RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 UPF2Q9HAU5 1272 aaKnown RBP20.12■□□□□ 0.81
LDLR-204ENST00000545707 TERF2IPQ9NYB0 399 aa20.1■□□□□ 0.81
LDLR-204ENST00000545707 CABP1Q9NZU7 370 aa20.1■□□□□ 0.81
LDLR-204ENST00000545707 VIRMAQ69YN4 1812 aaKnown RBP20.1■□□□□ 0.81
LDLR-204ENST00000545707 TBC1D2Q9BYX2 928 aa20.1■□□□□ 0.81
LDLR-204ENST00000545707 YEATS2Q9ULM3 1422 aa20.09■□□□□ 0.81
LDLR-204ENST00000545707 PIK3C2BO00750 1634 aa20.09■□□□□ 0.81
LDLR-204ENST00000545707 ADGRB2O60241 1585 aa20.09■□□□□ 0.81
LDLR-204ENST00000545707 ATF7IPQ6VMQ6 1270 aa20.08■□□□□ 0.81
LDLR-204ENST00000545707 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.08■□□□□ 0.81
LDLR-204ENST00000545707 TMEM57Q8N5G2 664 aa20.08■□□□□ 0.81
LDLR-204ENST00000545707 SLC52A1Q9NWF4 448 aa20.08■□□□□ 0.81
LDLR-204ENST00000545707 DIAPH1O60610 1272 aaKnown RBP20.08■□□□□ 0.8
LDLR-204ENST00000545707 CDK19Q9BWU1 502 aa20.08■□□□□ 0.8
LDLR-204ENST00000545707 NCBP3Q53F19 620 aaKnown RBP20.07■□□□□ 0.8
LDLR-204ENST00000545707 CFAP74Q9C0B2 1584 aa20.07■□□□□ 0.8
LDLR-204ENST00000545707 MFAP1P55081 439 aaKnown RBP20.06■□□□□ 0.8
LDLR-204ENST00000545707 COL3A1P02461 1466 aaPredicted RBP20.06■□□□□ 0.8
LDLR-204ENST00000545707 CD163L1Q9NR16 1453 aa20.06■□□□□ 0.8
LDLR-204ENST00000545707 DIP2CQ9Y2E4 1556 aa20.06■□□□□ 0.8
LDLR-204ENST00000545707 CT47B1P0C2W7 299 aaPredicted RBP20.05■□□□□ 0.8
LDLR-204ENST00000545707 ANTXR1Q9H6X2 564 aa20.05■□□□□ 0.8
LDLR-204ENST00000545707 PTPRMP28827 1452 aa20.05■□□□□ 0.8
LDLR-204ENST00000545707 DDX19BQ9UMR2 479 aa20.05■□□□□ 0.8
LDLR-204ENST00000545707 ATAD2Q6PL18 1390 aa20.04■□□□□ 0.8
LDLR-204ENST00000545707 HDGFL2Q7Z4V5 671 aaPredicted RBP20.04■□□□□ 0.8
LDLR-204ENST00000545707 YTHDC2Q9H6S0 1430 aaKnown RBP20.04■□□□□ 0.8
LDLR-204ENST00000545707 WAPLQ7Z5K2 1190 aa20.03■□□□□ 0.8
LDLR-204ENST00000545707 THUMPD2Q9BTF0 503 aaKnown RBP20.03■□□□□ 0.8
LDLR-204ENST00000545707 STAG3Q9UJ98 1225 aa20.03■□□□□ 0.8
LDLR-204ENST00000545707 ARHGAP31Q2M1Z3 1444 aa20.03■□□□□ 0.8
LDLR-204ENST00000545707 HMOX1P09601 288 aa20.02■□□□□ 0.8
LDLR-204ENST00000545707 ANO8Q9HCE9 1232 aaPredicted RBP20.02■□□□□ 0.8
LDLR-204ENST00000545707 PRKAR2BP31323 418 aa20.02■□□□□ 0.79
LDLR-204ENST00000545707 HDAC1Q13547 482 aaPredicted RBP20.02■□□□□ 0.79
LDLR-204ENST00000545707 ZFYVE9O95405 1425 aa20.01■□□□□ 0.79
LDLR-204ENST00000545707 C22orf23Q9BZE7 217 aa20.01■□□□□ 0.79
LDLR-204ENST00000545707 ZBTB40Q9NUA8 1239 aa20.01■□□□□ 0.79
LDLR-204ENST00000545707 MYO5BQ9ULV0 1848 aa20.01■□□□□ 0.79
LDLR-204ENST00000545707 NEO1Q92859 1461 aa20.01■□□□□ 0.79
LDLR-204ENST00000545707 PHACTR3Q96KR7 559 aa20■□□□□ 0.79
LDLR-204ENST00000545707 IL16Q14005 1332 aa19.99■□□□□ 0.79
LDLR-204ENST00000545707 POLKQ9UBT6 870 aa19.99■□□□□ 0.79
LDLR-204ENST00000545707 ELL2O00472 640 aaPredicted RBP19.98■□□□□ 0.79
LDLR-204ENST00000545707 SMC5Q8IY18 1101 aa19.98■□□□□ 0.79
LDLR-204ENST00000545707 LNPKQ9C0E8 428 aa19.98■□□□□ 0.79
LDLR-204ENST00000545707 ZMYM3Q14202 1370 aa19.98■□□□□ 0.79
LDLR-204ENST00000545707 PNPLA6Q8IY17 1366 aa19.97■□□□□ 0.79
LDLR-204ENST00000545707 RSPH6AQ9H0K4 717 aa19.97■□□□□ 0.79
LDLR-204ENST00000545707 FCHSD2O94868 740 aa19.96■□□□□ 0.79
LDLR-204ENST00000545707 IPO8O15397 1037 aaKnown RBP19.96■□□□□ 0.79
LDLR-204ENST00000545707 ARXQ96QS3 562 aa19.96■□□□□ 0.79
LDLR-204ENST00000545707 C1orf115Q9H7X2 142 aa19.96■□□□□ 0.79
LDLR-204ENST00000545707 ZRANB1Q9UGI0 708 aa19.96■□□□□ 0.79
LDLR-204ENST00000545707 EMILIN1Q9Y6C2 1016 aa19.96■□□□□ 0.79
LDLR-204ENST00000545707 TMEM131LA2VDJ0 1609 aa19.96■□□□□ 0.79
LDLR-204ENST00000545707 TSPYL6Q8N831 410 aa19.95■□□□□ 0.78
LDLR-204ENST00000545707 KIF16BQ96L93 1317 aa19.95■□□□□ 0.78
LDLR-204ENST00000545707 PNNQ9H307 717 aaKnown RBP19.94■□□□□ 0.78
LDLR-204ENST00000545707 ARHGEF40Q8TER5 1519 aa19.94■□□□□ 0.78
LDLR-204ENST00000545707 MED14O60244 1454 aa19.92■□□□□ 0.78
LDLR-204ENST00000545707 NUCB1Q02818 461 aa19.92■□□□□ 0.78
LDLR-204ENST00000545707 ALKQ9UM73 1620 aa19.92■□□□□ 0.78
LDLR-204ENST00000545707 NCKAP5LQ9HCH0 1330 aa19.92■□□□□ 0.78
LDLR-204ENST00000545707 ALDH1L2Q3SY69 923 aa19.92■□□□□ 0.78
LDLR-204ENST00000545707 PREX1Q8TCU6 1659 aa19.91■□□□□ 0.78
LDLR-204ENST00000545707 LRRC7Q96NW7 1537 aa19.91■□□□□ 0.78
LDLR-204ENST00000545707 NME9Q86XW9 330 aa19.91■□□□□ 0.78
LDLR-204ENST00000545707 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.91■□□□□ 0.78
LDLR-204ENST00000545707 RICTORQ6R327 1708 aa19.9■□□□□ 0.78
LDLR-204ENST00000545707 VAMP4O75379 141 aa19.9■□□□□ 0.78
LDLR-204ENST00000545707 MLECQ14165 292 aa19.9■□□□□ 0.78
LDLR-204ENST00000545707 CHD1LQ86WJ1 897 aa19.9■□□□□ 0.78
LDLR-204ENST00000545707 NFE2L2Q16236 605 aa19.9■□□□□ 0.78
LDLR-204ENST00000545707 GZF1Q9H116 711 aaPredicted RBP19.9■□□□□ 0.78
LDLR-204ENST00000545707 ANKRD45Q5TZF3 282 aa19.89■□□□□ 0.77
LDLR-204ENST00000545707 FAM135BQ49AJ0 1406 aa19.89■□□□□ 0.77
LDLR-204ENST00000545707 ZBTB7BO15156 539 aaPredicted RBP19.88■□□□□ 0.77
LDLR-204ENST00000545707 MRPL50Q8N5N7 158 aaKnown RBP19.88■□□□□ 0.77
LDLR-204ENST00000545707 RRS1Q15050 365 aaKnown RBP19.87■□□□□ 0.77
LDLR-204ENST00000545707 FAM83GA6ND36 823 aa19.87■□□□□ 0.77
LDLR-204ENST00000545707 MCM4P33991 863 aa19.87■□□□□ 0.77
LDLR-204ENST00000545707 CYB5RLQ6IPT4 315 aa19.87■□□□□ 0.77
LDLR-204ENST00000545707 MBIPQ9NS73 344 aa19.87■□□□□ 0.77
LDLR-204ENST00000545707 DCTN1Q14203 1278 aa19.86■□□□□ 0.77
LDLR-204ENST00000545707 ANKRD26Q9UPS8 1709 aa19.86■□□□□ 0.77
LDLR-204ENST00000545707 CLTCQ00610 1675 aaKnown RBP19.86■□□□□ 0.77
LDLR-204ENST00000545707 IL13P35225 146 aa19.85■□□□□ 0.77
LDLR-204ENST00000545707 TXNDC2Q86VQ3 553 aa19.85■□□□□ 0.77
LDLR-204ENST00000545707 C8orf58Q8NAV2 365 aa19.85■□□□□ 0.77
LDLR-204ENST00000545707 PPIP5K1Q6PFW1 1433 aa19.85■□□□□ 0.77
LDLR-204ENST00000545707 HSCBQ8IWL3 235 aa19.84■□□□□ 0.77
LDLR-204ENST00000545707 SIRT2Q8IXJ6 389 aa19.84■□□□□ 0.77
LDLR-204ENST00000545707 CHMP5Q9NZZ3 219 aa19.84■□□□□ 0.77
LDLR-204ENST00000545707 GNAI1P63096 354 aa19.82■□□□□ 0.76
LDLR-204ENST00000545707 FAM69CQ0P6D2 419 aa19.82■□□□□ 0.76
LDLR-204ENST00000545707 TWISTNBQ3B726 338 aaPredicted RBP19.82■□□□□ 0.76
LDLR-204ENST00000545707 WASLO00401 505 aaPredicted RBP19.82■□□□□ 0.76
LDLR-204ENST00000545707 KIF20BQ96Q89 1820 aa19.81■□□□□ 0.76
LDLR-204ENST00000545707 BRPF1P55201 1214 aaPredicted RBP19.81■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms