RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 NSD2O96028 1365 aa16.46■□□□□ 0.23
LDLR-207ENST00000558013 MYO5BQ9ULV0 1848 aa16.46■□□□□ 0.22
LDLR-207ENST00000558013 RWDD1Q9H446 243 aaPredicted RBP16.45■□□□□ 0.22
LDLR-207ENST00000558013 STAG3Q9UJ98 1225 aa16.45■□□□□ 0.22
LDLR-207ENST00000558013 USP32Q8NFA0 1604 aa16.45■□□□□ 0.22
LDLR-207ENST00000558013 CD163L1Q9NR16 1453 aa16.45■□□□□ 0.22
LDLR-207ENST00000558013 THUMPD2Q9BTF0 503 aaKnown RBP16.45■□□□□ 0.22
LDLR-207ENST00000558013 TERF2IPQ9NYB0 399 aa16.45■□□□□ 0.22
LDLR-207ENST00000558013 PTPRMP28827 1452 aa16.45■□□□□ 0.22
LDLR-207ENST00000558013 SPRYD3Q8NCJ5 442 aa16.45■□□□□ 0.22
LDLR-207ENST00000558013 CYB5RLQ6IPT4 315 aa16.44■□□□□ 0.22
LDLR-207ENST00000558013 NLRP1Q9C000 1473 aa16.44■□□□□ 0.22
LDLR-207ENST00000558013 YTHDC2Q9H6S0 1430 aaKnown RBP16.44■□□□□ 0.22
LDLR-207ENST00000558013 CFAP74Q9C0B2 1584 aa16.44■□□□□ 0.22
LDLR-207ENST00000558013 DIAPH1O60610 1272 aaKnown RBP16.43■□□□□ 0.22
LDLR-207ENST00000558013 HMOX1P09601 288 aa16.43■□□□□ 0.22
LDLR-207ENST00000558013 MLECQ14165 292 aa16.43■□□□□ 0.22
LDLR-207ENST00000558013 TMEM57Q8N5G2 664 aa16.43■□□□□ 0.22
LDLR-207ENST00000558013 COL3A1P02461 1466 aaPredicted RBP16.42■□□□□ 0.22
LDLR-207ENST00000558013 ZRANB1Q9UGI0 708 aa16.42■□□□□ 0.22
LDLR-207ENST00000558013 NEO1Q92859 1461 aa16.42■□□□□ 0.22
LDLR-207ENST00000558013 PHACTR3Q96KR7 559 aa16.42■□□□□ 0.22
LDLR-207ENST00000558013 NCKAP5LQ9HCH0 1330 aa16.41■□□□□ 0.22
LDLR-207ENST00000558013 ATF7IPQ6VMQ6 1270 aa16.41■□□□□ 0.22
LDLR-207ENST00000558013 ARHGAP31Q2M1Z3 1444 aa16.41■□□□□ 0.22
LDLR-207ENST00000558013 PRKAR2BP31323 418 aa16.41■□□□□ 0.22
LDLR-207ENST00000558013 ADGRB2O60241 1585 aa16.41■□□□□ 0.22
LDLR-207ENST00000558013 ELL2O00472 640 aaPredicted RBP16.4■□□□□ 0.22
LDLR-207ENST00000558013 HDGFL2Q7Z4V5 671 aaPredicted RBP16.4■□□□□ 0.22
LDLR-207ENST00000558013 TBC1D32Q96NH3 1257 aa16.4■□□□□ 0.22
LDLR-207ENST00000558013 POLKQ9UBT6 870 aa16.4■□□□□ 0.22
LDLR-207ENST00000558013 ATAD2Q6PL18 1390 aa16.4■□□□□ 0.22
LDLR-207ENST00000558013 EMILIN1Q9Y6C2 1016 aa16.39■□□□□ 0.21
LDLR-207ENST00000558013 ZFYVE9O95405 1425 aa16.39■□□□□ 0.21
LDLR-207ENST00000558013 TBC1D2Q9BYX2 928 aa16.39■□□□□ 0.21
LDLR-207ENST00000558013 TMEM131LA2VDJ0 1609 aa16.38■□□□□ 0.21
LDLR-207ENST00000558013 MFAP1P55081 439 aaKnown RBP16.38■□□□□ 0.21
LDLR-207ENST00000558013 TSPYL6Q8N831 410 aa16.37■□□□□ 0.21
LDLR-207ENST00000558013 AAMPQ13685 434 aa16.36■□□□□ 0.21
LDLR-207ENST00000558013 RICTORQ6R327 1708 aa16.36■□□□□ 0.21
LDLR-207ENST00000558013 FAM69CQ0P6D2 419 aa16.36■□□□□ 0.21
LDLR-207ENST00000558013 NME9Q86XW9 330 aa16.36■□□□□ 0.21
LDLR-207ENST00000558013 RSPH6AQ9H0K4 717 aa16.36■□□□□ 0.21
LDLR-207ENST00000558013 C1orf115Q9H7X2 142 aa16.36■□□□□ 0.21
LDLR-207ENST00000558013 UPF2Q9HAU5 1272 aaKnown RBP16.36■□□□□ 0.21
LDLR-207ENST00000558013 ZBTB40Q9NUA8 1239 aa16.36■□□□□ 0.21
LDLR-207ENST00000558013 DDX19BQ9UMR2 479 aa16.36■□□□□ 0.21
LDLR-207ENST00000558013 VIRMAQ69YN4 1812 aaKnown RBP16.35■□□□□ 0.21
LDLR-207ENST00000558013 ARHGEF40Q8TER5 1519 aa16.35■□□□□ 0.21
LDLR-207ENST00000558013 BECN1Q14457 450 aa16.35■□□□□ 0.21
LDLR-207ENST00000558013 ANTXR1Q9H6X2 564 aa16.35■□□□□ 0.21
LDLR-207ENST00000558013 PNPLA6Q8IY17 1366 aa16.35■□□□□ 0.21
LDLR-207ENST00000558013 ALKQ9UM73 1620 aa16.35■□□□□ 0.21
LDLR-207ENST00000558013 PREX1Q8TCU6 1659 aa16.35■□□□□ 0.21
LDLR-207ENST00000558013 NCBP3Q53F19 620 aaKnown RBP16.34■□□□□ 0.21
LDLR-207ENST00000558013 LNPKQ9C0E8 428 aa16.34■□□□□ 0.21
LDLR-207ENST00000558013 CT47B1P0C2W7 299 aaPredicted RBP16.34■□□□□ 0.21
LDLR-207ENST00000558013 RRS1Q15050 365 aaKnown RBP16.33■□□□□ 0.21
LDLR-207ENST00000558013 TXNDC2Q86VQ3 553 aa16.33■□□□□ 0.21
LDLR-207ENST00000558013 FCHSD2O94868 740 aa16.33■□□□□ 0.2
LDLR-207ENST00000558013 HDAC1Q13547 482 aaPredicted RBP16.33■□□□□ 0.2
LDLR-207ENST00000558013 FAM83GA6ND36 823 aa16.32■□□□□ 0.2
LDLR-207ENST00000558013 IL16Q14005 1332 aa16.31■□□□□ 0.2
LDLR-207ENST00000558013 DCTN1Q14203 1278 aa16.31■□□□□ 0.2
LDLR-207ENST00000558013 SMC5Q8IY18 1101 aa16.31■□□□□ 0.2
LDLR-207ENST00000558013 C22orf23Q9BZE7 217 aa16.31■□□□□ 0.2
LDLR-207ENST00000558013 LRRC7Q96NW7 1537 aa16.31■□□□□ 0.2
LDLR-207ENST00000558013 ARXQ96QS3 562 aa16.3■□□□□ 0.2
LDLR-207ENST00000558013 VAMP4O75379 141 aa16.29■□□□□ 0.2
LDLR-207ENST00000558013 NUTM2FA1L443 756 aa16.28■□□□□ 0.2
LDLR-207ENST00000558013 MBIPQ9NS73 344 aa16.28■□□□□ 0.2
LDLR-207ENST00000558013 KIF16BQ96L93 1317 aa16.28■□□□□ 0.2
LDLR-207ENST00000558013 MED14O60244 1454 aa16.28■□□□□ 0.2
LDLR-207ENST00000558013 METP08581 1390 aa16.28■□□□□ 0.2
LDLR-207ENST00000558013 IPO8O15397 1037 aaKnown RBP16.28■□□□□ 0.2
LDLR-207ENST00000558013 IL13P35225 146 aa16.28■□□□□ 0.2
LDLR-207ENST00000558013 NFE2L2Q16236 605 aa16.28■□□□□ 0.2
LDLR-207ENST00000558013 C8orf58Q8NAV2 365 aa16.27■□□□□ 0.19
LDLR-207ENST00000558013 FAM135BQ49AJ0 1406 aa16.27■□□□□ 0.19
LDLR-207ENST00000558013 WASLO00401 505 aaPredicted RBP16.26■□□□□ 0.19
LDLR-207ENST00000558013 ZBTB7BO15156 539 aaPredicted RBP16.26■□□□□ 0.19
LDLR-207ENST00000558013 NUCB1Q02818 461 aa16.26■□□□□ 0.19
LDLR-207ENST00000558013 A2ML1A8K2U0 1454 aa16.25■□□□□ 0.19
LDLR-207ENST00000558013 ANKRD45Q5TZF3 282 aa16.25■□□□□ 0.19
LDLR-207ENST00000558013 MRPL50Q8N5N7 158 aaKnown RBP16.25■□□□□ 0.19
LDLR-207ENST00000558013 RIMS2Q9UQ26 1411 aa16.25■□□□□ 0.19
LDLR-207ENST00000558013 KRT24Q2M2I5 525 aa16.25■□□□□ 0.19
LDLR-207ENST00000558013 ALDH1L2Q3SY69 923 aa16.25■□□□□ 0.19
LDLR-207ENST00000558013 SIRT2Q8IXJ6 389 aa16.25■□□□□ 0.19
LDLR-207ENST00000558013 PNNQ9H307 717 aaKnown RBP16.25■□□□□ 0.19
LDLR-207ENST00000558013 CHD1LQ86WJ1 897 aa16.25■□□□□ 0.19
LDLR-207ENST00000558013 NUDT16Q96DE0 195 aaKnown RBP16.25■□□□□ 0.19
LDLR-207ENST00000558013 PPIP5K1Q6PFW1 1433 aa16.24■□□□□ 0.19
LDLR-207ENST00000558013 CLTCQ00610 1675 aaKnown RBP16.24■□□□□ 0.19
LDLR-207ENST00000558013 AEBP1Q8IUX7 1158 aa16.24■□□□□ 0.19
LDLR-207ENST00000558013 ANO8Q9HCE9 1232 aaPredicted RBP16.24■□□□□ 0.19
LDLR-207ENST00000558013 GZF1Q9H116 711 aaPredicted RBP16.23■□□□□ 0.19
LDLR-207ENST00000558013 ZMYM3Q14202 1370 aa16.23■□□□□ 0.19
LDLR-207ENST00000558013 ANKRD26Q9UPS8 1709 aa16.23■□□□□ 0.19
LDLR-207ENST00000558013 SOX12O15370 315 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms