.6□□□□□ -0.39
LDLR-210ENST00000559340 SHPRHQ149N8 1683 aa12.59□□□□□ -0.39
LDLR-210ENST00000559340 HAP1P54257 671 aaPredicted RBP12.59□□□□□ -0.39
LDLR-210ENST00000559340 USP31Q70CQ4 1352 aa12.58□□□□□ -0.4
LDLR-210ENST00000559340 FYB1O15117 783 aa12.58□□□□□ -0.4
LDLR-210ENST00000559340 PER1O15534 1290 aaPredicted RBP12.58□□□□□ -0.4
LDLR-210ENST00000559340 KCNH5Q8NCM2 988 aa12.58□□□□□ -0.4
LDLR-210ENST00000559340 ANKRD26Q9UPS8 1709 aa12.58□□□□□ -0.4
LDLR-210ENST00000559340 NPC1L1Q9UHC9 1359 aa12.57□□□□□ -0.4
LDLR-210ENST00000559340 NME9Q86XW9 330 aa12.57□□□□□ -0.4
LDLR-210ENST00000559340 LRP6O75581 1613 aa12.57□□□□□ -0.4
LDLR-210ENST00000559340 PIK3C2AO00443 1686 aa12.57□□□□□ -0.4
LDLR-210ENST00000559340 USP54Q70EL1 1684 aa12.57□□□□□ -0.4
LDLR-210ENST00000559340 PNPLA6Q8IY17 1366 aa12.56□□□□□ -0.4
LDLR-210ENST00000559340 COL22A1Q8NFW1 1626 aaPredicted RBP12.56□□□□□ -0.4
LDLR-210ENST00000559340 MAP2P11137 1827 aaKnown RBP12.56□□□□□ -0.4
LDLR-210ENST00000559340 NUTM2GQ5VZR2 741 aa12.56□□□□□ -0.4
LDLR-210ENST00000559340 MORC1Q86VD1 984 aa12.55□□□□□ -0.4
LDLR-210ENST00000559340 GGNBP2Q9H3C7 697 aa12.55□□□□□ -0.4
LDLR-210ENST00000559340 AMER1Q5JTC6 1135 aaPredicted RBP12.54□□□□□ -0.4
LDLR-210ENST00000559340 GCP02774 474 aa12.53□□□□□ -0.4
LDLR-210ENST00000559340 RXRBP28702 533 aa12.53□□□□□ -0.4
LDLR-210ENST00000559340 CC2D1BQ5T0F9 858 aaKnown RBP12.53□□□□□ -0.4
LDLR-210ENST00000559340 USP19O94966 1318 aa12.53□□□□□ -0.4
LDLR-210ENST00000559340 MARF1Q9Y4F3 1742 aaKnown RBP12.53□□□□□ -0.4
LDLR-210ENST00000559340 NUTM2BA6NNL0 878 aaPredicted RBP12.52□□□□□ -0.41
LDLR-210ENST00000559340 NUTM2EB1AL46 878 aaPredicted RBP12.52□□□□□ -0.41
LDLR-210ENST00000559340 RALBP1Q15311 655 aa12.52□□□□□ -0.41
LDLR-210ENST00000559340 NUTM2AQ8IVF1 878 aaPredicted RBP12.52□□□□□ -0.41
LDLR-210ENST00000559340 OVOS2A0A0J9YW53 1432 aa12.52□□□□□ -0.41
LDLR-210ENST00000559340 OVOS2Q6IE36 1432 aa12.52□□□□□ -0.41
LDLR-210ENST00000559340 CDK12Q9NYV4 1490 aaPredicted RBP12.52□□□□□ -0.41
LDLR-210ENST00000559340 PHRF1Q9P1Y6 1649 aaKnown RBP12.51□□□□□ -0.41
LDLR-210ENST00000559340 PLEKHG5O94827 1062 aa12.51□□□□□ -0.41
LDLR-210ENST00000559340 CABLES1Q8TDN4 633 aa12.51□□□□□ -0.41
LDLR-210ENST00000559340 UPF1Q92900 1129 aaKnown RBP eCLIP12.51□□□□□ -0.41
LDLR-210ENST00000559340 ZRANB1Q9UGI0 708 aa12.51□□□□□ -0.41
LDLR-210ENST00000559340 SLIT3O75094 1523 aa12.51□□□□□ -0.41
LDLR-210ENST00000559340 ABCA3Q99758 1704 aa12.51□□□□□ -0.41
LDLR-210ENST00000559340 CRYBG1Q9Y4K1 1723 aa12.51□□□□□ -0.41
LDLR-210ENST00000559340 ANP32CO43423 234 aa12.5□□□□□ -0.41
LDLR-210ENST00000559340 LTN1O94822 1766 aa12.5□□□□□ -0.41
LDLR-210ENST00000559340 AATKQ6ZMQ8 1374 aa12.49□□□□□ -0.41
LDLR-210ENST00000559340 SOX12O15370 315 aa12.49□□□□□ -0.41
LDLR-210ENST00000559340 CNGB1Q14028 1251 aaPredicted RBP12.49□□□□□ -0.41
LDLR-210ENST00000559340 CPDO75976 1380 aa12.48□□□□□ -0.41
LDLR-210ENST00000559340 AFF2P51816 1311 aa12.48□□□□□ -0.41
LDLR-210ENST00000559340 AMPHP49418 695 aa12.48□□□□□ -0.41
LDLR-210ENST00000559340 ZC3H6P61129 1189 aaKnown RBP12.48□□□□□ -0.41
LDLR-210ENST00000559340 PRDM11Q9NQV5 511 aa12.48□□□□□ -0.41
LDLR-210ENST00000559340 KIF24Q5T7B8 1368 aa12.47□□□□□ -0.41
LDLR-210ENST00000559340 ZBTB7CA1YPR0 619 aa12.47□□□□□ -0.41
LDLR-210ENST00000559340 ADAMTS2O95450 1211 aa12.47□□□□□ -0.41
LDLR-210ENST00000559340 TNNT2P45379 298 aaPredicted RBP12.47□□□□□ -0.41
LDLR-210ENST00000559340 ARHGEF25Q86VW2 580 aa12.47□□□□□ -0.41
LDLR-210ENST00000559340 COL14A1Q05707 1796 aaKnown RBP12.46□□□□□ -0.41
LDLR-210ENST00000559340 DIEXFQ68CQ4 756 aaKnown RBP12.46□□□□□ -0.41
LDLR-210ENST00000559340 NGLY1Q96IV0 654 aa12.46□□□□□ -0.41
LDLR-210ENST00000559340 NFAT5O94916 1531 aa12.46□□□□□ -0.42
LDLR-210ENST00000559340 PARD3Q8TEW0 1356 aa12.45□□□□□ -0.42
LDLR-210ENST00000559340 KIAA0232Q92628 1395 aa12.45□□□□□ -0.42
LDLR-210ENST00000559340 RBM6P78332 1123 aaKnown RBP12.45□□□□□ -0.42
LDLR-210ENST00000559340 CFAP53Q96M91 514 aa12.45□□□□□ -0.42
LDLR-210ENST00000559340 C8orf37Q96NL8 207 aa12.45□□□□□ -0.42
LDLR-210ENST00000559340 PRKRIP1Q9H875 184 aaPredicted RBP12.45□□□□□ -0.42
LDLR-210ENST00000559340 ABCC6O95255 1503 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 83.2 ms