RNA–Protein interactions for RNA: ENST00000557511.5

PSEN1-223, Transcript of presenilin 1, human

TSL 5 BASIC

Gene PSEN1, Length 1,230 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PSEN1-223	ENST00000557511	SRPK2	P78362	688 aa	Known RBP	11.77	□□□□□ -0.53
PSEN1-223	ENST00000557511	NBPF8	Q3BBV2	869 aa		11.76	□□□□□ -0.53
PSEN1-223	ENST00000557511	DDX17	Q92841	729 aa	Known RBP	11.76	□□□□□ -0.53
PSEN1-223	ENST00000557511	NUTM2B	A6NNL0	878 aa	Predicted RBP	11.75	□□□□□ -0.53
PSEN1-223	ENST00000557511	NUTM2E	B1AL46	878 aa	Predicted RBP	11.75	□□□□□ -0.53
PSEN1-223	ENST00000557511	SLC24A1	O60721	1099 aa		11.75	□□□□□ -0.53
PSEN1-223	ENST00000557511	NUTM2A	Q8IVF1	878 aa	Predicted RBP	11.75	□□□□□ -0.53
PSEN1-223	ENST00000557511	NGDN	Q8NEJ9	315 aa	Known RBP	11.75	□□□□□ -0.53
PSEN1-223	ENST00000557511	CDK19	Q9BWU1	502 aa		11.75	□□□□□ -0.53
PSEN1-223	ENST00000557511	EVC2	Q86UK5	1308 aa		11.75	□□□□□ -0.53
PSEN1-223	ENST00000557511	GPRASP1	Q5JY77	1395 aa		11.75	□□□□□ -0.53
PSEN1-223	ENST00000557511	ADGRB2	O60241	1585 aa		11.75	□□□□□ -0.53
PSEN1-223	ENST00000557511	TRPM1	Q7Z4N2	1603 aa		11.75	□□□□□ -0.53
PSEN1-223	ENST00000557511	KRT28	Q7Z3Y7	464 aa		11.74	□□□□□ -0.53
PSEN1-223	ENST00000557511	IFNLR1	Q8IU57	520 aa	Predicted RBP	11.74	□□□□□ -0.53
PSEN1-223	ENST00000557511	PMFBP1	Q8TBY8	1022 aa		11.74	□□□□□ -0.53
PSEN1-223	ENST00000557511	NUDT16	Q96DE0	195 aa	Known RBP	11.74	□□□□□ -0.53
PSEN1-223	ENST00000557511	ZRANB1	Q9UGI0	708 aa		11.74	□□□□□ -0.53
PSEN1-223	ENST00000557511	SOS2	Q07890	1332 aa	Predicted RBP	11.74	□□□□□ -0.53
PSEN1-223	ENST00000557511	COL16A1	Q07092	1604 aa	Predicted RBP	11.74	□□□□□ -0.53
PSEN1-223	ENST00000557511	ARHGEF28	Q8N1W1	1705 aa	Known RBP	11.74	□□□□□ -0.53
PSEN1-223	ENST00000557511	FMN2	Q9NZ56	1722 aa		11.74	□□□□□ -0.53
PSEN1-223	ENST00000557511	HAP1	P54257	671 aa	Predicted RBP	11.73	□□□□□ -0.53
PSEN1-223	ENST00000557511	XPC	Q01831	940 aa	Predicted RBP	11.73	□□□□□ -0.53
PSEN1-223	ENST00000557511	KIF1A	Q12756	1690 aa		11.73	□□□□□ -0.53
PSEN1-223	ENST00000557511	MED1	Q15648	1581 aa	Predicted RBP	11.73	□□□□□ -0.53
PSEN1-223	ENST00000557511	LMOD2	Q6P5Q4	547 aa		11.73	□□□□□ -0.53
PSEN1-223	ENST00000557511	RALGAPB	Q86X10	1494 aa		11.73	□□□□□ -0.53
PSEN1-223	ENST00000557511	TSPYL2	Q9H2G4	693 aa	Predicted RBP	11.73	□□□□□ -0.53
PSEN1-223	ENST00000557511	TULP4	Q9NRJ4	1543 aa		11.73	□□□□□ -0.53
PSEN1-223	ENST00000557511	CCDC61	Q9Y6R9	512 aa		11.73	□□□□□ -0.53
PSEN1-223	ENST00000557511	NHSL1	Q5SYE7	1610 aa		11.72	□□□□□ -0.53
PSEN1-223	ENST00000557511	EVX2	Q03828	476 aa		11.72	□□□□□ -0.53
PSEN1-223	ENST00000557511	CABP2	Q9NPB3	220 aa		11.7	□□□□□ -0.54
PSEN1-223	ENST00000557511	PNPLA6	Q8IY17	1366 aa		11.69	□□□□□ -0.54
PSEN1-223	ENST00000557511	PRR36	Q9H6K5	1346 aa		11.69	□□□□□ -0.54
PSEN1-223	ENST00000557511	SPOCK2	Q92563	424 aa		11.69	□□□□□ -0.54
PSEN1-223	ENST00000557511	SHPRH	Q149N8	1683 aa		11.68	□□□□□ -0.54
PSEN1-223	ENST00000557511	ARHGEF10	O15013	1369 aa		11.68	□□□□□ -0.54
PSEN1-223	ENST00000557511	SPATA31A3	Q5VYP0	1347 aa		11.68	□□□□□ -0.54
PSEN1-223	ENST00000557511	ZNF772	Q68DY9	489 aa	Predicted RBP	11.68	□□□□□ -0.54
PSEN1-223	ENST00000557511	SBNO1	A3KN83	1393 aa		11.67	□□□□□ -0.54
PSEN1-223	ENST00000557511	ADAMTS2	O95450	1211 aa		11.67	□□□□□ -0.54
PSEN1-223	ENST00000557511	NUBP1	P53384	320 aa		11.67	□□□□□ -0.54
PSEN1-223	ENST00000557511	RASEF	Q8IZ41	740 aa		11.67	□□□□□ -0.54
PSEN1-223	ENST00000557511	SP7	Q8TDD2	431 aa	Predicted RBP	11.67	□□□□□ -0.54
PSEN1-223	ENST00000557511	FAM212A	Q96EL1	285 aa		11.67	□□□□□ -0.54
PSEN1-223	ENST00000557511	PXDN	Q92626	1479 aa		11.67	□□□□□ -0.54
PSEN1-223	ENST00000557511	QRICH2	Q9H0J4	1663 aa		11.67	□□□□□ -0.54
PSEN1-223	ENST00000557511	ATAD2	Q6PL18	1390 aa		11.67	□□□□□ -0.54
PSEN1-223	ENST00000557511	ACE	P12821	1306 aa		11.66	□□□□□ -0.54
PSEN1-223	ENST00000557511	ATP7B	P35670	1465 aa		11.66	□□□□□ -0.54
PSEN1-223	ENST00000557511	PLEKHG3	A1L390	1219 aa		11.66	□□□□□ -0.54
PSEN1-223	ENST00000557511	DCAF8	Q5TAQ9	597 aa		11.66	□□□□□ -0.54
PSEN1-223	ENST00000557511	NGLY1	Q96IV0	654 aa		11.66	□□□□□ -0.54
PSEN1-223	ENST00000557511	C8orf37	Q96NL8	207 aa		11.66	□□□□□ -0.54
PSEN1-223	ENST00000557511	TNS3	Q68CZ2	1445 aa		11.66	□□□□□ -0.54
PSEN1-223	ENST00000557511	PPIP5K1	Q6PFW1	1433 aa		11.66	□□□□□ -0.54
PSEN1-223	ENST00000557511	ITSN1	Q15811	1721 aa		11.66	□□□□□ -0.54
PSEN1-223	ENST00000557511	SBNO2	Q9Y2G9	1366 aa		11.66	□□□□□ -0.54
PSEN1-223	ENST00000557511	ST20-MTHFS	A0A0A6YYL1	179 aa		11.65	□□□□□ -0.54
PSEN1-223	ENST00000557511	CDCA8	Q53HL2	280 aa		11.65	□□□□□ -0.54
PSEN1-223	ENST00000557511	TMC1	Q8TDI8	760 aa		11.65	□□□□□ -0.54
PSEN1-223	ENST00000557511	CABP1	Q9NZU7	370 aa		11.65	□□□□□ -0.54
PSEN1-223	ENST00000557511	USP47	Q96K76	1375 aa		11.65	□□□□□ -0.55
PSEN1-223	ENST00000557511	TMF1	P82094	1093 aa		11.64	□□□□□ -0.55
PSEN1-223	ENST00000557511	USP32	Q8NFA0	1604 aa		11.64	□□□□□ -0.55
PSEN1-223	ENST00000557511	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	11.63	□□□□□ -0.55
PSEN1-223	ENST00000557511	RGPD8	O14715	1765 aa	Predicted RBP	11.63	□□□□□ -0.55
PSEN1-223	ENST00000557511	POLR3A	O14802	1390 aa	Predicted RBP	11.63	□□□□□ -0.55
PSEN1-223	ENST00000557511	BRD4	O60885	1362 aa	Predicted RBP	11.63	□□□□□ -0.55
PSEN1-223	ENST00000557511	AFF2	P51816	1311 aa		11.62	□□□□□ -0.55
PSEN1-223	ENST00000557511	LRP6	O75581	1613 aa		11.62	□□□□□ -0.55
PSEN1-223	ENST00000557511	EIF4G2	P78344	907 aa	Known RBP eCLIP	11.62	□□□□□ -0.55
PSEN1-223	ENST00000557511	ABTB2	Q8N961	1025 aa		11.62	□□□□□ -0.55
PSEN1-223	ENST00000557511	PUS7	Q96PZ0	661 aa	Known RBP	11.62	□□□□□ -0.55
PSEN1-223	ENST00000557511	TERF2IP	Q9NYB0	399 aa		11.62	□□□□□ -0.55
PSEN1-223	ENST00000557511	NLRP13	Q86W25	1043 aa		11.61	□□□□□ -0.55
PSEN1-223	ENST00000557511	CABLES1	Q8TDN4	633 aa		11.6	□□□□□ -0.55
PSEN1-223	ENST00000557511	USP21	Q9UK80	565 aa		11.6	□□□□□ -0.55
PSEN1-223	ENST00000557511	COL22A1	Q8NFW1	1626 aa	Predicted RBP	11.6	□□□□□ -0.55
PSEN1-223	ENST00000557511	NINL	Q9Y2I6	1382 aa		11.59	□□□□□ -0.55
PSEN1-223	ENST00000557511	RXRB	P28702	533 aa		11.59	□□□□□ -0.55
PSEN1-223	ENST00000557511	ZNF579	Q8NAF0	562 aa	Known RBP	11.59	□□□□□ -0.55
PSEN1-223	ENST00000557511	CIZ1	Q9ULV3	898 aa	Predicted RBP	11.59	□□□□□ -0.55
PSEN1-223	ENST00000557511	KTN1	Q86UP2	1357 aa	Known RBP	11.58	□□□□□ -0.56
PSEN1-223	ENST00000557511	GSE1	Q14687	1217 aa		11.58	□□□□□ -0.56
PSEN1-223	ENST00000557511	NUTM2G	Q5VZR2	741 aa		11.58	□□□□□ -0.56
PSEN1-223	ENST00000557511	TESK2	Q96S53	571 aa		11.58	□□□□□ -0.56
PSEN1-223	ENST00000557511	QTRT2	Q9H974	415 aa	Known RBP	11.58	□□□□□ -0.56
PSEN1-223	ENST00000557511	TRPC5	Q9UL62	973 aa	Predicted RBP	11.58	□□□□□ -0.56
PSEN1-223	ENST00000557511	TOPAZ1	Q8N9V7	1692 aa		11.58	□□□□□ -0.56
PSEN1-223	ENST00000557511	NLRP6	P59044	892 aa		11.57	□□□□□ -0.56
PSEN1-223	ENST00000557511	POTEA	Q6S8J7	498 aa		11.57	□□□□□ -0.56
PSEN1-223	ENST00000557511	ILDR2	Q71H61	639 aa		11.57	□□□□□ -0.56
PSEN1-223	ENST00000557511	PHF12	Q96QT6	1004 aa		11.57	□□□□□ -0.56
PSEN1-223	ENST00000557511	POLR3GL	Q9BT43	218 aa		11.57	□□□□□ -0.56
PSEN1-223	ENST00000557511	RGS17	Q9UGC6	210 aa	Predicted RBP	11.57	□□□□□ -0.56
PSEN1-223	ENST00000557511	USP6	P35125	1406 aa		11.57	□□□□□ -0.56
PSEN1-223	ENST00000557511	TTC21A	Q8NDW8	1320 aa		11.57	□□□□□ -0.56

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