RNA–Protein interactions for RNA: ENST00000557623.5

SLIRP-211, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2 BASIC

Gene SLIRP, Length 865 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-211ENST00000557623 NUTM2BA6NNL0 878 aaPredicted RBP17.68■□□□□ 0.42
SLIRP-211ENST00000557623 NUTM2EB1AL46 878 aaPredicted RBP17.68■□□□□ 0.42
SLIRP-211ENST00000557623 NUTM2AQ8IVF1 878 aaPredicted RBP17.68■□□□□ 0.42
SLIRP-211ENST00000557623 NGDNQ8NEJ9 315 aaKnown RBP17.68■□□□□ 0.42
SLIRP-211ENST00000557623 TRPM3Q9HCF6 1732 aaPredicted RBP17.68■□□□□ 0.42
SLIRP-211ENST00000557623 SPATA31A3Q5VYP0 1347 aa17.68■□□□□ 0.42
SLIRP-211ENST00000557623 MARF1Q9Y4F3 1742 aaKnown RBP17.67■□□□□ 0.42
SLIRP-211ENST00000557623 TNS3Q68CZ2 1445 aa17.66■□□□□ 0.42
SLIRP-211ENST00000557623 CABP2Q9NPB3 220 aa17.66■□□□□ 0.42
SLIRP-211ENST00000557623 ALS2Q96Q42 1657 aa17.64■□□□□ 0.42
SLIRP-211ENST00000557623 PLEKHG3A1L390 1219 aa17.64■□□□□ 0.41
SLIRP-211ENST00000557623 SLC24A1O60721 1099 aa17.64■□□□□ 0.41
SLIRP-211ENST00000557623 POLR3AO14802 1390 aaPredicted RBP17.64■□□□□ 0.41
SLIRP-211ENST00000557623 ARHGEF10O15013 1369 aa17.64■□□□□ 0.41
SLIRP-211ENST00000557623 PPIP5K1Q6PFW1 1433 aa17.64■□□□□ 0.41
SLIRP-211ENST00000557623 ACEP12821 1306 aa17.62■□□□□ 0.41
SLIRP-211ENST00000557623 LMOD2Q6P5Q4 547 aa17.61■□□□□ 0.41
SLIRP-211ENST00000557623 ATAD2Q6PL18 1390 aa17.61■□□□□ 0.41
SLIRP-211ENST00000557623 ABCA3Q99758 1704 aa17.61■□□□□ 0.41
SLIRP-211ENST00000557623 RGS17Q9UGC6 210 aaPredicted RBP17.6■□□□□ 0.41
SLIRP-211ENST00000557623 AKAP12Q02952 1782 aa17.59■□□□□ 0.41
SLIRP-211ENST00000557623 USP47Q96K76 1375 aa17.59■□□□□ 0.41
SLIRP-211ENST00000557623 ST20-MTHFSA0A0A6YYL1 179 aa17.59■□□□□ 0.41
SLIRP-211ENST00000557623 PAK3O75914 559 aaPredicted RBP17.59■□□□□ 0.41
SLIRP-211ENST00000557623 ADAMTS2O95450 1211 aa17.59■□□□□ 0.41
SLIRP-211ENST00000557623 ZNF772Q68DY9 489 aaPredicted RBP17.59■□□□□ 0.41
SLIRP-211ENST00000557623 C8orf37Q96NL8 207 aa17.58■□□□□ 0.4
SLIRP-211ENST00000557623 CABP1Q9NZU7 370 aa17.58■□□□□ 0.4
SLIRP-211ENST00000557623 BRD4O60885 1362 aaPredicted RBP17.57■□□□□ 0.4
SLIRP-211ENST00000557623 HAP1P54257 671 aaPredicted RBP17.57■□□□□ 0.4
SLIRP-211ENST00000557623 ILDR2Q71H61 639 aa17.57■□□□□ 0.4
SLIRP-211ENST00000557623 PUS7Q96PZ0 661 aaKnown RBP17.57■□□□□ 0.4
SLIRP-211ENST00000557623 NGLY1Q96IV0 654 aa17.56■□□□□ 0.4
SLIRP-211ENST00000557623 CRYBG1Q9Y4K1 1723 aa17.55■□□□□ 0.4
SLIRP-211ENST00000557623 AFF2P51816 1311 aa17.55■□□□□ 0.4
SLIRP-211ENST00000557623 TESK2Q96S53 571 aa17.55■□□□□ 0.4
SLIRP-211ENST00000557623 ZNF692Q9BU19 519 aaPredicted RBP17.54■□□□□ 0.4
SLIRP-211ENST00000557623 POTEAQ6S8J7 498 aa17.53■□□□□ 0.4
SLIRP-211ENST00000557623 USP6P35125 1406 aa17.53■□□□□ 0.4
SLIRP-211ENST00000557623 MON2Q7Z3U7 1717 aa17.52■□□□□ 0.4
SLIRP-211ENST00000557623 PHRF1Q9P1Y6 1649 aaKnown RBP17.52■□□□□ 0.4
SLIRP-211ENST00000557623 TMF1P82094 1093 aa17.52■□□□□ 0.4
SLIRP-211ENST00000557623 CABLES1Q8TDN4 633 aa17.52■□□□□ 0.4
SLIRP-211ENST00000557623 FNBP4Q8N3X1 1017 aaPredicted RBP17.51■□□□□ 0.39
SLIRP-211ENST00000557623 ABTB2Q8N961 1025 aa17.51■□□□□ 0.39
SLIRP-211ENST00000557623 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.51■□□□□ 0.39
SLIRP-211ENST00000557623 NWD2Q9ULI1 1742 aa17.5■□□□□ 0.39
SLIRP-211ENST00000557623 CPSF1Q10570 1443 aaKnown RBP17.5■□□□□ 0.39
SLIRP-211ENST00000557623 PLEKHG5O94827 1062 aa17.5■□□□□ 0.39
SLIRP-211ENST00000557623 NINLQ9Y2I6 1382 aa17.5■□□□□ 0.39
SLIRP-211ENST00000557623 PLCH1Q4KWH8 1693 aa17.49■□□□□ 0.39
SLIRP-211ENST00000557623 CDCA8Q53HL2 280 aa17.49■□□□□ 0.39
SLIRP-211ENST00000557623 TMC1Q8TDI8 760 aa17.49■□□□□ 0.39
SLIRP-211ENST00000557623 USP21Q9UK80 565 aa17.49■□□□□ 0.39
SLIRP-211ENST00000557623 NRKQ7Z2Y5 1582 aa17.49■□□□□ 0.39
SLIRP-211ENST00000557623 NLRP13Q86W25 1043 aa17.48■□□□□ 0.39
SLIRP-211ENST00000557623 KTN1Q86UP2 1357 aaKnown RBP17.48■□□□□ 0.39
SLIRP-211ENST00000557623 COL14A1Q05707 1796 aaKnown RBP17.48■□□□□ 0.39
SLIRP-211ENST00000557623 SSH2Q76I76 1423 aa17.47■□□□□ 0.39
SLIRP-211ENST00000557623 EIF4G2P78344 907 aaKnown RBP eCLIP17.47■□□□□ 0.39
SLIRP-211ENST00000557623 HDGFL2Q7Z4V5 671 aaPredicted RBP17.47■□□□□ 0.39
SLIRP-211ENST00000557623 QTRT2Q9H974 415 aaKnown RBP17.47■□□□□ 0.39
SLIRP-211ENST00000557623 PIK3C2AO00443 1686 aa17.47■□□□□ 0.39
SLIRP-211ENST00000557623 SLIT2O94813 1529 aa17.47■□□□□ 0.39
SLIRP-211ENST00000557623 TTC21AQ8NDW8 1320 aa17.47■□□□□ 0.39
SLIRP-211ENST00000557623 RXRBP28702 533 aa17.46■□□□□ 0.39
SLIRP-211ENST00000557623 NUTM2GQ5VZR2 741 aa17.46■□□□□ 0.39
SLIRP-211ENST00000557623 TERF2IPQ9NYB0 399 aa17.46■□□□□ 0.39
SLIRP-211ENST00000557623 TRPC5Q9UL62 973 aaPredicted RBP17.46■□□□□ 0.39
SLIRP-211ENST00000557623 CD163L1Q9NR16 1453 aa17.45■□□□□ 0.38
SLIRP-211ENST00000557623 SLC12A5Q9H2X9 1139 aa17.45■□□□□ 0.38
SLIRP-211ENST00000557623 TTC21BQ7Z4L5 1316 aa17.45■□□□□ 0.38
SLIRP-211ENST00000557623 BCL9LQ86UU0 1499 aa17.44■□□□□ 0.38
SLIRP-211ENST00000557623 USP19O94966 1318 aa17.44■□□□□ 0.38
SLIRP-211ENST00000557623 NLRP6P59044 892 aa17.43■□□□□ 0.38
SLIRP-211ENST00000557623 RBM6P78332 1123 aaKnown RBP17.43■□□□□ 0.38
SLIRP-211ENST00000557623 UNC5CLQ8IV45 518 aa17.43■□□□□ 0.38
SLIRP-211ENST00000557623 ATRNO75882 1429 aa17.43■□□□□ 0.38
SLIRP-211ENST00000557623 CDK12Q9NYV4 1490 aaPredicted RBP17.43■□□□□ 0.38
SLIRP-211ENST00000557623 NRAPQ86VF7 1730 aa17.42■□□□□ 0.38
SLIRP-211ENST00000557623 EDC4Q6P2E9 1401 aaKnown RBP17.42■□□□□ 0.38
SLIRP-211ENST00000557623 FAM83GA6ND36 823 aa17.42■□□□□ 0.38
SLIRP-211ENST00000557623 SOCS7O14512 581 aa17.42■□□□□ 0.38
SLIRP-211ENST00000557623 MKRN4PQ13434 485 aaPredicted RBP17.42■□□□□ 0.38
SLIRP-211ENST00000557623 RBM42Q9BTD8 480 aaKnown RBP17.42■□□□□ 0.38
SLIRP-211ENST00000557623 USP54Q70EL1 1684 aa17.42■□□□□ 0.38
SLIRP-211ENST00000557623 A0A1W2PP64 1363 aa17.41■□□□□ 0.38
SLIRP-211ENST00000557623 PRDM11Q9NQV5 511 aa17.41■□□□□ 0.38
SLIRP-211ENST00000557623 SLIT3O75094 1523 aa17.41■□□□□ 0.38
SLIRP-211ENST00000557623 HSPA5P11021 654 aaKnown RBP17.4■□□□□ 0.38
SLIRP-211ENST00000557623 KIAA0232Q92628 1395 aa17.4■□□□□ 0.38
SLIRP-211ENST00000557623 MYOM1P52179 1685 aa17.39■□□□□ 0.37
SLIRP-211ENST00000557623 GCP02774 474 aa17.39■□□□□ 0.37
SLIRP-211ENST00000557623 CPDO75976 1380 aa17.39■□□□□ 0.37
SLIRP-211ENST00000557623 ANKRD36BQ8N2N9 1353 aa17.39■□□□□ 0.37
SLIRP-211ENST00000557623 ZC3H6P61129 1189 aaKnown RBP17.38■□□□□ 0.37
SLIRP-211ENST00000557623 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.38■□□□□ 0.37
SLIRP-211ENST00000557623 BTG4Q9NY30 223 aa17.38■□□□□ 0.37
SLIRP-211ENST00000557623 KCNH5Q8NCM2 988 aa17.37■□□□□ 0.37
SLIRP-211ENST00000557623 GJD4Q96KN9 370 aaPredicted RBP17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms