RNA–Protein interactions for RNA: ENST00000540756.5

TTC3-225, Transcript of tetratricopeptide repeat domain 3, human

TSL 2 BASIC

Gene TTC3, Length 2,025 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TTC3-225	ENST00000540756	USP6	P35125	1406 aa		32.78	■■■□□ 2.84
TTC3-225	ENST00000540756	C14orf37	Q86TY3	774 aa		32.78	■■■□□ 2.84
TTC3-225	ENST00000540756	STRC	Q7RTU9	1775 aa		32.78	■■■□□ 2.84
TTC3-225	ENST00000540756	ANKAR	Q7Z5J8	1434 aa		32.78	■■■□□ 2.84
TTC3-225	ENST00000540756	PROSER2	Q86WR7	435 aa	Predicted RBP	32.77	■■■□□ 2.84
TTC3-225	ENST00000540756	TTC21B	Q7Z4L5	1316 aa		32.77	■■■□□ 2.84
TTC3-225	ENST00000540756	INSR	P06213	1382 aa		32.76	■■■□□ 2.83
TTC3-225	ENST00000540756	NGDN	Q8NEJ9	315 aa	Known RBP	32.75	■■■□□ 2.83
TTC3-225	ENST00000540756	CCDC146	Q8IYE0	955 aa		32.75	■■■□□ 2.83
TTC3-225	ENST00000540756	SSH2	Q76I76	1423 aa		32.72	■■■□□ 2.83
TTC3-225	ENST00000540756	MAP2	P11137	1827 aa	Known RBP	32.71	■■■□□ 2.83
TTC3-225	ENST00000540756	CFAP53	Q96M91	514 aa		32.7	■■■□□ 2.83
TTC3-225	ENST00000540756	COG3	Q96JB2	828 aa		32.7	■■■□□ 2.82
TTC3-225	ENST00000540756	POLK	Q9UBT6	870 aa		32.68	■■■□□ 2.82
TTC3-225	ENST00000540756	COL3A1	P02461	1466 aa	Predicted RBP	32.66	■■■□□ 2.82
TTC3-225	ENST00000540756	PPM1G	O15355	546 aa	Predicted RBP	32.65	■■■□□ 2.82
TTC3-225	ENST00000540756	PHF8	Q9UPP1	1060 aa		32.64	■■■□□ 2.82
TTC3-225	ENST00000540756	EMILIN1	Q9Y6C2	1016 aa		32.64	■■■□□ 2.82
TTC3-225	ENST00000540756	TMEM94	Q12767	1356 aa		32.64	■■■□□ 2.82
TTC3-225	ENST00000540756	ESCO1	Q5FWF5	840 aa		32.63	■■■□□ 2.81
TTC3-225	ENST00000540756	RRS1	Q15050	365 aa	Known RBP	32.62	■■■□□ 2.81
TTC3-225	ENST00000540756	OVOS2	A0A0J9YW53	1432 aa		32.61	■■■□□ 2.81
TTC3-225	ENST00000540756	OVOS2	Q6IE36	1432 aa		32.61	■■■□□ 2.81
TTC3-225	ENST00000540756	ORAI2	Q96SN7	254 aa		32.61	■■■□□ 2.81
TTC3-225	ENST00000540756	PNPLA6	Q8IY17	1366 aa		32.6	■■■□□ 2.81
TTC3-225	ENST00000540756	APAF1	O14727	1248 aa		32.6	■■■□□ 2.81
TTC3-225	ENST00000540756	C19orf44	Q9H6X5	657 aa		32.59	■■■□□ 2.81
TTC3-225	ENST00000540756	TTC21A	Q8NDW8	1320 aa		32.58	■■■□□ 2.81
TTC3-225	ENST00000540756	CDCA7L	Q96GN5	454 aa		32.58	■■■□□ 2.81
TTC3-225	ENST00000540756	AATK	Q6ZMQ8	1374 aa		32.57	■■■□□ 2.8
TTC3-225	ENST00000540756	PIK3C2A	O00443	1686 aa		32.57	■■■□□ 2.8
TTC3-225	ENST00000540756	U2AF1L5	P0DN76	240 aa	Predicted RBP	32.57	■■■□□ 2.8
TTC3-225	ENST00000540756	U2AF1	Q01081	240 aa	Known RBP eCLIP	32.57	■■■□□ 2.8
TTC3-225	ENST00000540756	SUPT16H	Q9Y5B9	1047 aa	Known RBP	32.57	■■■□□ 2.8
TTC3-225	ENST00000540756	SMG6	Q86US8	1419 aa	Known RBP	32.57	■■■□□ 2.8
TTC3-225	ENST00000540756	U2SURP	O15042	1029 aa	Known RBP	32.55	■■■□□ 2.8
TTC3-225	ENST00000540756	SOX12	O15370	315 aa		32.55	■■■□□ 2.8
TTC3-225	ENST00000540756	NUTM2G	Q5VZR2	741 aa		32.55	■■■□□ 2.8
TTC3-225	ENST00000540756	NUDC	Q9Y266	331 aa		32.55	■■■□□ 2.8
TTC3-225	ENST00000540756	DIAPH1	O60610	1272 aa	Known RBP	32.53	■■■□□ 2.8
TTC3-225	ENST00000540756	PAK3	O75914	559 aa	Predicted RBP	32.53	■■■□□ 2.8
TTC3-225	ENST00000540756	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	32.53	■■■□□ 2.8
TTC3-225	ENST00000540756	XIRP1	Q702N8	1843 aa	Known RBP	32.5	■■■□□ 2.79
TTC3-225	ENST00000540756	USP31	Q70CQ4	1352 aa		32.5	■■■□□ 2.79
TTC3-225	ENST00000540756	FOXO3	O43524	673 aa		32.5	■■■□□ 2.79
TTC3-225	ENST00000540756	C1orf167	Q5SNV9	1468 aa		32.49	■■■□□ 2.79
TTC3-225	ENST00000540756	XPC	Q01831	940 aa	Predicted RBP	32.49	■■■□□ 2.79
TTC3-225	ENST00000540756	RUNDC1	Q96C34	613 aa		32.49	■■■□□ 2.79
TTC3-225	ENST00000540756	NLRP6	P59044	892 aa		32.48	■■■□□ 2.79
TTC3-225	ENST00000540756	PSME1	Q06323	249 aa		32.48	■■■□□ 2.79
TTC3-225	ENST00000540756	MARF1	Q9Y4F3	1742 aa	Known RBP	32.48	■■■□□ 2.79
TTC3-225	ENST00000540756	ABTB2	Q8N961	1025 aa		32.48	■■■□□ 2.79
TTC3-225	ENST00000540756	ZNF521	Q96K83	1311 aa		32.47	■■■□□ 2.79
TTC3-225	ENST00000540756	CDK12	Q9NYV4	1490 aa	Predicted RBP	32.47	■■■□□ 2.79
TTC3-225	ENST00000540756	ATF3	P18847	181 aa		32.47	■■■□□ 2.79
TTC3-225	ENST00000540756	RRP7A	Q9Y3A4	280 aa	Known RBP	32.46	■■■□□ 2.79
TTC3-225	ENST00000540756	PDE3B	Q13370	1112 aa		32.45	■■■□□ 2.79
TTC3-225	ENST00000540756	TCP11L2	Q8N4U5	519 aa		32.44	■■■□□ 2.78
TTC3-225	ENST00000540756	MST1R	Q04912	1400 aa		32.44	■■■□□ 2.78
TTC3-225	ENST00000540756	NEUROD2	Q15784	382 aa		32.44	■■■□□ 2.78
TTC3-225	ENST00000540756	NCOA3	Q9Y6Q9	1424 aa		32.44	■■■□□ 2.78
TTC3-225	ENST00000540756	PEAK1	Q9H792	1746 aa		32.44	■■■□□ 2.78
TTC3-225	ENST00000540756	IQSEC2	Q5JU85	1478 aa		32.43	■■■□□ 2.78
TTC3-225	ENST00000540756	IL13	P35225	146 aa		32.43	■■■□□ 2.78
TTC3-225	ENST00000540756	FKBP8	Q14318	412 aa		32.43	■■■□□ 2.78
TTC3-225	ENST00000540756	PLEKHF1	Q96S99	279 aa		32.42	■■■□□ 2.78
TTC3-225	ENST00000540756	LRRC7	Q96NW7	1537 aa		32.42	■■■□□ 2.78
TTC3-225	ENST00000540756	MAP3K19	Q56UN5	1328 aa		32.4	■■■□□ 2.78
TTC3-225	ENST00000540756	DMRT2	Q9Y5R5	561 aa		32.39	■■■□□ 2.78
TTC3-225	ENST00000540756	DCC	P43146	1447 aa		32.39	■■■□□ 2.78
TTC3-225	ENST00000540756	HSP90AB2P	Q58FF8	381 aa		32.38	■■■□□ 2.77
TTC3-225	ENST00000540756	DDX17	Q92841	729 aa	Known RBP	32.38	■■■□□ 2.77
TTC3-225	ENST00000540756	MSH6	P52701	1360 aa		32.37	■■■□□ 2.77
TTC3-225	ENST00000540756	IRX6	P78412	446 aa	Predicted RBP	32.37	■■■□□ 2.77
TTC3-225	ENST00000540756	SPINK5	Q9NQ38	1064 aa	Predicted RBP	32.37	■■■□□ 2.77
TTC3-225	ENST00000540756	HMOX1	P09601	288 aa		32.36	■■■□□ 2.77
TTC3-225	ENST00000540756	CADPS2	Q86UW7	1296 aa		32.36	■■■□□ 2.77
TTC3-225	ENST00000540756	USP54	Q70EL1	1684 aa		32.36	■■■□□ 2.77
TTC3-225	ENST00000540756	GOLGA2	Q08379	1002 aa		32.35	■■■□□ 2.77
TTC3-225	ENST00000540756	WWC1	Q8IX03	1113 aa		32.34	■■■□□ 2.77
TTC3-225	ENST00000540756	KIF1A	Q12756	1690 aa		32.34	■■■□□ 2.77
TTC3-225	ENST00000540756	EIF4A2	Q14240	407 aa	Known RBP	32.33	■■■□□ 2.77
TTC3-225	ENST00000540756	KRT28	Q7Z3Y7	464 aa		32.33	■■■□□ 2.77
TTC3-225	ENST00000540756	RSPH6A	Q9H0K4	717 aa		32.33	■■■□□ 2.77
TTC3-225	ENST00000540756	NEFL	P07196	543 aa		32.33	■■■□□ 2.77
TTC3-225	ENST00000540756	PLEKHG5	O94827	1062 aa		32.31	■■■□□ 2.76
TTC3-225	ENST00000540756	TRPM3	Q9HCF6	1732 aa	Predicted RBP	32.31	■■■□□ 2.76
TTC3-225	ENST00000540756	FCHSD2	O94868	740 aa		32.3	■■■□□ 2.76
TTC3-225	ENST00000540756	PRKAR2B	P31323	418 aa		32.3	■■■□□ 2.76
TTC3-225	ENST00000540756	DUSP27	Q5VZP5	1158 aa		32.3	■■■□□ 2.76
TTC3-225	ENST00000540756	SLFN5	Q08AF3	891 aa		32.29	■■■□□ 2.76
TTC3-225	ENST00000540756	LMOD2	Q6P5Q4	547 aa		32.28	■■■□□ 2.76
TTC3-225	ENST00000540756	NGEF	Q8N5V2	710 aa		32.28	■■■□□ 2.76
TTC3-225	ENST00000540756	PHF23	Q9BUL5	403 aa	Predicted RBP	32.28	■■■□□ 2.76
TTC3-225	ENST00000540756	SBNO1	A3KN83	1393 aa		32.27	■■■□□ 2.76
TTC3-225	ENST00000540756	MAPK8IP3	Q9UPT6	1336 aa		32.27	■■■□□ 2.76
TTC3-225	ENST00000540756	AMPH	P49418	695 aa		32.27	■■■□□ 2.76
TTC3-225	ENST00000540756	TMPO	P42166	694 aa	Known RBP	32.26	■■■□□ 2.76
TTC3-225	ENST00000540756	PHACTR3	Q96KR7	559 aa		32.26	■■■□□ 2.76
TTC3-225	ENST00000540756	FLT4	P35916	1363 aa		32.25	■■■□□ 2.75

Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms