RNA–Protein interactions for RNA: ENST00000549686.5

LETMD1-220, Transcript of LETM1 domain containing 1, humanhuman

TSL 2

Gene LETMD1, Length 563 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LETMD1-220ENST00000549686 PSME1Q06323 249 aa23.58■■□□□ 1.37
LETMD1-220ENST00000549686 MORC1Q86VD1 984 aa23.58■■□□□ 1.37
LETMD1-220ENST00000549686 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.58■■□□□ 1.37
LETMD1-220ENST00000549686 NRKQ7Z2Y5 1582 aa23.57■■□□□ 1.36
LETMD1-220ENST00000549686 CNGB1Q14028 1251 aaPredicted RBP23.56■■□□□ 1.36
LETMD1-220ENST00000549686 NPHP3Q7Z494 1330 aa23.56■■□□□ 1.36
LETMD1-220ENST00000549686 NLRP13Q86W25 1043 aa23.55■■□□□ 1.36
LETMD1-220ENST00000549686 FOXO3O43524 673 aa23.54■■□□□ 1.36
LETMD1-220ENST00000549686 BRINP3Q76B58 766 aa23.54■■□□□ 1.36
LETMD1-220ENST00000549686 GGNBP2Q9H3C7 697 aa23.54■■□□□ 1.36
LETMD1-220ENST00000549686 SCAF1Q9H7N4 1312 aaKnown RBP23.54■■□□□ 1.36
LETMD1-220ENST00000549686 COG3Q96JB2 828 aa23.53■■□□□ 1.36
LETMD1-220ENST00000549686 USP31Q70CQ4 1352 aa23.52■■□□□ 1.36
LETMD1-220ENST00000549686 NME9Q86XW9 330 aa23.52■■□□□ 1.36
LETMD1-220ENST00000549686 KRT28Q7Z3Y7 464 aa23.51■■□□□ 1.35
LETMD1-220ENST00000549686 KIF20BQ96Q89 1820 aa23.51■■□□□ 1.35
LETMD1-220ENST00000549686 PPP2R1AP30153 589 aa23.5■■□□□ 1.35
LETMD1-220ENST00000549686 TOM1O60784 492 aa23.49■■□□□ 1.35
LETMD1-220ENST00000549686 ANKRD26Q9UPS8 1709 aa23.49■■□□□ 1.35
LETMD1-220ENST00000549686 SBNO1A3KN83 1393 aa23.49■■□□□ 1.35
LETMD1-220ENST00000549686 PAK3O75914 559 aaPredicted RBP23.48■■□□□ 1.35
LETMD1-220ENST00000549686 OVOS2A0A0J9YW53 1432 aa23.48■■□□□ 1.35
LETMD1-220ENST00000549686 OVOS2Q6IE36 1432 aa23.48■■□□□ 1.35
LETMD1-220ENST00000549686 ABTB2Q8N961 1025 aa23.47■■□□□ 1.35
LETMD1-220ENST00000549686 MRS2Q9HD23 443 aa23.46■■□□□ 1.35
LETMD1-220ENST00000549686 AATKQ6ZMQ8 1374 aa23.45■■□□□ 1.34
LETMD1-220ENST00000549686 NLRP6P59044 892 aa23.44■■□□□ 1.34
LETMD1-220ENST00000549686 CERKQ8TCT0 537 aa23.44■■□□□ 1.34
LETMD1-220ENST00000549686 PXDNQ92626 1479 aa23.43■■□□□ 1.34
LETMD1-220ENST00000549686 SOS2Q07890 1332 aaPredicted RBP23.43■■□□□ 1.34
LETMD1-220ENST00000549686 PIK3C2AO00443 1686 aa23.41■■□□□ 1.34
LETMD1-220ENST00000549686 USP54Q70EL1 1684 aa23.41■■□□□ 1.34
LETMD1-220ENST00000549686 TNNT2P45379 298 aaPredicted RBP23.41■■□□□ 1.34
LETMD1-220ENST00000549686 XPCQ01831 940 aaPredicted RBP23.41■■□□□ 1.34
LETMD1-220ENST00000549686 ZRANB1Q9UGI0 708 aa23.41■■□□□ 1.34
LETMD1-220ENST00000549686 TRPM3Q9HCF6 1732 aaPredicted RBP23.41■■□□□ 1.34
LETMD1-220ENST00000549686 TNS3Q68CZ2 1445 aa23.41■■□□□ 1.34
LETMD1-220ENST00000549686 ARHGEF10O15013 1369 aa23.4■■□□□ 1.34
LETMD1-220ENST00000549686 CFAP53Q96M91 514 aa23.39■■□□□ 1.33
LETMD1-220ENST00000549686 SPATA31A3Q5VYP0 1347 aa23.38■■□□□ 1.33
LETMD1-220ENST00000549686 KCNH5Q8NCM2 988 aa23.38■■□□□ 1.33
LETMD1-220ENST00000549686 NHSL1Q5SYE7 1610 aa23.37■■□□□ 1.33
LETMD1-220ENST00000549686 UBAP1LF5GYI3 381 aa23.37■■□□□ 1.33
LETMD1-220ENST00000549686 MTHFSP49914 203 aa23.37■■□□□ 1.33
LETMD1-220ENST00000549686 SMG6Q86US8 1419 aaKnown RBP23.36■■□□□ 1.33
LETMD1-220ENST00000549686 CCDC184Q52MB2 194 aa23.36■■□□□ 1.33
LETMD1-220ENST00000549686 DDX17Q92841 729 aaKnown RBP23.36■■□□□ 1.33
LETMD1-220ENST00000549686 AHDC1Q5TGY3 1603 aaPredicted RBP23.36■■□□□ 1.33
LETMD1-220ENST00000549686 USP19O94966 1318 aa23.35■■□□□ 1.33
LETMD1-220ENST00000549686 ROBO1Q9Y6N7 1651 aa23.35■■□□□ 1.33
LETMD1-220ENST00000549686 LMOD2Q6P5Q4 547 aa23.35■■□□□ 1.33
LETMD1-220ENST00000549686 POLKQ9UBT6 870 aa23.34■■□□□ 1.33
LETMD1-220ENST00000549686 ALS2Q96Q42 1657 aa23.34■■□□□ 1.33
LETMD1-220ENST00000549686 INSRP06213 1382 aa23.33■■□□□ 1.33
LETMD1-220ENST00000549686 KIF24Q5T7B8 1368 aa23.33■■□□□ 1.33
LETMD1-220ENST00000549686 NUTM2GQ5VZR2 741 aa23.33■■□□□ 1.33
LETMD1-220ENST00000549686 PNISRQ8TF01 805 aaKnown RBP23.32■■□□□ 1.32
LETMD1-220ENST00000549686 SLIT3O75094 1523 aa23.32■■□□□ 1.32
LETMD1-220ENST00000549686 PNPLA6Q8IY17 1366 aa23.31■■□□□ 1.32
LETMD1-220ENST00000549686 CDK12Q9NYV4 1490 aaPredicted RBP23.3■■□□□ 1.32
LETMD1-220ENST00000549686 LRRC59Q96AG4 307 aaKnown RBP23.3■■□□□ 1.32
LETMD1-220ENST00000549686 MED1Q15648 1581 aaPredicted RBP23.29■■□□□ 1.32
LETMD1-220ENST00000549686 GCP02774 474 aa23.28■■□□□ 1.32
LETMD1-220ENST00000549686 PIP4K2BP78356 416 aa23.28■■□□□ 1.32
LETMD1-220ENST00000549686 MARF1Q9Y4F3 1742 aaKnown RBP23.28■■□□□ 1.32
LETMD1-220ENST00000549686 RRS1Q15050 365 aaKnown RBP23.27■■□□□ 1.32
LETMD1-220ENST00000549686 WDR43Q15061 677 aaKnown RBP eCLIP23.27■■□□□ 1.32
LETMD1-220ENST00000549686 EMILIN1Q9Y6C2 1016 aa23.27■■□□□ 1.32
LETMD1-220ENST00000549686 RTL1A6NKG5 1358 aa23.27■■□□□ 1.31
LETMD1-220ENST00000549686 NUDCQ9Y266 331 aa23.26■■□□□ 1.31
LETMD1-220ENST00000549686 NFAT5O94916 1531 aa23.26■■□□□ 1.31
LETMD1-220ENST00000549686 MAP3K19Q56UN5 1328 aa23.26■■□□□ 1.31
LETMD1-220ENST00000549686 PPM1GO15355 546 aaPredicted RBP23.25■■□□□ 1.31
LETMD1-220ENST00000549686 SOX12O15370 315 aa23.25■■□□□ 1.31
LETMD1-220ENST00000549686 FAM9BQ8IZU0 186 aa23.25■■□□□ 1.31
LETMD1-220ENST00000549686 FLT4P35916 1363 aa23.25■■□□□ 1.31
LETMD1-220ENST00000549686 FBLN1P23142 703 aa23.24■■□□□ 1.31
LETMD1-220ENST00000549686 AMPHP49418 695 aa23.24■■□□□ 1.31
LETMD1-220ENST00000549686 COL3A1P02461 1466 aaPredicted RBP23.24■■□□□ 1.31
LETMD1-220ENST00000549686 DIAPH1O60610 1272 aaKnown RBP23.23■■□□□ 1.31
LETMD1-220ENST00000549686 ARHGEF25Q86VW2 580 aa23.21■■□□□ 1.31
LETMD1-220ENST00000549686 MAP2P11137 1827 aaKnown RBP23.21■■□□□ 1.31
LETMD1-220ENST00000549686 CPDO75976 1380 aa23.19■■□□□ 1.3
LETMD1-220ENST00000549686 PHLPP1O60346 1717 aa23.19■■□□□ 1.3
LETMD1-220ENST00000549686 COL16A1Q07092 1604 aaPredicted RBP23.19■■□□□ 1.3
LETMD1-220ENST00000549686 IP6K1Q92551 441 aa23.18■■□□□ 1.3
LETMD1-220ENST00000549686 PHRF1Q9P1Y6 1649 aaKnown RBP23.18■■□□□ 1.3
LETMD1-220ENST00000549686 HOXC9P31274 260 aa23.17■■□□□ 1.3
LETMD1-220ENST00000549686 ABCC6O95255 1503 aa23.17■■□□□ 1.3
LETMD1-220ENST00000549686 IL13P35225 146 aa23.16■■□□□ 1.3
LETMD1-220ENST00000549686 HAP1P54257 671 aaPredicted RBP23.16■■□□□ 1.3
LETMD1-220ENST00000549686 ADAMTS8Q9UP79 889 aa23.16■■□□□ 1.3
LETMD1-220ENST00000549686 HSP90AB2PQ58FF8 381 aa23.15■■□□□ 1.3
LETMD1-220ENST00000549686 CABLES1Q8TDN4 633 aa23.15■■□□□ 1.3
LETMD1-220ENST00000549686 CRYBG1Q9Y4K1 1723 aa23.15■■□□□ 1.3
LETMD1-220ENST00000549686 BLMP54132 1417 aaPredicted RBP23.15■■□□□ 1.3
LETMD1-220ENST00000549686 COL22A1Q8NFW1 1626 aaPredicted RBP23.15■■□□□ 1.3
LETMD1-220ENST00000549686 PEAK1Q9H792 1746 aa23.14■■□□□ 1.3
LETMD1-220ENST00000549686 PNNQ9H307 717 aaKnown RBP23.14■■□□□ 1.29
LETMD1-220ENST00000549686 U2AF1L5P0DN76 240 aaPredicted RBP23.13■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 119.3 ms