RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 KTN1Q86UP2 1357 aaKnown RBP15.09■□□□□ 0.01
SHMT2-218ENST00000555213 LMOD2Q6P5Q4 547 aa15.08■□□□□ 0
SHMT2-218ENST00000555213 SLC12A5Q9H2X9 1139 aa15.08■□□□□ 0
SHMT2-218ENST00000555213 SPATA31A6Q5VVP1 1343 aa15.08■□□□□ 0
SHMT2-218ENST00000555213 PNPLA6Q8IY17 1366 aa15.08■□□□□ 0
SHMT2-218ENST00000555213 ANKRD36BQ8N2N9 1353 aa15.08■□□□□ 0
SHMT2-218ENST00000555213 CPSF1Q10570 1443 aaKnown RBP15.08■□□□□ 0
SHMT2-218ENST00000555213 TRPM3Q9HCF6 1732 aaPredicted RBP15.07■□□□□ 0
SHMT2-218ENST00000555213 A0A1W2PP64 1363 aa15.07■□□□□ 0
SHMT2-218ENST00000555213 AKAP12Q02952 1782 aa15.06■□□□□ 0
SHMT2-218ENST00000555213 DDX10Q13206 875 aaKnown RBP15.06■□□□□ 0
SHMT2-218ENST00000555213 KIF7Q2M1P5 1343 aa15.06■□□□□ 0
SHMT2-218ENST00000555213 CD163L1Q9NR16 1453 aa15.06■□□□□ 0
SHMT2-218ENST00000555213 MON2Q7Z3U7 1717 aa15.06■□□□□ 0
SHMT2-218ENST00000555213 CCDC7Q96M83 1385 aa15.05■□□□□ -0
SHMT2-218ENST00000555213 EDC4Q6P2E9 1401 aaKnown RBP15.05■□□□□ -0
SHMT2-218ENST00000555213 COL22A1Q8NFW1 1626 aaPredicted RBP15.05■□□□□ -0
SHMT2-218ENST00000555213 MYOM1P52179 1685 aa15.05■□□□□ -0
SHMT2-218ENST00000555213 NRKQ7Z2Y5 1582 aa15.04■□□□□ -0
SHMT2-218ENST00000555213 TTC21AQ8NDW8 1320 aa15.04■□□□□ -0
SHMT2-218ENST00000555213 HAP1P54257 671 aaPredicted RBP15.04■□□□□ -0
SHMT2-218ENST00000555213 ALS2Q96Q42 1657 aa15.03■□□□□ -0
SHMT2-218ENST00000555213 SSH2Q76I76 1423 aa15.02■□□□□ -0
SHMT2-218ENST00000555213 TTC21BQ7Z4L5 1316 aa15.02■□□□□ -0
SHMT2-218ENST00000555213 ABTB2Q8N961 1025 aa15.02■□□□□ -0
SHMT2-218ENST00000555213 NUTM2BA6NNL0 878 aaPredicted RBP15□□□□□ -0.01
SHMT2-218ENST00000555213 NUTM2EB1AL46 878 aaPredicted RBP15□□□□□ -0.01
SHMT2-218ENST00000555213 MEX3CQ5U5Q3 659 aaKnown RBP15□□□□□ -0.01
SHMT2-218ENST00000555213 NLRP13Q86W25 1043 aa15□□□□□ -0.01
SHMT2-218ENST00000555213 NUTM2AQ8IVF1 878 aaPredicted RBP15□□□□□ -0.01
SHMT2-218ENST00000555213 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15□□□□□ -0.01
SHMT2-218ENST00000555213 MIER1Q8N108 512 aa14.99□□□□□ -0.01
SHMT2-218ENST00000555213 NSD3Q9BZ95 1437 aa14.99□□□□□ -0.01
SHMT2-218ENST00000555213 PIK3C2AO00443 1686 aa14.98□□□□□ -0.01
SHMT2-218ENST00000555213 PLEKHG5O94827 1062 aa14.98□□□□□ -0.01
SHMT2-218ENST00000555213 NLRP6P59044 892 aa14.98□□□□□ -0.01
SHMT2-218ENST00000555213 LRP6O75581 1613 aa14.97□□□□□ -0.01
SHMT2-218ENST00000555213 NUTM2GQ5VZR2 741 aa14.97□□□□□ -0.01
SHMT2-218ENST00000555213 USP19O94966 1318 aa14.96□□□□□ -0.01
SHMT2-218ENST00000555213 CGNL1Q0VF96 1302 aa14.96□□□□□ -0.01
SHMT2-218ENST00000555213 ABCA3Q99758 1704 aa14.96□□□□□ -0.01
SHMT2-218ENST00000555213 PANK3Q9H999 370 aa14.96□□□□□ -0.01
SHMT2-218ENST00000555213 ADAMTS2O95450 1211 aa14.95□□□□□ -0.02
SHMT2-218ENST00000555213 NME9Q86XW9 330 aa14.95□□□□□ -0.02
SHMT2-218ENST00000555213 CABLES1Q8TDN4 633 aa14.95□□□□□ -0.02
SHMT2-218ENST00000555213 USP31Q70CQ4 1352 aa14.95□□□□□ -0.02
SHMT2-218ENST00000555213 PHRF1Q9P1Y6 1649 aaKnown RBP14.95□□□□□ -0.02
SHMT2-218ENST00000555213 SLIT3O75094 1523 aa14.94□□□□□ -0.02
SHMT2-218ENST00000555213 KCNH5Q8NCM2 988 aa14.94□□□□□ -0.02
SHMT2-218ENST00000555213 COG3Q96JB2 828 aa14.94□□□□□ -0.02
SHMT2-218ENST00000555213 RGS17Q9UGC6 210 aaPredicted RBP14.94□□□□□ -0.02
