RNA–Protein interactions for RNA: ENST00000540904.1

SNHG1-215, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 5

Gene SNHG1, Length 594 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-215ENST00000540904 ITSN1Q15811 1721 aa12.99□□□□□ -0.33
SNHG1-215ENST00000540904 AFF2P51816 1311 aa12.99□□□□□ -0.33
SNHG1-215ENST00000540904 POTEAQ6S8J7 498 aa12.99□□□□□ -0.33
SNHG1-215ENST00000540904 TESK2Q96S53 571 aa12.99□□□□□ -0.33
SNHG1-215ENST00000540904 TOPAZ1Q8N9V7 1692 aa12.99□□□□□ -0.33
SNHG1-215ENST00000540904 ATAD2Q6PL18 1390 aa12.98□□□□□ -0.33
SNHG1-215ENST00000540904 ZNF772Q68DY9 489 aaPredicted RBP12.98□□□□□ -0.33
SNHG1-215ENST00000540904 COL22A1Q8NFW1 1626 aaPredicted RBP12.98□□□□□ -0.33
SNHG1-215ENST00000540904 SLC24A1O60721 1099 aa12.96□□□□□ -0.33
SNHG1-215ENST00000540904 NUTM2GQ5VZR2 741 aa12.96□□□□□ -0.33
SNHG1-215ENST00000540904 TMC1Q8TDI8 760 aa12.96□□□□□ -0.33
SNHG1-215ENST00000540904 TRPM3Q9HCF6 1732 aaPredicted RBP12.96□□□□□ -0.34
SNHG1-215ENST00000540904 ABTB2Q8N961 1025 aa12.95□□□□□ -0.34
SNHG1-215ENST00000540904 CNKSR2Q8WXI2 1034 aa12.95□□□□□ -0.34
SNHG1-215ENST00000540904 TMF1P82094 1093 aa12.94□□□□□ -0.34
SNHG1-215ENST00000540904 ZNF692Q9BU19 519 aaPredicted RBP12.94□□□□□ -0.34
SNHG1-215ENST00000540904 USP21Q9UK80 565 aa12.94□□□□□ -0.34
SNHG1-215ENST00000540904 USP6P35125 1406 aa12.94□□□□□ -0.34
SNHG1-215ENST00000540904 FNBP4Q8N3X1 1017 aaPredicted RBP12.93□□□□□ -0.34
SNHG1-215ENST00000540904 PUS7Q96PZ0 661 aaKnown RBP12.93□□□□□ -0.34
SNHG1-215ENST00000540904 SLC12A5Q9H2X9 1139 aa12.93□□□□□ -0.34
SNHG1-215ENST00000540904 QTRT2Q9H974 415 aaKnown RBP12.93□□□□□ -0.34
SNHG1-215ENST00000540904 ALS2Q96Q42 1657 aa12.93□□□□□ -0.34
SNHG1-215ENST00000540904 BRD4O60885 1362 aaPredicted RBP12.92□□□□□ -0.34
SNHG1-215ENST00000540904 KTN1Q86UP2 1357 aaKnown RBP12.92□□□□□ -0.34
SNHG1-215ENST00000540904 CPSF1Q10570 1443 aaKnown RBP12.91□□□□□ -0.34
SNHG1-215ENST00000540904 FAM83GA6ND36 823 aa12.91□□□□□ -0.34
SNHG1-215ENST00000540904 RXRBP28702 533 aa12.91□□□□□ -0.34
SNHG1-215ENST00000540904 EIF4G2P78344 907 aaKnown RBP eCLIP12.91□□□□□ -0.34
SNHG1-215ENST00000540904 HDGFL2Q7Z4V5 671 aaPredicted RBP12.91□□□□□ -0.34
SNHG1-215ENST00000540904 RNF39Q9H2S5 420 aa12.91□□□□□ -0.34
SNHG1-215ENST00000540904 NLRP6P59044 892 aa12.9□□□□□ -0.34
SNHG1-215ENST00000540904 NLRP13Q86W25 1043 aa12.9□□□□□ -0.34
SNHG1-215ENST00000540904 TERF2IPQ9NYB0 399 aa12.9□□□□□ -0.34
SNHG1-215ENST00000540904 TTC21BQ7Z4L5 1316 aa12.89□□□□□ -0.35
SNHG1-215ENST00000540904 SSH2Q76I76 1423 aa12.89□□□□□ -0.35
SNHG1-215ENST00000540904 HSPA5P11021 654 aaKnown RBP12.89□□□□□ -0.35
SNHG1-215ENST00000540904 ZC3H6P61129 1189 aaKnown RBP12.89□□□□□ -0.35
SNHG1-215ENST00000540904 CDCA8Q53HL2 280 aa12.89□□□□□ -0.35
SNHG1-215ENST00000540904 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.89□□□□□ -0.35
SNHG1-215ENST00000540904 PRDM11Q9NQV5 511 aa12.89□□□□□ -0.35
SNHG1-215ENST00000540904 TRPC5Q9UL62 973 aaPredicted RBP12.89□□□□□ -0.35
SNHG1-215ENST00000540904 BCL9LQ86UU0 1499 aa12.89□□□□□ -0.35
SNHG1-215ENST00000540904 SOCS7O14512 581 aa12.88□□□□□ -0.35
SNHG1-215ENST00000540904 UNC5CLQ8IV45 518 aa12.88□□□□□ -0.35
SNHG1-215ENST00000540904 RNF216Q9NWF9 866 aaPredicted RBP12.88□□□□□ -0.35
SNHG1-215ENST00000540904 NINLQ9Y2I6 1382 aa12.88□□□□□ -0.35
SNHG1-215ENST00000540904 CD163L1Q9NR16 1453 aa12.88□□□□□ -0.35
SNHG1-215ENST00000540904 USP19O94966 1318 aa12.88□□□□□ -0.35
SNHG1-215ENST00000540904 TTC21AQ8NDW8 1320 aa12.88□□□□□ -0.35
SNHG1-215ENST00000540904 A0A1W2PP64 1363 aa12.87□□□□□ -0.35
SNHG1-215ENST00000540904 KIAA0232Q92628 1395 aa12.87□□□□□ -0.35
SNHG1-215ENST00000540904 GCP02774 474 aa12.87□□□□□ -0.35
SNHG1-215ENST00000540904 RBM6P78332 1123 aaKnown RBP12.87□□□□□ -0.35
SNHG1-215ENST00000540904 CHRNA2Q15822 529 aa12.87□□□□□ -0.35
SNHG1-215ENST00000540904 ABCA3Q99758 1704 aa12.87□□□□□ -0.35
SNHG1-215ENST00000540904 SLIT2O94813 1529 aa12.87□□□□□ -0.35
SNHG1-215ENST00000540904 POLR3GLQ9BT43 218 aa12.86□□□□□ -0.35
SNHG1-215ENST00000540904 BTG4Q9NY30 223 aa12.86□□□□□ -0.35
SNHG1-215ENST00000540904 ATRNO75882 1429 aa12.86□□□□□ -0.35
SNHG1-215ENST00000540904 MARF1Q9Y4F3 1742 aaKnown RBP12.85□□□□□ -0.35
SNHG1-215ENST00000540904 NME9Q86XW9 330 aa12.85□□□□□ -0.35
SNHG1-215ENST00000540904 CCDC9Q9Y3X0 531 aaKnown RBP12.85□□□□□ -0.35
SNHG1-215ENST00000540904 ZBTB7CA1YPR0 619 aa12.84□□□□□ -0.35
SNHG1-215ENST00000540904 SOX12O15370 315 aa12.84□□□□□ -0.35
SNHG1-215ENST00000540904 GJD4Q96KN9 370 aaPredicted RBP12.84□□□□□ -0.35
SNHG1-215ENST00000540904 ZRANB1Q9UGI0 708 aa12.84□□□□□ -0.35
SNHG1-215ENST00000540904 EDC4Q6P2E9 1401 aaKnown RBP12.84□□□□□ -0.35
SNHG1-215ENST00000540904 AKAP12Q02952 1782 aa12.84□□□□□ -0.35
SNHG1-215ENST00000540904 ANKRD36BQ8N2N9 1353 aa12.83□□□□□ -0.36
SNHG1-215ENST00000540904 CRYBG1Q9Y4K1 1723 aa12.83□□□□□ -0.36
SNHG1-215ENST00000540904 VPS72Q15906 364 aa12.83□□□□□ -0.36
SNHG1-215ENST00000540904 PHRF1Q9P1Y6 1649 aaKnown RBP12.83□□□□□ -0.36
SNHG1-215ENST00000540904 PIK3C2AO00443 1686 aa12.83□□□□□ -0.36
SNHG1-215ENST00000540904 CPDO75976 1380 aa12.82□□□□□ -0.36
SNHG1-215ENST00000540904 NRKQ7Z2Y5 1582 aa12.82□□□□□ -0.36
SNHG1-215ENST00000540904 STRN4Q9NRL3 753 aa12.82□□□□□ -0.36
SNHG1-215ENST00000540904 MON2Q7Z3U7 1717 aa12.82□□□□□ -0.36
SNHG1-215ENST00000540904 RGS12O14924 1447 aa12.81□□□□□ -0.36
SNHG1-215ENST00000540904 CDK12Q9NYV4 1490 aaPredicted RBP12.81□□□□□ -0.36
SNHG1-215ENST00000540904 KCNH5Q8NCM2 988 aa12.81□□□□□ -0.36
SNHG1-215ENST00000540904 COL14A1Q05707 1796 aaKnown RBP12.81□□□□□ -0.36
SNHG1-215ENST00000540904 PLCH1Q4KWH8 1693 aa12.8□□□□□ -0.36
SNHG1-215ENST00000540904 SLIT3O75094 1523 aa12.8□□□□□ -0.36
SNHG1-215ENST00000540904 EVA1CP58658 441 aa12.8□□□□□ -0.36
SNHG1-215ENST00000540904 USP31Q70CQ4 1352 aa12.8□□□□□ -0.36
SNHG1-215ENST00000540904 C11orf95C9JLR9 678 aaPredicted RBP12.79□□□□□ -0.36
SNHG1-215ENST00000540904 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.79□□□□□ -0.36
SNHG1-215ENST00000540904 NWD2Q9ULI1 1742 aa12.79□□□□□ -0.36
SNHG1-215ENST00000540904 ARHGEF25Q86VW2 580 aa12.78□□□□□ -0.36
SNHG1-215ENST00000540904 COG3Q96JB2 828 aa12.78□□□□□ -0.36
SNHG1-215ENST00000540904 CARD14Q9BXL6 1004 aa12.78□□□□□ -0.36
SNHG1-215ENST00000540904 A0A0G2JS52 829 aa12.77□□□□□ -0.37
SNHG1-215ENST00000540904 MYT1Q01538 1121 aa12.77□□□□□ -0.37
SNHG1-215ENST00000540904 FAM98CQ17RN3 349 aaKnown RBP12.77□□□□□ -0.37
SNHG1-215ENST00000540904 USP35Q9P2H5 1018 aa12.77□□□□□ -0.37
SNHG1-215ENST00000540904 SPATA31A5Q5VU36 1347 aa12.77□□□□□ -0.37
SNHG1-215ENST00000540904 SPATA31A7Q8IWB4 1347 aa12.77□□□□□ -0.37
SNHG1-215ENST00000540904 AATKQ6ZMQ8 1374 aa12.77□□□□□ -0.37
SNHG1-215ENST00000540904 GLI3P10071 1580 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms