RNA–Protein interactions for RNA: ENST00000544910.5

VPS50-220, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2 BASIC

Gene VPS50, Length 5,736 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-220ENST00000544910 LNPKQ9C0E8 428 aa7.16□□□□□ -1.26
VPS50-220ENST00000544910 CLTCL1P53675 1640 aa7.16□□□□□ -1.26
VPS50-220ENST00000544910 TRIM6-TRIM34B2RNG4 842 aa7.16□□□□□ -1.26
VPS50-220ENST00000544910 HSP90AA2PQ14568 343 aaPredicted RBP7.16□□□□□ -1.26
VPS50-220ENST00000544910 TXNDC2Q86VQ3 553 aa7.16□□□□□ -1.26
VPS50-220ENST00000544910 GCC1Q96CN9 775 aa7.16□□□□□ -1.26
VPS50-220ENST00000544910 POGZQ7Z3K3 1410 aa7.16□□□□□ -1.26
VPS50-220ENST00000544910 PLA2R1Q13018 1463 aa7.16□□□□□ -1.26
VPS50-220ENST00000544910 MAGI2Q86UL8 1455 aa7.16□□□□□ -1.26
VPS50-220ENST00000544910 MADDQ8WXG6 1647 aa7.16□□□□□ -1.26
VPS50-220ENST00000544910 ARAP3Q8WWN8 1544 aa7.16□□□□□ -1.26
VPS50-220ENST00000544910 GOLGA6L6A8MZA4 724 aa7.15□□□□□ -1.26
VPS50-220ENST00000544910 TWISTNBQ3B726 338 aaPredicted RBP7.15□□□□□ -1.26
VPS50-220ENST00000544910 TRHP20396 242 aaPredicted RBP7.15□□□□□ -1.26
VPS50-220ENST00000544910 ZNF692Q9BU19 519 aaPredicted RBP7.15□□□□□ -1.26
VPS50-220ENST00000544910 PTPRTO14522 1441 aa7.15□□□□□ -1.26
VPS50-220ENST00000544910 IDI1Q13907 227 aa7.15□□□□□ -1.27
VPS50-220ENST00000544910 LTV1Q96GA3 475 aaPredicted RBP7.15□□□□□ -1.27
VPS50-220ENST00000544910 CDC45O75419 566 aa7.15□□□□□ -1.27
VPS50-220ENST00000544910 NFE2L2Q16236 605 aa7.15□□□□□ -1.27
VPS50-220ENST00000544910 SKOR2Q2VWA4 1001 aaPredicted RBP7.15□□□□□ -1.27
VPS50-220ENST00000544910 PUS7Q96PZ0 661 aaKnown RBP7.15□□□□□ -1.27
VPS50-220ENST00000544910 KCNJ4P48050 445 aa7.14□□□□□ -1.27
VPS50-220ENST00000544910 KIAA1211Q6ZU35 1233 aa7.14□□□□□ -1.27
VPS50-220ENST00000544910 CARD14Q9BXL6 1004 aa7.14□□□□□ -1.27
VPS50-220ENST00000544910 ALDH1L2Q3SY69 923 aa7.14□□□□□ -1.27
VPS50-220ENST00000544910 GPATCH3Q96I76 525 aa7.14□□□□□ -1.27
VPS50-220ENST00000544910 TSPYL4Q9UJ04 414 aa7.14□□□□□ -1.27
VPS50-220ENST00000544910 E9PCH4 1651 aa7.14□□□□□ -1.27
VPS50-220ENST00000544910 CCDC27Q2M243 656 aa7.14□□□□□ -1.27
VPS50-220ENST00000544910 PPP6R1Q9UPN7 881 aa7.14□□□□□ -1.27
VPS50-220ENST00000544910 CEP152O94986 1710 aa7.14□□□□□ -1.27
VPS50-220ENST00000544910 TPRNQ4KMQ1 711 aa7.14□□□□□ -1.27
VPS50-220ENST00000544910 INTS3Q68E01 1043 aaKnown RBP7.14□□□□□ -1.27
VPS50-220ENST00000544910 ZNF428Q96B54 188 aa7.14□□□□□ -1.27
VPS50-220ENST00000544910 IL16Q14005 1332 aa7.13□□□□□ -1.27
VPS50-220ENST00000544910 NRDCO43847 1150 aa7.13□□□□□ -1.27
VPS50-220ENST00000544910 IGHDP01880 384 aa7.13□□□□□ -1.27
VPS50-220ENST00000544910 C1orf115Q9H7X2 142 aa7.13□□□□□ -1.27
VPS50-220ENST00000544910 MAP3K4Q9Y6R4 1608 aa7.13□□□□□ -1.27
VPS50-220ENST00000544910 TMEM57Q8N5G2 664 aa7.13□□□□□ -1.27
VPS50-220ENST00000544910 IFT57Q9NWB7 429 aa7.13□□□□□ -1.27
VPS50-220ENST00000544910 ZRSR1Q15695 479 aaKnown RBP7.13□□□□□ -1.27
VPS50-220ENST00000544910 UGGT1Q9NYU2 1555 aa7.13□□□□□ -1.27
VPS50-220ENST00000544910 HECW2Q9P2P5 1572 aa7.13□□□□□ -1.27
VPS50-220ENST00000544910 ERVK-7P63135 1459 aa7.13□□□□□ -1.27
VPS50-220ENST00000544910 FBXO31Q5XUX0 539 aaPredicted RBP7.13□□□□□ -1.27
VPS50-220ENST00000544910 HDAC5Q9UQL6 1122 aa7.13□□□□□ -1.27
VPS50-220ENST00000544910 WAPLQ7Z5K2 1190 aa7.12□□□□□ -1.27
VPS50-220ENST00000544910 CHD1LQ86WJ1 897 aa7.12□□□□□ -1.27
VPS50-220ENST00000544910 REC8O95072 547 aa7.12□□□□□ -1.27
VPS50-220ENST00000544910 NUDT16Q96DE0 195 aaKnown RBP7.12□□□□□ -1.27
VPS50-220ENST00000544910 ZFYVE9O95405 1425 aa7.12□□□□□ -1.27
VPS50-220ENST00000544910 FRAT2O75474 233 aaPredicted RBP7.12□□□□□ -1.27
VPS50-220ENST00000544910 SSH1Q8WYL5 1049 aa7.12□□□□□ -1.27
VPS50-220ENST00000544910 KDM2BQ8NHM5 1336 aa7.12□□□□□ -1.27
VPS50-220ENST00000544910 RRS1Q15050 365 aaKnown RBP7.12□□□□□ -1.27
VPS50-220ENST00000544910 GAS2L2Q8NHY3 880 aa7.12□□□□□ -1.27
VPS50-220ENST00000544910 RILPL2Q969X0 211 aa7.11□□□□□ -1.27
VPS50-220ENST00000544910 SYAP1Q96A49 352 aaPredicted RBP7.11□□□□□ -1.27
VPS50-220ENST00000544910 A0A1W2PP64 1363 aa7.11□□□□□ -1.27
VPS50-220ENST00000544910 NEO1Q92859 1461 aa7.11□□□□□ -1.27
VPS50-220ENST00000544910 EFCAB6Q5THR3 1501 aa7.11□□□□□ -1.27
VPS50-220ENST00000544910 C8orf34Q49A92 452 aa7.11□□□□□ -1.27
VPS50-220ENST00000544910 C1orf141Q5JVX7 400 aa7.11□□□□□ -1.27
VPS50-220ENST00000544910 WASLO00401 505 aaPredicted RBP7.11□□□□□ -1.27
VPS50-220ENST00000544910 CLASP1Q7Z460 1538 aa7.11□□□□□ -1.27
VPS50-220ENST00000544910 SULT6B1Q6IMI4 303 aa7.1□□□□□ -1.27
VPS50-220ENST00000544910 VSIG10Q8N0Z9 540 aa7.1□□□□□ -1.27
VPS50-220ENST00000544910 RIMS2Q9UQ26 1411 aa7.1□□□□□ -1.27
VPS50-220ENST00000544910 TRIM27P14373 513 aa7.1□□□□□ -1.27
VPS50-220ENST00000544910 FKBP5Q13451 457 aaPredicted RBP7.1□□□□□ -1.27
VPS50-220ENST00000544910 NPATQ14207 1427 aa7.1□□□□□ -1.27
VPS50-220ENST00000544910 YTHDC2Q9H6S0 1430 aaKnown RBP7.1□□□□□ -1.27
VPS50-220ENST00000544910 PPIP5K1Q6PFW1 1433 aa7.1□□□□□ -1.27
VPS50-220ENST00000544910 CSB-PGBD3P0DP91 1061 aa7.1□□□□□ -1.27
VPS50-220ENST00000544910 NOL8Q76FK4 1167 aaKnown RBP7.1□□□□□ -1.27
VPS50-220ENST00000544910 NME9Q86XW9 330 aa7.1□□□□□ -1.27
VPS50-220ENST00000544910 NECTIN2Q92692 538 aa7.1□□□□□ -1.27
VPS50-220ENST00000544910 ABCA6Q8N139 1617 aa7.1□□□□□ -1.27
VPS50-220ENST00000544910 KIAA2012Q0VF49 1180 aa7.1□□□□□ -1.27
VPS50-220ENST00000544910 CCDC30Q5VVM6 783 aa7.1□□□□□ -1.27
VPS50-220ENST00000544910 RNF17Q9BXT8 1623 aaKnown RBP7.09□□□□□ -1.27
VPS50-220ENST00000544910 SBNO2Q9Y2G9 1366 aa7.09□□□□□ -1.27
VPS50-220ENST00000544910 ABCA9Q8IUA7 1624 aa7.09□□□□□ -1.27
VPS50-220ENST00000544910 EMILIN1Q9Y6C2 1016 aa7.09□□□□□ -1.27
VPS50-220ENST00000544910 FYB1O15117 783 aa7.09□□□□□ -1.27
VPS50-220ENST00000544910 EIF2S2P20042 333 aaKnown RBP7.09□□□□□ -1.27
VPS50-220ENST00000544910 TNNT3P45378 269 aaPredicted RBP7.09□□□□□ -1.27
VPS50-220ENST00000544910 FGD1P98174 961 aa7.09□□□□□ -1.27
VPS50-220ENST00000544910 SPINK5Q9NQ38 1064 aaPredicted RBP7.09□□□□□ -1.27
VPS50-220ENST00000544910 CCDC61Q9Y6R9 512 aa7.09□□□□□ -1.27
VPS50-220ENST00000544910 CCT4P50991 539 aaKnown RBP7.08□□□□□ -1.28
VPS50-220ENST00000544910 QRICH2Q9H0J4 1663 aa7.08□□□□□ -1.28
VPS50-220ENST00000544910 TEFQ10587 303 aa7.08□□□□□ -1.28
VPS50-220ENST00000544910 CSPP1Q1MSJ5 1256 aa7.08□□□□□ -1.28
VPS50-220ENST00000544910 DDX49Q9Y6V7 483 aaKnown RBP7.08□□□□□ -1.28
VPS50-220ENST00000544910 HDAC1Q13547 482 aaPredicted RBP7.08□□□□□ -1.28
VPS50-220ENST00000544910 INO80Q9ULG1 1556 aaPredicted RBP7.08□□□□□ -1.28
VPS50-220ENST00000544910 IQGAP1P46940 1657 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 138 ms