SHMT2-218ENST00000555213 KNSTRNQ9Y448 316 aa14.94□□□□□ -0.02
SHMT2-218ENST00000555213 CRYBG1Q9Y4K1 1723 aa14.93□□□□□ -0.02
SHMT2-218ENST00000555213 CARD14Q9BXL6 1004 aa14.93□□□□□ -0.02
SHMT2-218ENST00000555213 USP54Q70EL1 1684 aa14.93□□□□□ -0.02
SHMT2-218ENST00000555213 OVOS2A0A0J9YW53 1432 aa14.92□□□□□ -0.02
SHMT2-218ENST00000555213 OVOS2Q6IE36 1432 aa14.92□□□□□ -0.02
SHMT2-218ENST00000555213 KIF20BQ96Q89 1820 aa14.92□□□□□ -0.02
SHMT2-218ENST00000555213 C8orf37Q96NL8 207 aa14.92□□□□□ -0.02
SHMT2-218ENST00000555213 NSD2O96028 1365 aa14.92□□□□□ -0.02
SHMT2-218ENST00000555213 GCP02774 474 aa14.91□□□□□ -0.02
SHMT2-218ENST00000555213 PRDM11Q9NQV5 511 aa14.91□□□□□ -0.02
SHMT2-218ENST00000555213 CPDO75976 1380 aa14.9□□□□□ -0.02
SHMT2-218ENST00000555213 NGLY1Q96IV0 654 aa14.9□□□□□ -0.02
SHMT2-218ENST00000555213 MARF1Q9Y4F3 1742 aaKnown RBP14.89□□□□□ -0.03
SHMT2-218ENST00000555213 KIAA0232Q92628 1395 aa14.89□□□□□ -0.03
SHMT2-218ENST00000555213 FYB1O15117 783 aa14.89□□□□□ -0.03
SHMT2-218ENST00000555213 SOX12O15370 315 aa14.89□□□□□ -0.03
SHMT2-218ENST00000555213 GGNBP2Q9H3C7 697 aa14.89□□□□□ -0.03
SHMT2-218ENST00000555213 PER1O15534 1290 aaPredicted RBP14.88□□□□□ -0.03
SHMT2-218ENST00000555213 ZC3H6P61129 1189 aaKnown RBP14.88□□□□□ -0.03
SHMT2-218ENST00000555213 ZRANB1Q9UGI0 708 aa14.88□□□□□ -0.03
SHMT2-218ENST00000555213 COL14A1Q05707 1796 aaKnown RBP14.88□□□□□ -0.03
SHMT2-218ENST00000555213 NFAT5O94916 1531 aa14.87□□□□□ -0.03
SHMT2-218ENST00000555213 ZBTB7CA1YPR0 619 aa14.87□□□□□ -0.03
SHMT2-218ENST00000555213 ZNF772Q68DY9 489 aaPredicted RBP14.87□□□□□ -0.03
SHMT2-218ENST00000555213 AFF2P51816 1311 aa14.87□□□□□ -0.03
SHMT2-218ENST00000555213 ABCC6O95255 1503 aa14.86□□□□□ -0.03
SHMT2-218ENST00000555213 ANKRD26Q9UPS8 1709 aa14.85□□□□□ -0.03
SHMT2-218ENST00000555213 NPC1L1Q9UHC9 1359 aa14.85□□□□□ -0.03
SHMT2-218ENST00000555213 PLCH1Q4KWH8 1693 aa14.84□□□□□ -0.03
SHMT2-218ENST00000555213 SLIT2O94813 1529 aa14.84□□□□□ -0.03
SHMT2-218ENST00000555213 FAM83GA6ND36 823 aa14.84□□□□□ -0.03
SHMT2-218ENST00000555213 FNBP4Q8N3X1 1017 aaPredicted RBP14.84□□□□□ -0.03
SHMT2-218ENST00000555213 USP21Q9UK80 565 aa14.84□□□□□ -0.03
SHMT2-218ENST00000555213 AATKQ6ZMQ8 1374 aa14.84□□□□□ -0.03
SHMT2-218ENST00000555213 NWD2Q9ULI1 1742 aa14.83□□□□□ -0.03
SHMT2-218ENST00000555213 CHRNA2Q15822 529 aa14.83□□□□□ -0.04
SHMT2-218ENST00000555213 AMER1Q5JTC6 1135 aaPredicted RBP14.83□□□□□ -0.04
SHMT2-218ENST00000555213 POTEAQ6S8J7 498 aa14.83□□□□□ -0.04
SHMT2-218ENST00000555213 MORC1Q86VD1 984 aa14.83□□□□□ -0.04
SHMT2-218ENST00000555213 ARHGEF25Q86VW2 580 aa14.83□□□□□ -0.04
SHMT2-218ENST00000555213 BTG4Q9NY30 223 aa14.82□□□□□ -0.04
SHMT2-218ENST00000555213 RTL1A6NKG5 1358 aa14.82□□□□□ -0.04
SHMT2-218ENST00000555213 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.81□□□□□ -0.04
SHMT2-218ENST00000555213 CC2D1BQ5T0F9 858 aaKnown RBP14.81□□□□□ -0.04
SHMT2-218ENST00000555213 UNC5CLQ8IV45 518 aa14.81□□□□□ -0.04
SHMT2-218ENST00000555213 LMO7Q8WWI1 1683 aa14.81□□□□□ -0.04
SHMT2-218ENST00000555213 AMPHP49418 695 aa14.8□□□□□ -0.04
SHMT2-218ENST00000555213 TRPC5Q9UL62 973 aaPredicted RBP14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms