RNA–Protein interactions for RNA: ENST00000553855.5

PSEN1-209, Transcript of presenilin 1, humanhuman

TSL 1 (best)

Gene PSEN1, Length 1,254 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSEN1-209ENST00000553855 NUTM2FA1L443 756 aa11.84□□□□□ -0.51
PSEN1-209ENST00000553855 MNX1P50219 401 aaPredicted RBP11.84□□□□□ -0.51
PSEN1-209ENST00000553855 NKX1-1Q15270 411 aaPredicted RBP11.84□□□□□ -0.51
PSEN1-209ENST00000553855 MINK1Q8N4C8 1332 aaPredicted RBP11.84□□□□□ -0.51
PSEN1-209ENST00000553855 ADGRB1O14514 1584 aa11.84□□□□□ -0.51
PSEN1-209ENST00000553855 C1orf167Q5SNV9 1468 aa11.83□□□□□ -0.52
PSEN1-209ENST00000553855 NALCNQ8IZF0 1738 aa11.83□□□□□ -0.52
PSEN1-209ENST00000553855 CDC42BPGQ6DT37 1551 aa11.83□□□□□ -0.52
PSEN1-209ENST00000553855 NBPF1Q3BBV0 1214 aa11.82□□□□□ -0.52
PSEN1-209ENST00000553855 LRRC59Q96AG4 307 aaKnown RBP11.82□□□□□ -0.52
PSEN1-209ENST00000553855 KIAA1210Q9ULL0 1709 aa11.82□□□□□ -0.52
PSEN1-209ENST00000553855 NPHP3Q7Z494 1330 aa11.82□□□□□ -0.52
PSEN1-209ENST00000553855 JCADQ9P266 1359 aa11.81□□□□□ -0.52
PSEN1-209ENST00000553855 CHRM1P11229 460 aaPredicted RBP11.81□□□□□ -0.52
PSEN1-209ENST00000553855 CD44P16070 742 aaKnown RBP11.81□□□□□ -0.52
PSEN1-209ENST00000553855 NBR1Q14596 966 aa11.81□□□□□ -0.52
PSEN1-209ENST00000553855 ORAI2Q96SN7 254 aa11.81□□□□□ -0.52
PSEN1-209ENST00000553855 HIRIP3Q9BW71 556 aaPredicted RBP11.81□□□□□ -0.52
PSEN1-209ENST00000553855 TIMELESSQ9UNS1 1208 aa11.81□□□□□ -0.52
PSEN1-209ENST00000553855 CENPJQ9HC77 1338 aaPredicted RBP11.81□□□□□ -0.52
PSEN1-209ENST00000553855 C19orf67A6NJJ6 358 aa11.8□□□□□ -0.52
PSEN1-209ENST00000553855 STK25O00506 426 aa11.8□□□□□ -0.52
PSEN1-209ENST00000553855 GTPBP6O43824 516 aaPredicted RBP11.8□□□□□ -0.52
PSEN1-209ENST00000553855 PAK3O75914 559 aaPredicted RBP11.8□□□□□ -0.52
PSEN1-209ENST00000553855 CARD11Q9BXL7 1154 aa11.8□□□□□ -0.52
PSEN1-209ENST00000553855 PHLPP1O60346 1717 aa11.8□□□□□ -0.52
PSEN1-209ENST00000553855 WASLO00401 505 aaPredicted RBP11.79□□□□□ -0.52
PSEN1-209ENST00000553855 MEX3CQ5U5Q3 659 aaKnown RBP11.79□□□□□ -0.52
PSEN1-209ENST00000553855 AHDC1Q5TGY3 1603 aaPredicted RBP11.78□□□□□ -0.52
PSEN1-209ENST00000553855 PSME1Q06323 249 aa11.78□□□□□ -0.52
PSEN1-209ENST00000553855 PHF8Q9UPP1 1060 aa11.78□□□□□ -0.52
PSEN1-209ENST00000553855 SPATA31A6Q5VVP1 1343 aa11.78□□□□□ -0.52
PSEN1-209ENST00000553855 ANKARQ7Z5J8 1434 aa11.77□□□□□ -0.52
PSEN1-209ENST00000553855 FOXO3O43524 673 aa11.77□□□□□ -0.53
PSEN1-209ENST00000553855 SRPK2P78362 688 aaKnown RBP11.77□□□□□ -0.53
PSEN1-209ENST00000553855 RASEFQ8IZ41 740 aa11.77□□□□□ -0.53
PSEN1-209ENST00000553855 SGIP1Q9BQI5 828 aa11.77□□□□□ -0.53
PSEN1-209ENST00000553855 NBPF8Q3BBV2 869 aa11.76□□□□□ -0.53
PSEN1-209ENST00000553855 DDX17Q92841 729 aaKnown RBP11.76□□□□□ -0.53
PSEN1-209ENST00000553855 NUTM2BA6NNL0 878 aaPredicted RBP11.75□□□□□ -0.53
PSEN1-209ENST00000553855 NUTM2EB1AL46 878 aaPredicted RBP11.75□□□□□ -0.53
PSEN1-209ENST00000553855 NUTM2AQ8IVF1 878 aaPredicted RBP11.75□□□□□ -0.53
PSEN1-209ENST00000553855 NGDNQ8NEJ9 315 aaKnown RBP11.75□□□□□ -0.53
PSEN1-209ENST00000553855 CDK19Q9BWU1 502 aa11.75□□□□□ -0.53
PSEN1-209ENST00000553855 EVC2Q86UK5 1308 aa11.75□□□□□ -0.53
PSEN1-209ENST00000553855 GPRASP1Q5JY77 1395 aa11.75□□□□□ -0.53
PSEN1-209ENST00000553855 ADGRB2O60241 1585 aa11.75□□□□□ -0.53
PSEN1-209ENST00000553855 TRPM1Q7Z4N2 1603 aa11.75□□□□□ -0.53
PSEN1-209ENST00000553855 KRT28Q7Z3Y7 464 aa11.74□□□□□ -0.53
PSEN1-209ENST00000553855 PMFBP1Q8TBY8 1022 aa11.74□□□□□ -0.53
PSEN1-209ENST00000553855 NUDT16Q96DE0 195 aaKnown RBP11.74□□□□□ -0.53
PSEN1-209ENST00000553855 ZRANB1Q9UGI0 708 aa11.74□□□□□ -0.53
PSEN1-209ENST00000553855 SOS2Q07890 1332 aaPredicted RBP11.74□□□□□ -0.53
PSEN1-209ENST00000553855 COL16A1Q07092 1604 aaPredicted RBP11.74□□□□□ -0.53
PSEN1-209ENST00000553855 ARHGEF28Q8N1W1 1705 aaKnown RBP11.74□□□□□ -0.53
PSEN1-209ENST00000553855 FMN2Q9NZ56 1722 aa11.74□□□□□ -0.53
PSEN1-209ENST00000553855 XPCQ01831 940 aaPredicted RBP11.73□□□□□ -0.53
PSEN1-209ENST00000553855 KIF1AQ12756 1690 aa11.73□□□□□ -0.53
PSEN1-209ENST00000553855 MED1Q15648 1581 aaPredicted RBP11.73□□□□□ -0.53
PSEN1-209ENST00000553855 LMOD2Q6P5Q4 547 aa11.73□□□□□ -0.53
PSEN1-209ENST00000553855 RALGAPBQ86X10 1494 aa11.73□□□□□ -0.53
PSEN1-209ENST00000553855 TSPYL2Q9H2G4 693 aaPredicted RBP11.73□□□□□ -0.53
PSEN1-209ENST00000553855 TULP4Q9NRJ4 1543 aa11.73□□□□□ -0.53
PSEN1-209ENST00000553855 CCDC61Q9Y6R9 512 aa11.73□□□□□ -0.53
PSEN1-209ENST00000553855 NHSL1Q5SYE7 1610 aa11.72□□□□□ -0.53
PSEN1-209ENST00000553855 EVX2Q03828 476 aa11.72□□□□□ -0.53
PSEN1-209ENST00000553855 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.7□□□□□ -0.54
PSEN1-209ENST00000553855 ZFP91Q96JP5 570 aaPredicted RBP11.7□□□□□ -0.54
PSEN1-209ENST00000553855 BCL11BQ9C0K0 894 aaPredicted RBP11.7□□□□□ -0.54
PSEN1-209ENST00000553855 CABP2Q9NPB3 220 aa11.7□□□□□ -0.54
PSEN1-209ENST00000553855 RYDENQ9NUL5 291 aaKnown RBP11.7□□□□□ -0.54
PSEN1-209ENST00000553855 STK24Q9Y6E0 443 aa11.7□□□□□ -0.54
PSEN1-209ENST00000553855 PNPLA6Q8IY17 1366 aa11.69□□□□□ -0.54
PSEN1-209ENST00000553855 PRR36Q9H6K5 1346 aa11.69□□□□□ -0.54
PSEN1-209ENST00000553855 SHPRHQ149N8 1683 aa11.68□□□□□ -0.54
PSEN1-209ENST00000553855 ARHGEF10O15013 1369 aa11.68□□□□□ -0.54
PSEN1-209ENST00000553855 SPATA31A3Q5VYP0 1347 aa11.68□□□□□ -0.54
PSEN1-209ENST00000553855 PYGBP11216 843 aa11.68□□□□□ -0.54
PSEN1-209ENST00000553855 ZNF772Q68DY9 489 aaPredicted RBP11.68□□□□□ -0.54
PSEN1-209ENST00000553855 SBNO1A3KN83 1393 aa11.67□□□□□ -0.54
PSEN1-209ENST00000553855 ADAMTS2O95450 1211 aa11.67□□□□□ -0.54
PSEN1-209ENST00000553855 SP7Q8TDD2 431 aaPredicted RBP11.67□□□□□ -0.54
PSEN1-209ENST00000553855 PXDNQ92626 1479 aa11.67□□□□□ -0.54
PSEN1-209ENST00000553855 QRICH2Q9H0J4 1663 aa11.67□□□□□ -0.54
PSEN1-209ENST00000553855 ATAD2Q6PL18 1390 aa11.67□□□□□ -0.54
PSEN1-209ENST00000553855 ACEP12821 1306 aa11.66□□□□□ -0.54
PSEN1-209ENST00000553855 ATP7BP35670 1465 aa11.66□□□□□ -0.54
PSEN1-209ENST00000553855 PLEKHG3A1L390 1219 aa11.66□□□□□ -0.54
PSEN1-209ENST00000553855 NGLY1Q96IV0 654 aa11.66□□□□□ -0.54
PSEN1-209ENST00000553855 C8orf37Q96NL8 207 aa11.66□□□□□ -0.54
PSEN1-209ENST00000553855 TNS3Q68CZ2 1445 aa11.66□□□□□ -0.54
PSEN1-209ENST00000553855 PPIP5K1Q6PFW1 1433 aa11.66□□□□□ -0.54
PSEN1-209ENST00000553855 ITSN1Q15811 1721 aa11.66□□□□□ -0.54
PSEN1-209ENST00000553855 SBNO2Q9Y2G9 1366 aa11.66□□□□□ -0.54
PSEN1-209ENST00000553855 ST20-MTHFSA0A0A6YYL1 179 aa11.65□□□□□ -0.54
PSEN1-209ENST00000553855 CDCA8Q53HL2 280 aa11.65□□□□□ -0.54
PSEN1-209ENST00000553855 TMC1Q8TDI8 760 aa11.65□□□□□ -0.54
PSEN1-209ENST00000553855 CABP1Q9NZU7 370 aa11.65□□□□□ -0.54
PSEN1-209ENST00000553855 USP47Q96K76 1375 aa11.65□□□□□ -0.55
PSEN1-209ENST00000553855 TMF1P82094 1093 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms