RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 ABCC11Q96J66 1382 aa9.59□□□□□ -0.87
LIMA1-213ENST00000552720 YEATS2Q9ULM3 1422 aa9.59□□□□□ -0.87
LIMA1-213ENST00000552720 COL3A1P02461 1466 aaPredicted RBP9.59□□□□□ -0.87
LIMA1-213ENST00000552720 PREX1Q8TCU6 1659 aa9.59□□□□□ -0.87
LIMA1-213ENST00000552720 PTPRMP28827 1452 aa9.59□□□□□ -0.87
LIMA1-213ENST00000552720 NSD2O96028 1365 aa9.59□□□□□ -0.87
LIMA1-213ENST00000552720 TMPOP42166 694 aaKnown RBP9.59□□□□□ -0.87
LIMA1-213ENST00000552720 PRAM1Q96QH2 718 aa9.59□□□□□ -0.87
LIMA1-213ENST00000552720 TMEM131LA2VDJ0 1609 aa9.58□□□□□ -0.88
LIMA1-213ENST00000552720 CD163L1Q9NR16 1453 aa9.58□□□□□ -0.88
LIMA1-213ENST00000552720 FYB1O15117 783 aa9.58□□□□□ -0.88
LIMA1-213ENST00000552720 SMC4Q9NTJ3 1288 aa9.58□□□□□ -0.88
LIMA1-213ENST00000552720 ZKSCAN2Q63HK3 967 aa9.58□□□□□ -0.88
LIMA1-213ENST00000552720 FTSJ3Q8IY81 847 aaKnown RBP9.58□□□□□ -0.88
LIMA1-213ENST00000552720 DZIP1LQ8IYY4 767 aaKnown RBP9.58□□□□□ -0.88
LIMA1-213ENST00000552720 SSH1Q8WYL5 1049 aa9.58□□□□□ -0.88
LIMA1-213ENST00000552720 TRIM27P14373 513 aa9.57□□□□□ -0.88
LIMA1-213ENST00000552720 KIF20BQ96Q89 1820 aa9.57□□□□□ -0.88
LIMA1-213ENST00000552720 FBXO31Q5XUX0 539 aaPredicted RBP9.57□□□□□ -0.88
LIMA1-213ENST00000552720 PUS7Q96PZ0 661 aaKnown RBP9.57□□□□□ -0.88
LIMA1-213ENST00000552720 RWDD1Q9H446 243 aaPredicted RBP9.57□□□□□ -0.88
LIMA1-213ENST00000552720 MAP2P11137 1827 aaKnown RBP9.57□□□□□ -0.88
LIMA1-213ENST00000552720 OSCARQ8IYS5 282 aa9.56□□□□□ -0.88
LIMA1-213ENST00000552720 POGKQ9P215 609 aa9.56□□□□□ -0.88
LIMA1-213ENST00000552720 CLTCQ00610 1675 aaKnown RBP9.56□□□□□ -0.88
LIMA1-213ENST00000552720 RIPK4P57078 832 aa9.56□□□□□ -0.88
LIMA1-213ENST00000552720 PLCB2Q00722 1185 aa9.56□□□□□ -0.88
LIMA1-213ENST00000552720 ITPRIPQ8IWB1 547 aa9.56□□□□□ -0.88
LIMA1-213ENST00000552720 NOB1Q9ULX3 412 aaKnown RBP9.56□□□□□ -0.88
LIMA1-213ENST00000552720 SPRYD3Q8NCJ5 442 aa9.55□□□□□ -0.88
LIMA1-213ENST00000552720 TBC1D32Q96NH3 1257 aa9.55□□□□□ -0.88
LIMA1-213ENST00000552720 YTHDC2Q9H6S0 1430 aaKnown RBP9.55□□□□□ -0.88
LIMA1-213ENST00000552720 NEO1Q92859 1461 aa9.55□□□□□ -0.88
LIMA1-213ENST00000552720 CABP1Q9NZU7 370 aa9.55□□□□□ -0.88
LIMA1-213ENST00000552720 ARHGAP31Q2M1Z3 1444 aa9.55□□□□□ -0.88
LIMA1-213ENST00000552720 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.54□□□□□ -0.88
LIMA1-213ENST00000552720 TMEM57Q8N5G2 664 aa9.54□□□□□ -0.88
LIMA1-213ENST00000552720 TBC1D2Q9BYX2 928 aa9.54□□□□□ -0.88
LIMA1-213ENST00000552720 LRRC7Q96NW7 1537 aa9.54□□□□□ -0.88
LIMA1-213ENST00000552720 ZFYVE9O95405 1425 aa9.54□□□□□ -0.88
LIMA1-213ENST00000552720 AAMPQ13685 434 aa9.54□□□□□ -0.88
LIMA1-213ENST00000552720 ATF7IPQ6VMQ6 1270 aa9.54□□□□□ -0.88
LIMA1-213ENST00000552720 CDK19Q9BWU1 502 aa9.54□□□□□ -0.88
LIMA1-213ENST00000552720 ALKQ9UM73 1620 aa9.53□□□□□ -0.88
LIMA1-213ENST00000552720 DIAPH1O60610 1272 aaKnown RBP9.53□□□□□ -0.88
LIMA1-213ENST00000552720 BECN1Q14457 450 aa9.53□□□□□ -0.88
LIMA1-213ENST00000552720 ANTXR1Q9H6X2 564 aa9.53□□□□□ -0.88
LIMA1-213ENST00000552720 SLC52A1Q9NWF4 448 aa9.53□□□□□ -0.88
LIMA1-213ENST00000552720 TERF2IPQ9NYB0 399 aa9.53□□□□□ -0.88
LIMA1-213ENST00000552720 WAPLQ7Z5K2 1190 aa9.53□□□□□ -0.88
LIMA1-213ENST00000552720 THUMPD2Q9BTF0 503 aaKnown RBP9.53□□□□□ -0.88
LIMA1-213ENST00000552720 UPF2Q9HAU5 1272 aaKnown RBP9.53□□□□□ -0.88
LIMA1-213ENST00000552720 ATAD2Q6PL18 1390 aa9.53□□□□□ -0.88
LIMA1-213ENST00000552720 MFAP1P55081 439 aaKnown RBP9.52□□□□□ -0.89
LIMA1-213ENST00000552720 DLG5Q8TDM6 1919 aa9.52□□□□□ -0.89
LIMA1-213ENST00000552720 HMOX1P09601 288 aa9.51□□□□□ -0.89
LIMA1-213ENST00000552720 TAOK2Q9UL54 1235 aa9.51□□□□□ -0.89
LIMA1-213ENST00000552720 DDX19BQ9UMR2 479 aa9.51□□□□□ -0.89
LIMA1-213ENST00000552720 TSPOAP1O95153 1857 aa9.51□□□□□ -0.89
LIMA1-213ENST00000552720 ARHGEF40Q8TER5 1519 aa9.51□□□□□ -0.89
LIMA1-213ENST00000552720 PRKAR2BP31323 418 aa9.51□□□□□ -0.89
LIMA1-213ENST00000552720 ANO8Q9HCE9 1232 aaPredicted RBP9.51□□□□□ -0.89
LIMA1-213ENST00000552720 CT47B1P0C2W7 299 aaPredicted RBP9.5□□□□□ -0.89
LIMA1-213ENST00000552720 HDGFL2Q7Z4V5 671 aaPredicted RBP9.5□□□□□ -0.89
LIMA1-213ENST00000552720 PHACTR3Q96KR7 559 aa9.5□□□□□ -0.89
LIMA1-213ENST00000552720 MED14O60244 1454 aa9.5□□□□□ -0.89
LIMA1-213ENST00000552720 PNPLA6Q8IY17 1366 aa9.5□□□□□ -0.89
LIMA1-213ENST00000552720 HDAC1Q13547 482 aaPredicted RBP9.5□□□□□ -0.89
LIMA1-213ENST00000552720 ZBTB40Q9NUA8 1239 aa9.5□□□□□ -0.89
LIMA1-213ENST00000552720 ZRANB1Q9UGI0 708 aa9.5□□□□□ -0.89
LIMA1-213ENST00000552720 STAG3Q9UJ98 1225 aa9.5□□□□□ -0.89
LIMA1-213ENST00000552720 ZMYM3Q14202 1370 aa9.5□□□□□ -0.89
LIMA1-213ENST00000552720 C22orf23Q9BZE7 217 aa9.49□□□□□ -0.89
LIMA1-213ENST00000552720 RSPH6AQ9H0K4 717 aa9.49□□□□□ -0.89
LIMA1-213ENST00000552720 POLKQ9UBT6 870 aa9.49□□□□□ -0.89
LIMA1-213ENST00000552720 ELL2O00472 640 aaPredicted RBP9.49□□□□□ -0.89
LIMA1-213ENST00000552720 SMC5Q8IY18 1101 aa9.49□□□□□ -0.89
LIMA1-213ENST00000552720 LNPKQ9C0E8 428 aa9.49□□□□□ -0.89
LIMA1-213ENST00000552720 C1orf115Q9H7X2 142 aa9.49□□□□□ -0.89
LIMA1-213ENST00000552720 EMILIN1Q9Y6C2 1016 aa9.49□□□□□ -0.89
LIMA1-213ENST00000552720 SETD1AO15047 1707 aaKnown RBP9.49□□□□□ -0.89
LIMA1-213ENST00000552720 IL16Q14005 1332 aa9.49□□□□□ -0.89
LIMA1-213ENST00000552720 FAM135BQ49AJ0 1406 aa9.49□□□□□ -0.89
LIMA1-213ENST00000552720 HAP1P54257 671 aaPredicted RBP9.48□□□□□ -0.89
LIMA1-213ENST00000552720 TSPYL6Q8N831 410 aa9.48□□□□□ -0.89
LIMA1-213ENST00000552720 NCKAP5LQ9HCH0 1330 aa9.48□□□□□ -0.89
LIMA1-213ENST00000552720 RIMBP3CA6NJZ7 1639 aa9.48□□□□□ -0.89
LIMA1-213ENST00000552720 RIMBP3BA6NNM3 1639 aa9.48□□□□□ -0.89
LIMA1-213ENST00000552720 RIMBP3Q9UFD9 1639 aa9.48□□□□□ -0.89
LIMA1-213ENST00000552720 CDC42BPGQ6DT37 1551 aa9.48□□□□□ -0.89
LIMA1-213ENST00000552720 ARXQ96QS3 562 aa9.47□□□□□ -0.89
LIMA1-213ENST00000552720 FCHSD2O94868 740 aa9.47□□□□□ -0.89
LIMA1-213ENST00000552720 NME9Q86XW9 330 aa9.47□□□□□ -0.89
LIMA1-213ENST00000552720 KIF16BQ96L93 1317 aa9.47□□□□□ -0.89
LIMA1-213ENST00000552720 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.46□□□□□ -0.89
LIMA1-213ENST00000552720 MLECQ14165 292 aa9.46□□□□□ -0.9
LIMA1-213ENST00000552720 PPIP5K1Q6PFW1 1433 aa9.45□□□□□ -0.9
LIMA1-213ENST00000552720 FAM83GA6ND36 823 aa9.45□□□□□ -0.9
LIMA1-213ENST00000552720 IPO8O15397 1037 aaKnown RBP9.45□□□□□ -0.9
LIMA1-213ENST00000552720 VAMP4O75379 141 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms