RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 SOX12O15370 315 aa19.07■□□□□ 0.64
USP28-214ENST00000545540 TSPYL6Q8N831 410 aa19.07■□□□□ 0.64
USP28-214ENST00000545540 KIAA1210Q9ULL0 1709 aa19.07■□□□□ 0.64
USP28-214ENST00000545540 EMILIN1Q9Y6C2 1016 aa19.07■□□□□ 0.64
USP28-214ENST00000545540 DCTN1Q14203 1278 aa19.07■□□□□ 0.64
USP28-214ENST00000545540 CCDC27Q2M243 656 aa19.07■□□□□ 0.64
USP28-214ENST00000545540 TERF2IPQ9NYB0 399 aa19.06■□□□□ 0.64
USP28-214ENST00000545540 POGZQ7Z3K3 1410 aa19.06■□□□□ 0.64
USP28-214ENST00000545540 FRMPD1Q5SYB0 1578 aa19.06■□□□□ 0.64
USP28-214ENST00000545540 CYB5RLQ6IPT4 315 aa19.06■□□□□ 0.64
USP28-214ENST00000545540 C22orf23Q9BZE7 217 aa19.06■□□□□ 0.64
USP28-214ENST00000545540 RPGRIP1LQ68CZ1 1315 aa19.05■□□□□ 0.64
USP28-214ENST00000545540 YEATS2Q9ULM3 1422 aa19.05■□□□□ 0.64
USP28-214ENST00000545540 FAM83GA6ND36 823 aa19.05■□□□□ 0.64
USP28-214ENST00000545540 RRS1Q15050 365 aaKnown RBP19.04■□□□□ 0.64
USP28-214ENST00000545540 PLPPR3Q6T4P5 718 aa19.03■□□□□ 0.64
USP28-214ENST00000545540 HDGFL2Q7Z4V5 671 aaPredicted RBP19.03■□□□□ 0.64
USP28-214ENST00000545540 GLI2P10070 1586 aa19.02■□□□□ 0.64
USP28-214ENST00000545540 IFT172Q9UG01 1749 aa19.02■□□□□ 0.64
USP28-214ENST00000545540 ANTXR1Q9H6X2 564 aa19.02■□□□□ 0.64
USP28-214ENST00000545540 NLRP1Q9C000 1473 aa19.02■□□□□ 0.64
USP28-214ENST00000545540 NME9Q86XW9 330 aa19.02■□□□□ 0.64
USP28-214ENST00000545540 ABCC3O15438 1527 aa19.02■□□□□ 0.63
USP28-214ENST00000545540 ATAD2Q6PL18 1390 aa19.02■□□□□ 0.63
USP28-214ENST00000545540 NINLQ9Y2I6 1382 aa19.02■□□□□ 0.63
USP28-214ENST00000545540 ANKRD45Q5TZF3 282 aa19.02■□□□□ 0.63
USP28-214ENST00000545540 DDX19BQ9UMR2 479 aa19.02■□□□□ 0.63
USP28-214ENST00000545540 APBB1O00213 710 aa19.01■□□□□ 0.63
USP28-214ENST00000545540 POLKQ9UBT6 870 aa19.01■□□□□ 0.63
USP28-214ENST00000545540 EIF5BO60841 1220 aaKnown RBP19■□□□□ 0.63
USP28-214ENST00000545540 SIGLEC1Q9BZZ2 1709 aa18.99■□□□□ 0.63
USP28-214ENST00000545540 TXNDC2Q86VQ3 553 aa18.99■□□□□ 0.63
USP28-214ENST00000545540 ZBTB40Q9NUA8 1239 aa18.99■□□□□ 0.63
USP28-214ENST00000545540 PPLO60437 1756 aa18.99■□□□□ 0.63
USP28-214ENST00000545540 KRT24Q2M2I5 525 aa18.99■□□□□ 0.63
USP28-214ENST00000545540 ABCC11Q96J66 1382 aa18.99■□□□□ 0.63
USP28-214ENST00000545540 CAMSAP1Q5T5Y3 1602 aa18.98■□□□□ 0.63
USP28-214ENST00000545540 SETBP1Q9Y6X0 1596 aa18.97■□□□□ 0.63
USP28-214ENST00000545540 RBM42Q9BTD8 480 aaKnown RBP18.97■□□□□ 0.63
USP28-214ENST00000545540 MYO3AQ8NEV4 1616 aa18.96■□□□□ 0.63
USP28-214ENST00000545540 SLC52A1Q9NWF4 448 aa18.96■□□□□ 0.63
USP28-214ENST00000545540 LMTK2Q8IWU2 1503 aa18.95■□□□□ 0.62
USP28-214ENST00000545540 PANK2Q9BZ23 570 aa18.94■□□□□ 0.62
USP28-214ENST00000545540 RSPH6AQ9H0K4 717 aa18.94■□□□□ 0.62
USP28-214ENST00000545540 MLH3Q9UHC1 1453 aa18.94■□□□□ 0.62
USP28-214ENST00000545540 C8orf58Q8NAV2 365 aa18.94■□□□□ 0.62
USP28-214ENST00000545540 NEXMIFQ5QGS0 1516 aa18.94■□□□□ 0.62
USP28-214ENST00000545540 YTHDC2Q9H6S0 1430 aaKnown RBP18.93■□□□□ 0.62
USP28-214ENST00000545540 HDAC1Q13547 482 aaPredicted RBP18.93■□□□□ 0.62
USP28-214ENST00000545540 IPO8O15397 1037 aaKnown RBP18.93■□□□□ 0.62
USP28-214ENST00000545540 SMC5Q8IY18 1101 aa18.93■□□□□ 0.62
USP28-214ENST00000545540 CHD1LQ86WJ1 897 aa18.92■□□□□ 0.62
USP28-214ENST00000545540 MBIPQ9NS73 344 aa18.92■□□□□ 0.62
USP28-214ENST00000545540 VAMP4O75379 141 aa18.91■□□□□ 0.62
USP28-214ENST00000545540 CD2BP2O95400 341 aaKnown RBP18.91■□□□□ 0.62
USP28-214ENST00000545540 AEBP1Q8IUX7 1158 aa18.91■□□□□ 0.62
USP28-214ENST00000545540 NSD2O96028 1365 aa18.91■□□□□ 0.62
USP28-214ENST00000545540 CD163L1Q9NR16 1453 aa18.91■□□□□ 0.62
USP28-214ENST00000545540 FAM69CQ0P6D2 419 aa18.91■□□□□ 0.62
USP28-214ENST00000545540 MIS18AQ9NYP9 233 aa18.91■□□□□ 0.62
USP28-214ENST00000545540 HECW2Q9P2P5 1572 aa18.91■□□□□ 0.62
USP28-214ENST00000545540 FCHSD2O94868 740 aa18.9■□□□□ 0.62
USP28-214ENST00000545540 ZC3H13Q5T200 1668 aaKnown RBP18.9■□□□□ 0.62
USP28-214ENST00000545540 ARHGEF28Q8N1W1 1705 aaKnown RBP18.9■□□□□ 0.62
USP28-214ENST00000545540 MCM4P33991 863 aa18.9■□□□□ 0.62
USP28-214ENST00000545540 C16orf71Q8IYS4 520 aaPredicted RBP18.9■□□□□ 0.62
USP28-214ENST00000545540 HSCBQ8IWL3 235 aa18.9■□□□□ 0.62
USP28-214ENST00000545540 SIRT2Q8IXJ6 389 aa18.9■□□□□ 0.62
USP28-214ENST00000545540 NUCB1Q02818 461 aa18.89■□□□□ 0.61
USP28-214ENST00000545540 NEURL4Q96JN8 1562 aa18.89■□□□□ 0.61
USP28-214ENST00000545540 ZBTB7BO15156 539 aaPredicted RBP18.89■□□□□ 0.61
USP28-214ENST00000545540 KIF16BQ96L93 1317 aa18.89■□□□□ 0.61
USP28-214ENST00000545540 HSP90AA1P07900 732 aaKnown RBP18.88■□□□□ 0.61
USP28-214ENST00000545540 TWISTNBQ3B726 338 aaPredicted RBP18.88■□□□□ 0.61
USP28-214ENST00000545540 AAMPQ13685 434 aa18.88■□□□□ 0.61
USP28-214ENST00000545540 NFE2L2Q16236 605 aa18.88■□□□□ 0.61
USP28-214ENST00000545540 MYO5BQ9ULV0 1848 aa18.88■□□□□ 0.61
USP28-214ENST00000545540 PTPRMP28827 1452 aa18.88■□□□□ 0.61
USP28-214ENST00000545540 MCM10Q7L590 875 aa18.87■□□□□ 0.61
USP28-214ENST00000545540 MRPL50Q8N5N7 158 aaKnown RBP18.87■□□□□ 0.61
USP28-214ENST00000545540 COL3A1P02461 1466 aaPredicted RBP18.86■□□□□ 0.61
USP28-214ENST00000545540 PIK3C2BO00750 1634 aa18.86■□□□□ 0.61
USP28-214ENST00000545540 HSP90AB1P08238 724 aaKnown RBP18.86■□□□□ 0.61
USP28-214ENST00000545540 TRAK2O60296 914 aa18.86■□□□□ 0.61
USP28-214ENST00000545540 CT47B1P0C2W7 299 aaPredicted RBP18.86■□□□□ 0.61
USP28-214ENST00000545540 PUS7Q96PZ0 661 aaKnown RBP18.86■□□□□ 0.61
USP28-214ENST00000545540 OTUD7AQ8TE49 926 aaPredicted RBP18.85■□□□□ 0.61
USP28-214ENST00000545540 XRCC6P12956 609 aaKnown RBP eCLIP18.85■□□□□ 0.61
USP28-214ENST00000545540 SMARCA5O60264 1052 aaPredicted RBP18.84■□□□□ 0.61
USP28-214ENST00000545540 CHMP5Q9NZZ3 219 aa18.84■□□□□ 0.61
USP28-214ENST00000545540 PPIP5K1Q6PFW1 1433 aa18.84■□□□□ 0.61
USP28-214ENST00000545540 IL13P35225 146 aa18.83■□□□□ 0.61
USP28-214ENST00000545540 TBC1D9Q6ZT07 1266 aa18.83■□□□□ 0.61
USP28-214ENST00000545540 RRAGDQ9NQL2 400 aaPredicted RBP18.83■□□□□ 0.61
USP28-214ENST00000545540 SULT6B1Q6IMI4 303 aa18.83■□□□□ 0.6
USP28-214ENST00000545540 NUDT16Q96DE0 195 aaKnown RBP18.83■□□□□ 0.6
USP28-214ENST00000545540 IL16Q14005 1332 aa18.82■□□□□ 0.6
USP28-214ENST00000545540 PLEKHG5O94827 1062 aa18.81■□□□□ 0.6
USP28-214ENST00000545540 COG3Q96JB2 828 aa18.81■□□□□ 0.6
USP28-214ENST00000545540 PNNQ9H307 717 aaKnown RBP18.81■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 134.5 ms