RNA–Protein interactions for RNA: ENST00000557266.5

RCCD1-208, Transcript of RCC1 domain containing 1, humanhuman

TSL 1 (best)

Gene RCCD1, Length 2,110 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RCCD1-208ENST00000557266 TNNQ9UQP3 1299 aa29.12■■■□□ 2.25
RCCD1-208ENST00000557266 FER1L4A9Z1Z3 1794 aa29.11■■■□□ 2.25
RCCD1-208ENST00000557266 CDK19Q9BWU1 502 aa29.11■■■□□ 2.25
RCCD1-208ENST00000557266 U2SURPO15042 1029 aaKnown RBP29.11■■■□□ 2.25
RCCD1-208ENST00000557266 RTL5Q5HYW3 569 aaPredicted RBP29.09■■■□□ 2.25
RCCD1-208ENST00000557266 LAS1LQ9Y4W2 734 aaKnown RBP29.09■■■□□ 2.25
RCCD1-208ENST00000557266 A2ML1A8K2U0 1454 aa29.08■■■□□ 2.25
RCCD1-208ENST00000557266 HDGFL2Q7Z4V5 671 aaPredicted RBP29.08■■■□□ 2.25
RCCD1-208ENST00000557266 AAMPQ13685 434 aa29.07■■■□□ 2.24
RCCD1-208ENST00000557266 TMPOP42166 694 aaKnown RBP29.06■■■□□ 2.24
RCCD1-208ENST00000557266 CABP1Q9NZU7 370 aa29.06■■■□□ 2.24
RCCD1-208ENST00000557266 TRIM35Q9UPQ4 493 aa29.05■■■□□ 2.24
RCCD1-208ENST00000557266 DLC1Q96QB1 1528 aa29.05■■■□□ 2.24
RCCD1-208ENST00000557266 BCL11AQ9H165 835 aa29.05■■■□□ 2.24
RCCD1-208ENST00000557266 PNPLA6Q8IY17 1366 aa29.04■■■□□ 2.24
RCCD1-208ENST00000557266 TSR2Q969E8 191 aaKnown RBP29.04■■■□□ 2.24
RCCD1-208ENST00000557266 PCDHB15Q9Y5E8 787 aa29.03■■■□□ 2.24
RCCD1-208ENST00000557266 C3P01024 1663 aa29.02■■■□□ 2.24
RCCD1-208ENST00000557266 RIMS2Q9UQ26 1411 aa29.02■■■□□ 2.24
RCCD1-208ENST00000557266 MAPK8IP3Q9UPT6 1336 aa29.02■■■□□ 2.24
RCCD1-208ENST00000557266 CT47B1P0C2W7 299 aaPredicted RBP29.02■■■□□ 2.24
RCCD1-208ENST00000557266 SETD1AO15047 1707 aaKnown RBP29.01■■■□□ 2.23
RCCD1-208ENST00000557266 KIF20BQ96Q89 1820 aa29.01■■■□□ 2.23
RCCD1-208ENST00000557266 PMFBP1Q8TBY8 1022 aa29.01■■■□□ 2.23
RCCD1-208ENST00000557266 WAPLQ7Z5K2 1190 aa29■■■□□ 2.23
RCCD1-208ENST00000557266 DIAPH1O60610 1272 aaKnown RBP29■■■□□ 2.23
RCCD1-208ENST00000557266 PPM1GO15355 546 aaPredicted RBP28.98■■■□□ 2.23
RCCD1-208ENST00000557266 TNRQ92752 1358 aa28.98■■■□□ 2.23
RCCD1-208ENST00000557266 EXOSC9Q06265 439 aaKnown RBP28.97■■■□□ 2.23
RCCD1-208ENST00000557266 ATP7BP35670 1465 aa28.97■■■□□ 2.23
RCCD1-208ENST00000557266 SLC4A3P48751 1232 aa28.97■■■□□ 2.23
RCCD1-208ENST00000557266 IL16Q14005 1332 aa28.97■■■□□ 2.23
RCCD1-208ENST00000557266 VIRMAQ69YN4 1812 aaKnown RBP28.97■■■□□ 2.23
RCCD1-208ENST00000557266 NEFMP07197 916 aa28.96■■■□□ 2.23
RCCD1-208ENST00000557266 MVPQ14764 893 aaKnown RBP28.96■■■□□ 2.23
RCCD1-208ENST00000557266 ZKSCAN2Q63HK3 967 aa28.96■■■□□ 2.23
RCCD1-208ENST00000557266 USP35Q9P2H5 1018 aa28.94■■■□□ 2.22
RCCD1-208ENST00000557266 CDC42BPGQ6DT37 1551 aa28.94■■■□□ 2.22
RCCD1-208ENST00000557266 RIPK4P57078 832 aa28.94■■■□□ 2.22
RCCD1-208ENST00000557266 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.93■■■□□ 2.22
RCCD1-208ENST00000557266 DZIP1LQ8IYY4 767 aaKnown RBP28.93■■■□□ 2.22
RCCD1-208ENST00000557266 SMC4Q9NTJ3 1288 aa28.93■■■□□ 2.22
RCCD1-208ENST00000557266 NRXN3Q9Y4C0 1643 aa28.91■■■□□ 2.22
RCCD1-208ENST00000557266 USP19O94966 1318 aa28.91■■■□□ 2.22
RCCD1-208ENST00000557266 LRRC7Q96NW7 1537 aa28.91■■■□□ 2.22
RCCD1-208ENST00000557266 FTSJ3Q8IY81 847 aaKnown RBP28.91■■■□□ 2.22
RCCD1-208ENST00000557266 SSH1Q8WYL5 1049 aa28.91■■■□□ 2.22
RCCD1-208ENST00000557266 PNNQ9H307 717 aaKnown RBP28.9■■■□□ 2.22
RCCD1-208ENST00000557266 POLKQ9UBT6 870 aa28.9■■■□□ 2.22
RCCD1-208ENST00000557266 FBLN1P23142 703 aa28.9■■■□□ 2.22
RCCD1-208ENST00000557266 RWDD1Q9H446 243 aaPredicted RBP28.9■■■□□ 2.22
RCCD1-208ENST00000557266 ADAMTSL3P82987 1691 aa28.89■■■□□ 2.22
RCCD1-208ENST00000557266 DAXXQ9UER7 740 aaPredicted RBP28.89■■■□□ 2.22
RCCD1-208ENST00000557266 FCHSD2O94868 740 aa28.88■■■□□ 2.21
RCCD1-208ENST00000557266 PDZRN3Q9UPQ7 1066 aa28.88■■■□□ 2.21
RCCD1-208ENST00000557266 UBR1Q8IWV7 1749 aa28.88■■■□□ 2.21
RCCD1-208ENST00000557266 TRIM27P14373 513 aa28.88■■■□□ 2.21
RCCD1-208ENST00000557266 RIMS1Q86UR5 1692 aaKnown RBP28.87■■■□□ 2.21
RCCD1-208ENST00000557266 CEBPAP49715 358 aaPredicted RBP28.87■■■□□ 2.21
RCCD1-208ENST00000557266 METP08581 1390 aa28.87■■■□□ 2.21
RCCD1-208ENST00000557266 SEC24BO95487 1268 aa28.87■■■□□ 2.21
RCCD1-208ENST00000557266 CPSF1Q10570 1443 aaKnown RBP28.87■■■□□ 2.21
RCCD1-208ENST00000557266 FAM135BQ49AJ0 1406 aa28.87■■■□□ 2.21
RCCD1-208ENST00000557266 RSPH6AQ9H0K4 717 aa28.87■■■□□ 2.21
RCCD1-208ENST00000557266 WASLO00401 505 aaPredicted RBP28.85■■■□□ 2.21
RCCD1-208ENST00000557266 PPIP5K1Q6PFW1 1433 aa28.84■■■□□ 2.21
RCCD1-208ENST00000557266 PRKAR2BP31323 418 aa28.84■■■□□ 2.21
RCCD1-208ENST00000557266 ATF7IPQ6VMQ6 1270 aa28.84■■■□□ 2.21
RCCD1-208ENST00000557266 EDC4Q6P2E9 1401 aaKnown RBP28.83■■■□□ 2.21
RCCD1-208ENST00000557266 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.82■■■□□ 2.2
RCCD1-208ENST00000557266 NOB1Q9ULX3 412 aaKnown RBP28.82■■■□□ 2.2
RCCD1-208ENST00000557266 TXNDC2Q86VQ3 553 aa28.79■■■□□ 2.2
RCCD1-208ENST00000557266 NME9Q86XW9 330 aa28.79■■■□□ 2.2
RCCD1-208ENST00000557266 ITPRIPQ8IWB1 547 aa28.79■■■□□ 2.2
RCCD1-208ENST00000557266 DDX19BQ9UMR2 479 aa28.79■■■□□ 2.2
RCCD1-208ENST00000557266 EMILIN1Q9Y6C2 1016 aa28.79■■■□□ 2.2
RCCD1-208ENST00000557266 PHACTR3Q96KR7 559 aa28.77■■■□□ 2.2
RCCD1-208ENST00000557266 MAP2P11137 1827 aaKnown RBP28.77■■■□□ 2.2
RCCD1-208ENST00000557266 TECPR2O15040 1411 aa28.76■■■□□ 2.2
RCCD1-208ENST00000557266 NFKBIBQ15653 356 aa28.76■■■□□ 2.2
RCCD1-208ENST00000557266 KIF16BQ96L93 1317 aa28.76■■■□□ 2.2
RCCD1-208ENST00000557266 HMOX1P09601 288 aa28.76■■■□□ 2.19
RCCD1-208ENST00000557266 HDAC1Q13547 482 aaPredicted RBP28.76■■■□□ 2.19
RCCD1-208ENST00000557266 ZRANB1Q9UGI0 708 aa28.76■■■□□ 2.19
RCCD1-208ENST00000557266 CDK12Q9NYV4 1490 aaPredicted RBP28.75■■■□□ 2.19
RCCD1-208ENST00000557266 NFE2L2Q16236 605 aa28.75■■■□□ 2.19
RCCD1-208ENST00000557266 TMEM57Q8N5G2 664 aa28.75■■■□□ 2.19
RCCD1-208ENST00000557266 NUDT16Q96DE0 195 aaKnown RBP28.75■■■□□ 2.19
RCCD1-208ENST00000557266 KNDC1Q76NI1 1749 aa28.75■■■□□ 2.19
RCCD1-208ENST00000557266 IL13P35225 146 aa28.75■■■□□ 2.19
RCCD1-208ENST00000557266 ALDH1L2Q3SY69 923 aa28.75■■■□□ 2.19
RCCD1-208ENST00000557266 AATKQ6ZMQ8 1374 aa28.74■■■□□ 2.19
RCCD1-208ENST00000557266 NCKAP5LQ9HCH0 1330 aa28.74■■■□□ 2.19
RCCD1-208ENST00000557266 TMEM2Q9UHN6 1383 aa28.73■■■□□ 2.19
RCCD1-208ENST00000557266 CPS1P31327 1500 aa28.73■■■□□ 2.19
RCCD1-208ENST00000557266 SIRT1Q96EB6 747 aa28.73■■■□□ 2.19
RCCD1-208ENST00000557266 PLPPR3Q6T4P5 718 aa28.72■■■□□ 2.19
RCCD1-208ENST00000557266 IPO8O15397 1037 aaKnown RBP28.72■■■□□ 2.19
RCCD1-208ENST00000557266 CCDC61Q9Y6R9 512 aa28.71■■■□□ 2.19
RCCD1-208ENST00000557266 MON2Q7Z3U7 1717 aa28.71■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms