RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 FAM83GA6ND36 823 aa18.49■□□□□ 0.55
CUX1-214ENST00000550008 WASLO00401 505 aaPredicted RBP18.49■□□□□ 0.55
CUX1-214ENST00000550008 TNNQ9UQP3 1299 aa18.49■□□□□ 0.55
CUX1-214ENST00000550008 ATF3P18847 181 aa18.48■□□□□ 0.55
CUX1-214ENST00000550008 SPINK5Q9NQ38 1064 aaPredicted RBP18.48■□□□□ 0.55
CUX1-214ENST00000550008 FYB1O15117 783 aa18.48■□□□□ 0.55
CUX1-214ENST00000550008 SYTL4Q96C24 671 aaPredicted RBP18.47■□□□□ 0.55
CUX1-214ENST00000550008 GPRASP1Q5JY77 1395 aa18.47■□□□□ 0.55
CUX1-214ENST00000550008 USHBP1Q8N6Y0 703 aa18.47■□□□□ 0.55
CUX1-214ENST00000550008 GAS2L2Q8NHY3 880 aa18.47■□□□□ 0.55
CUX1-214ENST00000550008 NCKAP5LQ9HCH0 1330 aa18.47■□□□□ 0.55
CUX1-214ENST00000550008 UBTFL1P0CB47 393 aaPredicted RBP18.46■□□□□ 0.55
CUX1-214ENST00000550008 AMOTL2Q9Y2J4 779 aa18.46■□□□□ 0.55
CUX1-214ENST00000550008 IGHDP01880 384 aa18.46■□□□□ 0.55
CUX1-214ENST00000550008 NEXNQ0ZGT2 675 aa18.46■□□□□ 0.55
CUX1-214ENST00000550008 DDX49Q9Y6V7 483 aaKnown RBP18.46■□□□□ 0.55
CUX1-214ENST00000550008 PLEKHH1Q9ULM0 1364 aa18.46■□□□□ 0.55
CUX1-214ENST00000550008 HDGFL1Q5TGJ6 251 aa18.46■□□□□ 0.55
CUX1-214ENST00000550008 HDAC5Q9UQL6 1122 aa18.45■□□□□ 0.54
CUX1-214ENST00000550008 SURF6O75683 361 aaKnown RBP18.45■□□□□ 0.54
CUX1-214ENST00000550008 NKTRP30414 1462 aaKnown RBP18.45■□□□□ 0.54
CUX1-214ENST00000550008 DIAPH3Q9NSV4 1193 aa18.44■□□□□ 0.54
CUX1-214ENST00000550008 ZC3H6P61129 1189 aaKnown RBP18.44■□□□□ 0.54
CUX1-214ENST00000550008 AAMPQ13685 434 aa18.44■□□□□ 0.54
CUX1-214ENST00000550008 SHANK2Q9UPX8 1470 aa18.44■□□□□ 0.54
CUX1-214ENST00000550008 REC8O95072 547 aa18.44■□□□□ 0.54
CUX1-214ENST00000550008 TRIM27P14373 513 aa18.44■□□□□ 0.54
CUX1-214ENST00000550008 HSP90B1P14625 803 aaKnown RBP18.43■□□□□ 0.54
CUX1-214ENST00000550008 ADGRL2O95490 1459 aa18.42■□□□□ 0.54
CUX1-214ENST00000550008 IFIT2P09913 472 aaKnown RBP18.42■□□□□ 0.54
CUX1-214ENST00000550008 ZNF530Q6P9A1 599 aaPredicted RBP18.42■□□□□ 0.54
CUX1-214ENST00000550008 CHMP5Q9NZZ3 219 aa18.42■□□□□ 0.54
CUX1-214ENST00000550008 CFAP65Q6ZU64 1925 aaKnown RBP18.42■□□□□ 0.54
CUX1-214ENST00000550008 CCDC30Q5VVM6 783 aa18.42■□□□□ 0.54
CUX1-214ENST00000550008 RIC3Q7Z5B4 369 aa18.42■□□□□ 0.54
CUX1-214ENST00000550008 ABCC2Q92887 1545 aa18.42■□□□□ 0.54
CUX1-214ENST00000550008 LRPPRCP42704 1394 aaKnown RBP18.41■□□□□ 0.54
CUX1-214ENST00000550008 FOXO3O43524 673 aa18.41■□□□□ 0.54
CUX1-214ENST00000550008 CDC45O75419 566 aa18.41■□□□□ 0.54
CUX1-214ENST00000550008 INTS3Q68E01 1043 aaKnown RBP18.41■□□□□ 0.54
CUX1-214ENST00000550008 ANKLE2Q86XL3 938 aa18.41■□□□□ 0.54
CUX1-214ENST00000550008 F6X3S4 739 aa18.4■□□□□ 0.54
CUX1-214ENST00000550008 DMRT2Q9Y5R5 561 aa18.4■□□□□ 0.54
CUX1-214ENST00000550008 CHD1LQ86WJ1 897 aa18.4■□□□□ 0.54
CUX1-214ENST00000550008 ZNF518AQ6AHZ1 1483 aa18.39■□□□□ 0.53
CUX1-214ENST00000550008 CT47B1P0C2W7 299 aaPredicted RBP18.39■□□□□ 0.53
CUX1-214ENST00000550008 G3BP1Q13283 466 aaKnown RBP eCLIP18.38■□□□□ 0.53
CUX1-214ENST00000550008 HSP90AB2PQ58FF8 381 aa18.38■□□□□ 0.53
CUX1-214ENST00000550008 SPATA31E1Q6ZUB1 1445 aa18.38■□□□□ 0.53
CUX1-214ENST00000550008 ABCC10Q5T3U5 1492 aa18.38■□□□□ 0.53
CUX1-214ENST00000550008 DDX58O95786 925 aaKnown RBP18.38■□□□□ 0.53
CUX1-214ENST00000550008 EXOC6BQ9Y2D4 811 aa18.38■□□□□ 0.53
CUX1-214ENST00000550008 PCDHB15Q9Y5E8 787 aa18.38■□□□□ 0.53
CUX1-214ENST00000550008 MSNP26038 577 aaKnown RBP18.37■□□□□ 0.53
CUX1-214ENST00000550008 MBD5Q9P267 1494 aa18.37■□□□□ 0.53
CUX1-214ENST00000550008 IL1RAPL2Q9NP60 686 aa18.37■□□□□ 0.53
CUX1-214ENST00000550008 ASXL1Q8IXJ9 1541 aa18.37■□□□□ 0.53
CUX1-214ENST00000550008 DDX11L8A8MPP1 907 aa18.37■□□□□ 0.53
CUX1-214ENST00000550008 UHRF1BP1Q6BDS2 1440 aa18.37■□□□□ 0.53
CUX1-214ENST00000550008 GNAI3P08754 354 aa18.37■□□□□ 0.53
CUX1-214ENST00000550008 SMARCA5O60264 1052 aaPredicted RBP18.36■□□□□ 0.53
CUX1-214ENST00000550008 MAP4K4O95819 1239 aaPredicted RBP18.36■□□□□ 0.53
CUX1-214ENST00000550008 AEBP1Q8IUX7 1158 aa18.36■□□□□ 0.53
CUX1-214ENST00000550008 ARHGEF12Q9NZN5 1544 aa18.36■□□□□ 0.53
CUX1-214ENST00000550008 RLBP1P12271 317 aa18.36■□□□□ 0.53
CUX1-214ENST00000550008 GCC1Q96CN9 775 aa18.36■□□□□ 0.53
CUX1-214ENST00000550008 STRN4Q9NRL3 753 aa18.36■□□□□ 0.53
CUX1-214ENST00000550008 ACEP12821 1306 aa18.36■□□□□ 0.53
CUX1-214ENST00000550008 GNAI2P04899 355 aa18.36■□□□□ 0.53
CUX1-214ENST00000550008 PLEKHO1Q53GL0 409 aaPredicted RBP18.36■□□□□ 0.53
CUX1-214ENST00000550008 TOMM22Q9NS69 142 aa18.35■□□□□ 0.53
CUX1-214ENST00000550008 GTF2E1P29083 439 aaPredicted RBP18.35■□□□□ 0.53
CUX1-214ENST00000550008 GNL2Q13823 731 aaKnown RBP18.35■□□□□ 0.53
CUX1-214ENST00000550008 TULP1O00294 542 aaPredicted RBP18.34■□□□□ 0.53
CUX1-214ENST00000550008 DRC7Q8IY82 874 aa18.34■□□□□ 0.53
CUX1-214ENST00000550008 COL17A1Q9UMD9 1497 aaPredicted RBP18.33■□□□□ 0.53
CUX1-214ENST00000550008 MYL6BP14649 208 aa18.33■□□□□ 0.53
CUX1-214ENST00000550008 NEUROD6Q96NK8 337 aa18.33■□□□□ 0.53
CUX1-214ENST00000550008 PRKCSHP14314 528 aaPredicted RBP18.33■□□□□ 0.53
CUX1-214ENST00000550008 NEK4P51957 841 aa18.33■□□□□ 0.53
CUX1-214ENST00000550008 SIL1Q9H173 461 aa18.33■□□□□ 0.53
CUX1-214ENST00000550008 MBIPQ9NS73 344 aa18.33■□□□□ 0.52
CUX1-214ENST00000550008 POLKQ9UBT6 870 aa18.33■□□□□ 0.52
CUX1-214ENST00000550008 ANKRD36BQ8N2N9 1353 aa18.32■□□□□ 0.52
CUX1-214ENST00000550008 MCTP1Q6DN14 999 aa18.32■□□□□ 0.52
CUX1-214ENST00000550008 PHACTR3Q96KR7 559 aa18.32■□□□□ 0.52
CUX1-214ENST00000550008 NINLQ9Y2I6 1382 aa18.31■□□□□ 0.52
CUX1-214ENST00000550008 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18.31■□□□□ 0.52
CUX1-214ENST00000550008 KRT24Q2M2I5 525 aa18.31■□□□□ 0.52
CUX1-214ENST00000550008 DDX54Q8TDD1 881 aaKnown RBP18.31■□□□□ 0.52
CUX1-214ENST00000550008 CLASRPQ8N2M8 674 aaKnown RBP18.3■□□□□ 0.52
CUX1-214ENST00000550008 IFT57Q9NWB7 429 aa18.3■□□□□ 0.52
CUX1-214ENST00000550008 ISY1Q9ULR0 285 aaKnown RBP18.3■□□□□ 0.52
CUX1-214ENST00000550008 SRCIN1Q9C0H9 1055 aa18.3■□□□□ 0.52
CUX1-214ENST00000550008 FAM177BA6PVY3 158 aa18.29■□□□□ 0.52
CUX1-214ENST00000550008 ARID3AQ99856 593 aa18.29■□□□□ 0.52
CUX1-214ENST00000550008 GNAT3A8MTJ3 354 aa18.29■□□□□ 0.52
CUX1-214ENST00000550008 ZKSCAN1P17029 563 aaPredicted RBP18.29■□□□□ 0.52
CUX1-214ENST00000550008 PHF8Q9UPP1 1060 aa18.29■□□□□ 0.52
CUX1-214ENST00000550008 A0A1W2PP64 1363 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms