RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 SPATA31A3Q5VYP0 1347 aa17.72■□□□□ 0.43
SHMT2-227ENST00000557269 NRKQ7Z2Y5 1582 aa17.72■□□□□ 0.43
SHMT2-227ENST00000557269 SBNO1A3KN83 1393 aa17.72■□□□□ 0.43
SHMT2-227ENST00000557269 PAK3O75914 559 aaPredicted RBP17.72■□□□□ 0.43
SHMT2-227ENST00000557269 TTC21BQ7Z4L5 1316 aa17.72■□□□□ 0.43
SHMT2-227ENST00000557269 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.71■□□□□ 0.43
SHMT2-227ENST00000557269 ILDR1Q86SU0 546 aaPredicted RBP17.7■□□□□ 0.42
SHMT2-227ENST00000557269 LRRC59Q96AG4 307 aaKnown RBP17.7■□□□□ 0.42
SHMT2-227ENST00000557269 NUTM2GQ5VZR2 741 aa17.69■□□□□ 0.42
SHMT2-227ENST00000557269 ZRANB1Q9UGI0 708 aa17.69■□□□□ 0.42
SHMT2-227ENST00000557269 TNS3Q68CZ2 1445 aa17.69■□□□□ 0.42
SHMT2-227ENST00000557269 EDC4Q6P2E9 1401 aaKnown RBP17.69■□□□□ 0.42
SHMT2-227ENST00000557269 NSD3Q9BZ95 1437 aa17.69■□□□□ 0.42
SHMT2-227ENST00000557269 ALS2Q96Q42 1657 aa17.68■□□□□ 0.42
SHMT2-227ENST00000557269 PER1O15534 1290 aaPredicted RBP17.68■□□□□ 0.42
SHMT2-227ENST00000557269 DDX10Q13206 875 aaKnown RBP17.68■□□□□ 0.42
SHMT2-227ENST00000557269 LMOD2Q6P5Q4 547 aa17.68■□□□□ 0.42
SHMT2-227ENST00000557269 NME9Q86XW9 330 aa17.68■□□□□ 0.42
SHMT2-227ENST00000557269 BRD4O60885 1362 aaPredicted RBP17.67■□□□□ 0.42
SHMT2-227ENST00000557269 PNPLA6Q8IY17 1366 aa17.67■□□□□ 0.42
SHMT2-227ENST00000557269 PLEKHG5O94827 1062 aa17.67■□□□□ 0.42
SHMT2-227ENST00000557269 ABTB2Q8N961 1025 aa17.66■□□□□ 0.42
SHMT2-227ENST00000557269 PIK3C2AO00443 1686 aa17.66■□□□□ 0.42
SHMT2-227ENST00000557269 TTC21AQ8NDW8 1320 aa17.66■□□□□ 0.42
SHMT2-227ENST00000557269 FYB1O15117 783 aa17.65■□□□□ 0.42
SHMT2-227ENST00000557269 CABLES1Q8TDN4 633 aa17.65■□□□□ 0.42
SHMT2-227ENST00000557269 JCADQ9P266 1359 aa17.64■□□□□ 0.41
SHMT2-227ENST00000557269 GGNBP2Q9H3C7 697 aa17.63■□□□□ 0.41
SHMT2-227ENST00000557269 ARHGEF10O15013 1369 aa17.63■□□□□ 0.41
SHMT2-227ENST00000557269 MED1Q15648 1581 aaPredicted RBP17.62■□□□□ 0.41
SHMT2-227ENST00000557269 MARF1Q9Y4F3 1742 aaKnown RBP17.62■□□□□ 0.41
SHMT2-227ENST00000557269 NLRP6P59044 892 aa17.62■□□□□ 0.41
SHMT2-227ENST00000557269 SHPRHQ149N8 1683 aa17.61■□□□□ 0.41
SHMT2-227ENST00000557269 AMER1Q5JTC6 1135 aaPredicted RBP17.61■□□□□ 0.41
SHMT2-227ENST00000557269 KNSTRNQ9Y448 316 aa17.61■□□□□ 0.41
SHMT2-227ENST00000557269 USP31Q70CQ4 1352 aa17.61■□□□□ 0.41
SHMT2-227ENST00000557269 COL22A1Q8NFW1 1626 aaPredicted RBP17.61■□□□□ 0.41
SHMT2-227ENST00000557269 NLRP13Q86W25 1043 aa17.6■□□□□ 0.41
SHMT2-227ENST00000557269 CGNL1Q0VF96 1302 aa17.6■□□□□ 0.41
SHMT2-227ENST00000557269 OVOS2A0A0J9YW53 1432 aa17.59■□□□□ 0.41
SHMT2-227ENST00000557269 OVOS2Q6IE36 1432 aa17.59■□□□□ 0.41
SHMT2-227ENST00000557269 USP19O94966 1318 aa17.59■□□□□ 0.41
SHMT2-227ENST00000557269 KIF20BQ96Q89 1820 aa17.58■□□□□ 0.41
SHMT2-227ENST00000557269 CRYBG1Q9Y4K1 1723 aa17.58■□□□□ 0.41
SHMT2-227ENST00000557269 NUTM2BA6NNL0 878 aaPredicted RBP17.58■□□□□ 0.4
SHMT2-227ENST00000557269 NUTM2EB1AL46 878 aaPredicted RBP17.58■□□□□ 0.4
SHMT2-227ENST00000557269 NUTM2AQ8IVF1 878 aaPredicted RBP17.58■□□□□ 0.4
SHMT2-227ENST00000557269 FBLN1P23142 703 aa17.57■□□□□ 0.4
SHMT2-227ENST00000557269 CNGB1Q14028 1251 aaPredicted RBP17.57■□□□□ 0.4
SHMT2-227ENST00000557269 CC2D1BQ5T0F9 858 aaKnown RBP17.57■□□□□ 0.4
SHMT2-227ENST00000557269 USP54Q70EL1 1684 aa17.57■□□□□ 0.4
SHMT2-227ENST00000557269 ABCA3Q99758 1704 aa17.56■□□□□ 0.4
SHMT2-227ENST00000557269 SOX12O15370 315 aa17.56■□□□□ 0.4
SHMT2-227ENST00000557269 COG3Q96JB2 828 aa17.56■□□□□ 0.4
SHMT2-227ENST00000557269 LRP6O75581 1613 aa17.56■□□□□ 0.4
SHMT2-227ENST00000557269 SLIT3O75094 1523 aa17.56■□□□□ 0.4
SHMT2-227ENST00000557269 PHRF1Q9P1Y6 1649 aaKnown RBP17.55■□□□□ 0.4
SHMT2-227ENST00000557269 SPATA31A6Q5VVP1 1343 aa17.55■□□□□ 0.4
SHMT2-227ENST00000557269 GCP02774 474 aa17.55■□□□□ 0.4
SHMT2-227ENST00000557269 ADAMTS2O95450 1211 aa17.53■□□□□ 0.4
SHMT2-227ENST00000557269 ZC3H6P61129 1189 aaKnown RBP17.53■□□□□ 0.4
SHMT2-227ENST00000557269 NPC1L1Q9UHC9 1359 aa17.53■□□□□ 0.4
SHMT2-227ENST00000557269 HAP1P54257 671 aaPredicted RBP17.52■□□□□ 0.4
SHMT2-227ENST00000557269 NSD2O96028 1365 aa17.52■□□□□ 0.39
SHMT2-227ENST00000557269 NFAT5O94916 1531 aa17.52■□□□□ 0.39
SHMT2-227ENST00000557269 TNNT2P45379 298 aaPredicted RBP17.51■□□□□ 0.39
SHMT2-227ENST00000557269 MORC1Q86VD1 984 aa17.51■□□□□ 0.39
SHMT2-227ENST00000557269 ANKRD26Q9UPS8 1709 aa17.51■□□□□ 0.39
SHMT2-227ENST00000557269 KCNH5Q8NCM2 988 aa17.5■□□□□ 0.39
SHMT2-227ENST00000557269 KIAA0232Q92628 1395 aa17.5■□□□□ 0.39
SHMT2-227ENST00000557269 FAM83GA6ND36 823 aa17.49■□□□□ 0.39
SHMT2-227ENST00000557269 RRS1Q15050 365 aaKnown RBP17.48■□□□□ 0.39
SHMT2-227ENST00000557269 CHRNA2Q15822 529 aa17.48■□□□□ 0.39
SHMT2-227ENST00000557269 ARHGEF25Q86VW2 580 aa17.48■□□□□ 0.39
SHMT2-227ENST00000557269 ZBTB7CA1YPR0 619 aa17.47■□□□□ 0.39
SHMT2-227ENST00000557269 CPDO75976 1380 aa17.47■□□□□ 0.39
SHMT2-227ENST00000557269 MAP3K19Q56UN5 1328 aa17.46■□□□□ 0.38
SHMT2-227ENST00000557269 C8orf37Q96NL8 207 aa17.45■□□□□ 0.38
SHMT2-227ENST00000557269 PRDM11Q9NQV5 511 aa17.45■□□□□ 0.38
SHMT2-227ENST00000557269 EMILIN1Q9Y6C2 1016 aa17.45■□□□□ 0.38
SHMT2-227ENST00000557269 AATKQ6ZMQ8 1374 aa17.44■□□□□ 0.38
SHMT2-227ENST00000557269 MEX3CQ5U5Q3 659 aaKnown RBP17.44■□□□□ 0.38
SHMT2-227ENST00000557269 POLKQ9UBT6 870 aa17.44■□□□□ 0.38
SHMT2-227ENST00000557269 AXIN2Q9Y2T1 843 aa17.44■□□□□ 0.38
SHMT2-227ENST00000557269 COL18A1P39060 1754 aa17.43■□□□□ 0.38
SHMT2-227ENST00000557269 PARD3Q8TEW0 1356 aa17.43■□□□□ 0.38
SHMT2-227ENST00000557269 PEAK1Q9H792 1746 aa17.43■□□□□ 0.38
SHMT2-227ENST00000557269 LTN1O94822 1766 aa17.43■□□□□ 0.38
SHMT2-227ENST00000557269 NGLY1Q96IV0 654 aa17.42■□□□□ 0.38
SHMT2-227ENST00000557269 CAMTA1Q9Y6Y1 1673 aa17.42■□□□□ 0.38
SHMT2-227ENST00000557269 COL14A1Q05707 1796 aaKnown RBP17.41■□□□□ 0.38
SHMT2-227ENST00000557269 PPM1GO15355 546 aaPredicted RBP17.41■□□□□ 0.38
SHMT2-227ENST00000557269 PPP2R1AP30153 589 aa17.41■□□□□ 0.38
SHMT2-227ENST00000557269 LMO7Q8WWI1 1683 aa17.41■□□□□ 0.38
SHMT2-227ENST00000557269 MAP2P11137 1827 aaKnown RBP17.4■□□□□ 0.38
SHMT2-227ENST00000557269 HOXC9P31274 260 aa17.4■□□□□ 0.38
SHMT2-227ENST00000557269 FNBP4Q8N3X1 1017 aaPredicted RBP17.4■□□□□ 0.38
SHMT2-227ENST00000557269 IP6K1Q92551 441 aa17.4■□□□□ 0.38
SHMT2-227ENST00000557269 PRKRIP1Q9H875 184 aaPredicted RBP17.4■□□□□ 0.38
SHMT2-227ENST00000557269 BTG4Q9NY30 223 aa17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms