RNA–Protein interactions for RNA: ENST00000541342.2

SPIDR-227, Transcript of scaffold protein involved in DNA repair, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SPIDR, Length 3,311 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-227ENST00000541342 CPSF1Q10570 1443 aaKnown RBP22.44■■□□□ 1.18
SPIDR-227ENST00000541342 C20orf194Q5TEA3 1177 aa22.44■■□□□ 1.18
SPIDR-227ENST00000541342 NUDT16Q96DE0 195 aaKnown RBP22.44■■□□□ 1.18
SPIDR-227ENST00000541342 TBX22Q9Y458 520 aa22.43■■□□□ 1.18
SPIDR-227ENST00000541342 DIP2AQ14689 1571 aa22.43■■□□□ 1.18
SPIDR-227ENST00000541342 CDC42BPGQ6DT37 1551 aa22.42■■□□□ 1.18
SPIDR-227ENST00000541342 PRR36Q9H6K5 1346 aa22.42■■□□□ 1.18
SPIDR-227ENST00000541342 ZNF142P52746 1687 aaPredicted RBP22.41■■□□□ 1.18
SPIDR-227ENST00000541342 APAF1O14727 1248 aa22.41■■□□□ 1.18
SPIDR-227ENST00000541342 AMOTL2Q9Y2J4 779 aa22.41■■□□□ 1.18
SPIDR-227ENST00000541342 MON2Q7Z3U7 1717 aa22.4■■□□□ 1.18
SPIDR-227ENST00000541342 AKAP12Q02952 1782 aa22.4■■□□□ 1.18
SPIDR-227ENST00000541342 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.39■■□□□ 1.183e-6■■■□□ 16.7
SPIDR-227ENST00000541342 CCDC61Q9Y6R9 512 aa22.39■■□□□ 1.17
SPIDR-227ENST00000541342 CFAP53Q96M91 514 aa22.38■■□□□ 1.17
SPIDR-227ENST00000541342 ITSN1Q15811 1721 aa22.38■■□□□ 1.17
SPIDR-227ENST00000541342 TOPAZ1Q8N9V7 1692 aa22.38■■□□□ 1.17
SPIDR-227ENST00000541342 XRN1Q8IZH2 1706 aaKnown RBP22.38■■□□□ 1.17
SPIDR-227ENST00000541342 COL3A1P02461 1466 aaPredicted RBP22.37■■□□□ 1.17
SPIDR-227ENST00000541342 PTCH1Q13635 1447 aa22.37■■□□□ 1.17
SPIDR-227ENST00000541342 KDM2BQ8NHM5 1336 aa22.37■■□□□ 1.17
SPIDR-227ENST00000541342 EDC4Q6P2E9 1401 aaKnown RBP22.37■■□□□ 1.17
SPIDR-227ENST00000541342 DUSP27Q5VZP5 1158 aa22.36■■□□□ 1.17
SPIDR-227ENST00000541342 RTL5Q5HYW3 569 aaPredicted RBP22.36■■□□□ 1.17
SPIDR-227ENST00000541342 IQSEC2Q5JU85 1478 aa22.34■■□□□ 1.17
SPIDR-227ENST00000541342 GOLGA2Q08379 1002 aa22.33■■□□□ 1.17
SPIDR-227ENST00000541342 SETD1BQ9UPS6 1966 aaKnown RBP22.33■■□□□ 1.17
SPIDR-227ENST00000541342 LAS1LQ9Y4W2 734 aaKnown RBP22.33■■□□□ 1.16
SPIDR-227ENST00000541342 NME9Q86XW9 330 aa22.31■■□□□ 1.16
SPIDR-227ENST00000541342 NKTRP30414 1462 aaKnown RBP22.31■■□□□ 1.16
SPIDR-227ENST00000541342 MAP2P11137 1827 aaKnown RBP22.31■■□□□ 1.16
SPIDR-227ENST00000541342 NUTM2FA1L443 756 aa22.31■■□□□ 1.16
SPIDR-227ENST00000541342 FBLN1P23142 703 aa22.31■■□□□ 1.16
SPIDR-227ENST00000541342 RUNDC1Q96C34 613 aa22.31■■□□□ 1.16
SPIDR-227ENST00000541342 SPINK5Q9NQ38 1064 aaPredicted RBP22.31■■□□□ 1.16
SPIDR-227ENST00000541342 SLFN5Q08AF3 891 aa22.3■■□□□ 1.16
SPIDR-227ENST00000541342 ZRANB1Q9UGI0 708 aa22.3■■□□□ 1.16
SPIDR-227ENST00000541342 NRKQ7Z2Y5 1582 aa22.3■■□□□ 1.16
SPIDR-227ENST00000541342 DMRT2Q9Y5R5 561 aa22.3■■□□□ 1.16
SPIDR-227ENST00000541342 PNPLA6Q8IY17 1366 aa22.29■■□□□ 1.16
SPIDR-227ENST00000541342 TRMT2AQ8IZ69 625 aaKnown RBP22.29■■□□□ 1.16
SPIDR-227ENST00000541342 RGPD8O14715 1765 aaPredicted RBP22.29■■□□□ 1.16
SPIDR-227ENST00000541342 U2AF1L5P0DN76 240 aaPredicted RBP22.28■■□□□ 1.16
SPIDR-227ENST00000541342 KCNA6P17658 529 aa22.28■■□□□ 1.16
SPIDR-227ENST00000541342 U2AF1Q01081 240 aaKnown RBP eCLIP22.28■■□□□ 1.16
SPIDR-227ENST00000541342 ANKLE2Q86XL3 938 aa22.27■■□□□ 1.16
SPIDR-227ENST00000541342 NGEFQ8N5V2 710 aa22.27■■□□□ 1.16
SPIDR-227ENST00000541342 CHD2O14647 1828 aaKnown RBP22.27■■□□□ 1.16
SPIDR-227ENST00000541342 PIK3R4Q99570 1358 aa22.27■■□□□ 1.16
SPIDR-227ENST00000541342 TCP11L2Q8N4U5 519 aa22.27■■□□□ 1.16
SPIDR-227ENST00000541342 ZNF692Q9BU19 519 aaPredicted RBP22.26■■□□□ 1.15
SPIDR-227ENST00000541342 POLKQ9UBT6 870 aa22.26■■□□□ 1.15
SPIDR-227ENST00000541342 WWC1Q8IX03 1113 aa22.26■■□□□ 1.15
SPIDR-227ENST00000541342 RRP7AQ9Y3A4 280 aaKnown RBP22.26■■□□□ 1.15
SPIDR-227ENST00000541342 ACEP12821 1306 aa22.26■■□□□ 1.15
SPIDR-227ENST00000541342 PLEKHG3A1L390 1219 aa22.26■■□□□ 1.15
SPIDR-227ENST00000541342 NEFMP07197 916 aa22.25■■□□□ 1.15
SPIDR-227ENST00000541342 NEUROD2Q15784 382 aa22.23■■□□□ 1.15
SPIDR-227ENST00000541342 U2SURPO15042 1029 aaKnown RBP22.23■■□□□ 1.15
SPIDR-227ENST00000541342 PHF23Q9BUL5 403 aaPredicted RBP22.23■■□□□ 1.15
SPIDR-227ENST00000541342 CENPQQ7L2Z9 268 aaPredicted RBP22.23■■□□□ 1.15
SPIDR-227ENST00000541342 PLEKHF1Q96S99 279 aa22.22■■□□□ 1.15
SPIDR-227ENST00000541342 USP6P35125 1406 aa22.22■■□□□ 1.15
SPIDR-227ENST00000541342 DIAPH1O60610 1272 aaKnown RBP22.21■■□□□ 1.15
SPIDR-227ENST00000541342 USP35Q9P2H5 1018 aa22.21■■□□□ 1.15
SPIDR-227ENST00000541342 E9PSI1 815 aa22.21■■□□□ 1.15
SPIDR-227ENST00000541342 EMILIN1Q9Y6C2 1016 aa22.21■■□□□ 1.15
SPIDR-227ENST00000541342 TTC21BQ7Z4L5 1316 aa22.21■■□□□ 1.15
SPIDR-227ENST00000541342 COG3Q96JB2 828 aa22.2■■□□□ 1.14
SPIDR-227ENST00000541342 AATKQ6ZMQ8 1374 aa22.2■■□□□ 1.14
SPIDR-227ENST00000541342 PPM1GO15355 546 aaPredicted RBP22.2■■□□□ 1.14
SPIDR-227ENST00000541342 C8orf34Q49A92 452 aa22.19■■□□□ 1.14
SPIDR-227ENST00000541342 FMN2Q9NZ56 1722 aa22.19■■□□□ 1.14
SPIDR-227ENST00000541342 NALCNQ8IZF0 1738 aa22.19■■□□□ 1.14
SPIDR-227ENST00000541342 SSH2Q76I76 1423 aa22.18■■□□□ 1.14
SPIDR-227ENST00000541342 PMFBP1Q8TBY8 1022 aa22.18■■□□□ 1.14
SPIDR-227ENST00000541342 CDK12Q9NYV4 1490 aaPredicted RBP22.17■■□□□ 1.14
SPIDR-227ENST00000541342 CCDC27Q2M243 656 aa22.17■■□□□ 1.14
SPIDR-227ENST00000541342 DDRGK1Q96HY6 314 aa22.16■■□□□ 1.14
SPIDR-227ENST00000541342 OVOS2A0A0J9YW53 1432 aa22.16■■□□□ 1.14
SPIDR-227ENST00000541342 OVOS2Q6IE36 1432 aa22.16■■□□□ 1.14
SPIDR-227ENST00000541342 RRS1Q15050 365 aaKnown RBP22.15■■□□□ 1.14
SPIDR-227ENST00000541342 NPHP4O75161 1426 aaPredicted RBP22.15■■□□□ 1.14
SPIDR-227ENST00000541342 LRRC7Q96NW7 1537 aa22.15■■□□□ 1.14
SPIDR-227ENST00000541342 SLC4A3P48751 1232 aa22.14■■□□□ 1.13
SPIDR-227ENST00000541342 NCBP3Q53F19 620 aaKnown RBP22.14■■□□□ 1.13
SPIDR-227ENST00000541342 ANKARQ7Z5J8 1434 aa22.14■■□□□ 1.13
SPIDR-227ENST00000541342 WDR63Q8IWG1 891 aa22.13■■□□□ 1.13
SPIDR-227ENST00000541342 FAM161AQ3B820 660 aa22.13■■□□□ 1.13
SPIDR-227ENST00000541342 RBM33Q96EV2 1170 aaKnown RBP22.13■■□□□ 1.13
SPIDR-227ENST00000541342 BCAR3O75815 825 aa22.12■■□□□ 1.13
SPIDR-227ENST00000541342 IL13P35225 146 aa22.11■■□□□ 1.13
SPIDR-227ENST00000541342 TMPOP42166 694 aaKnown RBP22.11■■□□□ 1.13
SPIDR-227ENST00000541342 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.11■■□□□ 1.13
SPIDR-227ENST00000541342 RSPH6AQ9H0K4 717 aa22.1■■□□□ 1.13
SPIDR-227ENST00000541342 IL27Q8NEV9 243 aa22.1■■□□□ 1.13
SPIDR-227ENST00000541342 VIRMAQ69YN4 1812 aaKnown RBP22.1■■□□□ 1.13
SPIDR-227ENST00000541342 MAPK8IP3Q9UPT6 1336 aa22.1■■□□□ 1.13
SPIDR-227ENST00000541342 NGDNQ8NEJ9 315 aaKnown RBP22.09■■□□□ 1.13
SPIDR-227ENST00000541342 TRIM35Q9UPQ4 493 aa22.09■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms