RNA–Protein interactions for RNA: ENST00000554040.5

ATXN3-224, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 592 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-224ENST00000554040 MBD5Q9P267 1494 aa11.16□□□□□ -0.62
ATXN3-224ENST00000554040 DEPDC5O75140 1603 aa11.16□□□□□ -0.62
ATXN3-224ENST00000554040 C6orf132Q5T0Z8 1188 aa11.15□□□□□ -0.62
ATXN3-224ENST00000554040 MRPL50Q8N5N7 158 aaKnown RBP11.15□□□□□ -0.62
ATXN3-224ENST00000554040 PTPN5P54829 565 aa11.14□□□□□ -0.63
ATXN3-224ENST00000554040 RSPH4AQ5TD94 716 aa11.14□□□□□ -0.63
ATXN3-224ENST00000554040 RABGEF1Q9UJ41 708 aa11.14□□□□□ -0.63
ATXN3-224ENST00000554040 SRCAPQ6ZRS2 3230 aa11.14□□□□□ -0.63
ATXN3-224ENST00000554040 KDM5DQ9BY66 1539 aa11.14□□□□□ -0.63
ATXN3-224ENST00000554040 LTKP29376 864 aa11.13□□□□□ -0.63
ATXN3-224ENST00000554040 TXNDC2Q86VQ3 553 aa11.13□□□□□ -0.63
ATXN3-224ENST00000554040 NBPF3Q9H094 633 aa11.13□□□□□ -0.63
ATXN3-224ENST00000554040 RNF17Q9BXT8 1623 aaKnown RBP11.13□□□□□ -0.63
ATXN3-224ENST00000554040 ADGBQ8N7X0 1667 aa11.12□□□□□ -0.63
ATXN3-224ENST00000554040 WNT2BQ93097 391 aa11.12□□□□□ -0.63
ATXN3-224ENST00000554040 ARIH1Q9Y4X5 557 aaPredicted RBP11.12□□□□□ -0.63
ATXN3-224ENST00000554040 FYCO1Q9BQS8 1478 aa11.12□□□□□ -0.63
ATXN3-224ENST00000554040 IQGAP1P46940 1657 aa11.11□□□□□ -0.63
ATXN3-224ENST00000554040 STRCP1A6NGW2 1772 aa11.11□□□□□ -0.63
ATXN3-224ENST00000554040 E2F4Q16254 413 aa11.11□□□□□ -0.63
ATXN3-224ENST00000554040 RBM33Q96EV2 1170 aaKnown RBP11.11□□□□□ -0.63
ATXN3-224ENST00000554040 MTUS2Q5JR59 1369 aa11.11□□□□□ -0.63
ATXN3-224ENST00000554040 PRIM1P49642 420 aaKnown RBP11.1□□□□□ -0.63
ATXN3-224ENST00000554040 SYNMO15061 1565 aa11.1□□□□□ -0.63
ATXN3-224ENST00000554040 SPDYE16A6NNV3 312 aaPredicted RBP11.09□□□□□ -0.63
ATXN3-224ENST00000554040 EN1Q05925 392 aaPredicted RBP11.09□□□□□ -0.63
ATXN3-224ENST00000554040 KIAA1468Q9P260 1216 aa11.09□□□□□ -0.63
ATXN3-224ENST00000554040 EID1Q9Y6B2 187 aa11.09□□□□□ -0.63
ATXN3-224ENST00000554040 SCAF11Q99590 1463 aaKnown RBP11.08□□□□□ -0.64
ATXN3-224ENST00000554040 TMEM94Q12767 1356 aa11.08□□□□□ -0.64
ATXN3-224ENST00000554040 GOLGA8CPA6NN73 597 aa11.08□□□□□ -0.64
ATXN3-224ENST00000554040 TSPY4P0CV99 314 aa11.08□□□□□ -0.64
ATXN3-224ENST00000554040 TSPY10P0CW01 314 aa11.08□□□□□ -0.64
ATXN3-224ENST00000554040 KCNA6P17658 529 aa11.08□□□□□ -0.64
ATXN3-224ENST00000554040 ONECUT3O60422 494 aaPredicted RBP11.07□□□□□ -0.64
ATXN3-224ENST00000554040 NBR1Q14596 966 aa11.07□□□□□ -0.64
ATXN3-224ENST00000554040 TSR1Q2NL82 804 aaKnown RBP11.07□□□□□ -0.64
ATXN3-224ENST00000554040 TRIM6-TRIM34B2RNG4 842 aa11.06□□□□□ -0.64
ATXN3-224ENST00000554040 PROSER2Q86WR7 435 aaPredicted RBP11.06□□□□□ -0.64
ATXN3-224ENST00000554040 JCADQ9P266 1359 aa11.05□□□□□ -0.64
ATXN3-224ENST00000554040 ZNF772Q68DY9 489 aaPredicted RBP11.05□□□□□ -0.64
ATXN3-224ENST00000554040 LAPTM4BQ86VI4 370 aa11.05□□□□□ -0.64
ATXN3-224ENST00000554040 SLAIN2Q9P270 581 aa11.05□□□□□ -0.64
ATXN3-224ENST00000554040 ERVK-7P63135 1459 aa11.05□□□□□ -0.64
ATXN3-224ENST00000554040 NCOA2Q15596 1464 aa11.05□□□□□ -0.64
ATXN3-224ENST00000554040 CCDC141Q6ZP82 1450 aa11.05□□□□□ -0.64
ATXN3-224ENST00000554040 ARHGAP23Q9P227 1491 aa11.05□□□□□ -0.64
ATXN3-224ENST00000554040 TRIM52Q96A61 297 aa11.04□□□□□ -0.64
ATXN3-224ENST00000554040 SEPT9Q9UHD8 586 aaPredicted RBP11.04□□□□□ -0.64
ATXN3-224ENST00000554040 ZC3H13Q5T200 1668 aaKnown RBP11.03□□□□□ -0.64
ATXN3-224ENST00000554040 CEP162Q5TB80 1403 aa11.02□□□□□ -0.64
ATXN3-224ENST00000554040 MAP3K7O43318 606 aa11.02□□□□□ -0.65
ATXN3-224ENST00000554040 RXRBP28702 533 aa11.02□□□□□ -0.65
ATXN3-224ENST00000554040 BCAMP50895 628 aa11.02□□□□□ -0.65
ATXN3-224ENST00000554040 IFFO2Q5TF58 517 aa11.02□□□□□ -0.65
ATXN3-224ENST00000554040 ZFRQ96KR1 1074 aaKnown RBP11.02□□□□□ -0.65
ATXN3-224ENST00000554040 TSKSQ9UJT2 592 aa11.02□□□□□ -0.65
ATXN3-224ENST00000554040 ABCC3O15438 1527 aa11.02□□□□□ -0.65
ATXN3-224ENST00000554040 SLIT1O75093 1534 aa11.02□□□□□ -0.65
ATXN3-224ENST00000554040 TIAM1Q13009 1591 aa11.02□□□□□ -0.65
ATXN3-224ENST00000554040 TMEM2Q9UHN6 1383 aa11.02□□□□□ -0.65
ATXN3-224ENST00000554040 MEX3CQ5U5Q3 659 aaKnown RBP11.01□□□□□ -0.65
ATXN3-224ENST00000554040 ANKK1Q8NFD2 765 aa11.01□□□□□ -0.65
ATXN3-224ENST00000554040 SLC26A8Q96RN1 970 aa11.01□□□□□ -0.65
ATXN3-224ENST00000554040 WDR70Q9NW82 654 aa11.01□□□□□ -0.65
ATXN3-224ENST00000554040 SPATA31A6Q5VVP1 1343 aa11.01□□□□□ -0.65
ATXN3-224ENST00000554040 LRRC9Q6ZRR7 1453 aa11□□□□□ -0.65
ATXN3-224ENST00000554040 SOWAHBA6NEL2 793 aa11□□□□□ -0.65
ATXN3-224ENST00000554040 SETD1AO15047 1707 aaKnown RBP11□□□□□ -0.65
ATXN3-224ENST00000554040 MSH6P52701 1360 aa11□□□□□ -0.65
ATXN3-224ENST00000554040 XIRP1Q702N8 1843 aaKnown RBP11□□□□□ -0.65
ATXN3-224ENST00000554040 ROBO1Q9Y6N7 1651 aa10.99□□□□□ -0.65
ATXN3-224ENST00000554040 OSBPP22059 807 aa10.99□□□□□ -0.65
ATXN3-224ENST00000554040 TSHZ2Q9NRE2 1034 aa10.99□□□□□ -0.65
ATXN3-224ENST00000554040 FAM198AQ9UFP1 575 aa10.99□□□□□ -0.65
ATXN3-224ENST00000554040 GRXCR2A6NFK2 248 aa10.98□□□□□ -0.65
ATXN3-224ENST00000554040 IDI1Q13907 227 aa10.98□□□□□ -0.65
ATXN3-224ENST00000554040 CAMSAP2Q08AD1 1489 aa10.98□□□□□ -0.65
ATXN3-224ENST00000554040 C3orf80F5H4A9 247 aa10.97□□□□□ -0.65
ATXN3-224ENST00000554040 FAM98CQ17RN3 349 aaKnown RBP10.97□□□□□ -0.65
ATXN3-224ENST00000554040 ARHGAP31Q2M1Z3 1444 aa10.97□□□□□ -0.65
ATXN3-224ENST00000554040 PRDM15P57071 1507 aaPredicted RBP10.97□□□□□ -0.65
ATXN3-224ENST00000554040 MAP3K1Q13233 1512 aa10.97□□□□□ -0.65
ATXN3-224ENST00000554040 UBR1Q8IWV7 1749 aa10.97□□□□□ -0.65
ATXN3-224ENST00000554040 CDHR5Q9HBB8 845 aa10.96□□□□□ -0.65
ATXN3-224ENST00000554040 EHBP1L1Q8N3D4 1523 aa10.95□□□□□ -0.66
ATXN3-224ENST00000554040 FGD6Q6ZV73 1430 aa10.95□□□□□ -0.66
ATXN3-224ENST00000554040 CDCA7LQ96GN5 454 aa10.95□□□□□ -0.66
ATXN3-224ENST00000554040 LRP6O75581 1613 aa10.95□□□□□ -0.66
ATXN3-224ENST00000554040 CFAP65Q6ZU64 1925 aaKnown RBP10.94□□□□□ -0.66
ATXN3-224ENST00000554040 BCANQ96GW7 911 aa10.94□□□□□ -0.66
ATXN3-224ENST00000554040 WBP1LQ9NX94 342 aa10.94□□□□□ -0.66
ATXN3-224ENST00000554040 TET3O43151 1660 aa10.93□□□□□ -0.66
ATXN3-224ENST00000554040 ITGBL1O95965 494 aaPredicted RBP10.93□□□□□ -0.66
ATXN3-224ENST00000554040 PRSS12P56730 875 aa10.93□□□□□ -0.66
ATXN3-224ENST00000554040 ARHGEF5Q12774 1597 aa10.93□□□□□ -0.66
ATXN3-224ENST00000554040 NKTRP30414 1462 aaKnown RBP10.93□□□□□ -0.66
ATXN3-224ENST00000554040 CDK12Q9NYV4 1490 aaPredicted RBP10.93□□□□□ -0.66
ATXN3-224ENST00000554040 A0A0G2JS52 829 aa10.92□□□□□ -0.66
ATXN3-224ENST00000554040 NUTM2BA6NNL0 878 aaPredicted RBP10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms