RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 USP6P35125 1406 aa18.99■□□□□ 0.63
SHMT2-228ENST00000557302 ADAMTS2O95450 1211 aa18.98■□□□□ 0.63
SHMT2-228ENST00000557302 NINLQ9Y2I6 1382 aa18.97■□□□□ 0.63
SHMT2-228ENST00000557302 HAP1P54257 671 aaPredicted RBP18.97■□□□□ 0.63
SHMT2-228ENST00000557302 SLC12A5Q9H2X9 1139 aa18.97■□□□□ 0.63
SHMT2-228ENST00000557302 RGS17Q9UGC6 210 aaPredicted RBP18.97■□□□□ 0.63
SHMT2-228ENST00000557302 ALS2Q96Q42 1657 aa18.97■□□□□ 0.63
SHMT2-228ENST00000557302 PLEKHG5O94827 1062 aa18.96■□□□□ 0.63
SHMT2-228ENST00000557302 ADRA2BP18089 450 aa18.96■□□□□ 0.63
SHMT2-228ENST00000557302 HDGFL2Q7Z4V5 671 aaPredicted RBP18.96■□□□□ 0.63
SHMT2-228ENST00000557302 CPSF1Q10570 1443 aaKnown RBP18.96■□□□□ 0.63
SHMT2-228ENST00000557302 KTN1Q86UP2 1357 aaKnown RBP18.95■□□□□ 0.62
SHMT2-228ENST00000557302 CABLES1Q8TDN4 633 aa18.95■□□□□ 0.62
SHMT2-228ENST00000557302 TERF2IPQ9NYB0 399 aa18.95■□□□□ 0.62
SHMT2-228ENST00000557302 ABTB2Q8N961 1025 aa18.94■□□□□ 0.62
SHMT2-228ENST00000557302 C8orf37Q96NL8 207 aa18.94■□□□□ 0.62
SHMT2-228ENST00000557302 SSH2Q76I76 1423 aa18.93■□□□□ 0.62
SHMT2-228ENST00000557302 CD163L1Q9NR16 1453 aa18.93■□□□□ 0.62
SHMT2-228ENST00000557302 NUTM2GQ5VZR2 741 aa18.93■□□□□ 0.62
SHMT2-228ENST00000557302 AKAP12Q02952 1782 aa18.92■□□□□ 0.62
SHMT2-228ENST00000557302 TTC21BQ7Z4L5 1316 aa18.92■□□□□ 0.62
SHMT2-228ENST00000557302 A0A1W2PP64 1363 aa18.92■□□□□ 0.62
SHMT2-228ENST00000557302 NGLY1Q96IV0 654 aa18.91■□□□□ 0.62
SHMT2-228ENST00000557302 NLRP13Q86W25 1043 aa18.9■□□□□ 0.62
SHMT2-228ENST00000557302 AFF2P51816 1311 aa18.9■□□□□ 0.62
SHMT2-228ENST00000557302 TTC21AQ8NDW8 1320 aa18.9■□□□□ 0.62
SHMT2-228ENST00000557302 ZNF772Q68DY9 489 aaPredicted RBP18.89■□□□□ 0.61
SHMT2-228ENST00000557302 POLR3GLQ9BT43 218 aa18.89■□□□□ 0.61
SHMT2-228ENST00000557302 ANKRD36BQ8N2N9 1353 aa18.89■□□□□ 0.61
SHMT2-228ENST00000557302 MON2Q7Z3U7 1717 aa18.88■□□□□ 0.61
SHMT2-228ENST00000557302 ABCA3Q99758 1704 aa18.88■□□□□ 0.61
SHMT2-228ENST00000557302 NLRP6P59044 892 aa18.88■□□□□ 0.61
SHMT2-228ENST00000557302 EDC4Q6P2E9 1401 aaKnown RBP18.88■□□□□ 0.61
SHMT2-228ENST00000557302 NRKQ7Z2Y5 1582 aa18.88■□□□□ 0.61
SHMT2-228ENST00000557302 USP19O94966 1318 aa18.87■□□□□ 0.61
SHMT2-228ENST00000557302 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.87■□□□□ 0.61
SHMT2-228ENST00000557302 POTEAQ6S8J7 498 aa18.85■□□□□ 0.61
SHMT2-228ENST00000557302 FNBP4Q8N3X1 1017 aaPredicted RBP18.85■□□□□ 0.61
SHMT2-228ENST00000557302 MARF1Q9Y4F3 1742 aaKnown RBP18.85■□□□□ 0.61
SHMT2-228ENST00000557302 CRYBG1Q9Y4K1 1723 aa18.85■□□□□ 0.61
SHMT2-228ENST00000557302 PIK3C2AO00443 1686 aa18.85■□□□□ 0.61
SHMT2-228ENST00000557302 PIAS4Q8N2W9 510 aaPredicted RBP18.84■□□□□ 0.61
SHMT2-228ENST00000557302 USP21Q9UK80 565 aa18.84■□□□□ 0.61
SHMT2-228ENST00000557302 PHRF1Q9P1Y6 1649 aaKnown RBP18.83■□□□□ 0.61
SHMT2-228ENST00000557302 NME9Q86XW9 330 aa18.83■□□□□ 0.6
SHMT2-228ENST00000557302 MYOM1P52179 1685 aa18.82■□□□□ 0.6
SHMT2-228ENST00000557302 C11orf95C9JLR9 678 aaPredicted RBP18.82■□□□□ 0.6
SHMT2-228ENST00000557302 GCP02774 474 aa18.82■□□□□ 0.6
SHMT2-228ENST00000557302 PRDM11Q9NQV5 511 aa18.82■□□□□ 0.6
SHMT2-228ENST00000557302 USP31Q70CQ4 1352 aa18.81■□□□□ 0.6
SHMT2-228ENST00000557302 KIAA0232Q92628 1395 aa18.81■□□□□ 0.6
SHMT2-228ENST00000557302 SLIT2O94813 1529 aa18.81■□□□□ 0.6
SHMT2-228ENST00000557302 FAM83GA6ND36 823 aa18.81■□□□□ 0.6
SHMT2-228ENST00000557302 ZC3H6P61129 1189 aaKnown RBP18.81■□□□□ 0.6
SHMT2-228ENST00000557302 SLIT3O75094 1523 aa18.8■□□□□ 0.6
SHMT2-228ENST00000557302 KIF7Q2M1P5 1343 aa18.79■□□□□ 0.6
SHMT2-228ENST00000557302 BCL9LQ86UU0 1499 aa18.79■□□□□ 0.6
SHMT2-228ENST00000557302 ZEB1P37275 1124 aaPredicted RBP18.79■□□□□ 0.6
SHMT2-228ENST00000557302 UNC5CLQ8IV45 518 aa18.79■□□□□ 0.6
SHMT2-228ENST00000557302 KCNH5Q8NCM2 988 aa18.79■□□□□ 0.6
SHMT2-228ENST00000557302 QTRT2Q9H974 415 aaKnown RBP18.79■□□□□ 0.6
SHMT2-228ENST00000557302 ZRANB1Q9UGI0 708 aa18.79■□□□□ 0.6
SHMT2-228ENST00000557302 CPDO75976 1380 aa18.79■□□□□ 0.6
SHMT2-228ENST00000557302 TRPC5Q9UL62 973 aaPredicted RBP18.78■□□□□ 0.6
SHMT2-228ENST00000557302 SOX12O15370 315 aa18.77■□□□□ 0.6
SHMT2-228ENST00000557302 CHRNA2Q15822 529 aa18.77■□□□□ 0.6
SHMT2-228ENST00000557302 BTG4Q9NY30 223 aa18.77■□□□□ 0.6
SHMT2-228ENST00000557302 COL14A1Q05707 1796 aaKnown RBP18.77■□□□□ 0.6
SHMT2-228ENST00000557302 ATRNO75882 1429 aa18.76■□□□□ 0.59
SHMT2-228ENST00000557302 NSD3Q9BZ95 1437 aa18.76■□□□□ 0.59
SHMT2-228ENST00000557302 COG3Q96JB2 828 aa18.76■□□□□ 0.59
SHMT2-228ENST00000557302 CARD14Q9BXL6 1004 aa18.76■□□□□ 0.59
SHMT2-228ENST00000557302 PLCH1Q4KWH8 1693 aa18.76■□□□□ 0.59
SHMT2-228ENST00000557302 OVOS2A0A0J9YW53 1432 aa18.75■□□□□ 0.59
SHMT2-228ENST00000557302 OVOS2Q6IE36 1432 aa18.75■□□□□ 0.59
SHMT2-228ENST00000557302 ZBTB7CA1YPR0 619 aa18.75■□□□□ 0.59
SHMT2-228ENST00000557302 RXRBP28702 533 aa18.75■□□□□ 0.59
SHMT2-228ENST00000557302 PANK3Q9H999 370 aa18.75■□□□□ 0.59
SHMT2-228ENST00000557302 USP54Q70EL1 1684 aa18.75■□□□□ 0.59
SHMT2-228ENST00000557302 NWD2Q9ULI1 1742 aa18.74■□□□□ 0.59
SHMT2-228ENST00000557302 RBM6P78332 1123 aaKnown RBP18.74■□□□□ 0.59
SHMT2-228ENST00000557302 CCDC7Q96M83 1385 aa18.73■□□□□ 0.59
SHMT2-228ENST00000557302 FYB1O15117 783 aa18.73■□□□□ 0.59
SHMT2-228ENST00000557302 MSH5O43196 834 aa18.73■□□□□ 0.59
SHMT2-228ENST00000557302 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.73■□□□□ 0.59
SHMT2-228ENST00000557302 NFAT5O94916 1531 aa18.73■□□□□ 0.59
SHMT2-228ENST00000557302 CGNL1Q0VF96 1302 aa18.73■□□□□ 0.59
SHMT2-228ENST00000557302 VPS72Q15906 364 aa18.72■□□□□ 0.59
SHMT2-228ENST00000557302 ARHGEF25Q86VW2 580 aa18.72■□□□□ 0.59
SHMT2-228ENST00000557302 GGNBP2Q9H3C7 697 aa18.72■□□□□ 0.59
SHMT2-228ENST00000557302 WASHC2AQ641Q2 1341 aa18.72■□□□□ 0.59
SHMT2-228ENST00000557302 AATKQ6ZMQ8 1374 aa18.71■□□□□ 0.59
SHMT2-228ENST00000557302 GJD4Q96KN9 370 aaPredicted RBP18.7■□□□□ 0.58
SHMT2-228ENST00000557302 CCDC9Q9Y3X0 531 aaKnown RBP18.7■□□□□ 0.58
SHMT2-228ENST00000557302 NRAPQ86VF7 1730 aa18.69■□□□□ 0.58
SHMT2-228ENST00000557302 STRN4Q9NRL3 753 aa18.69■□□□□ 0.58
SHMT2-228ENST00000557302 EVA1CP58658 441 aa18.68■□□□□ 0.58
SHMT2-228ENST00000557302 CDK12Q9NYV4 1490 aaPredicted RBP18.68■□□□□ 0.58
SHMT2-228ENST00000557302 LMO7Q8WWI1 1683 aa18.68■□□□□ 0.58
SHMT2-228ENST00000557302 CAMTA1Q9Y6Y1 1673 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms