RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 LRRC59Q96AG4 307 aaKnown RBP25.96■■□□□ 1.75
TNFRSF1A-213ENST00000540022 ZNF692Q9BU19 519 aaPredicted RBP25.96■■□□□ 1.75
TNFRSF1A-213ENST00000540022 NSD3Q9BZ95 1437 aa25.96■■□□□ 1.75
TNFRSF1A-213ENST00000540022 KTN1Q86UP2 1357 aaKnown RBP25.96■■□□□ 1.75
TNFRSF1A-213ENST00000540022 SOS2Q07890 1332 aaPredicted RBP25.95■■□□□ 1.74
TNFRSF1A-213ENST00000540022 KNSTRNQ9Y448 316 aa25.94■■□□□ 1.74
TNFRSF1A-213ENST00000540022 PNPLA6Q8IY17 1366 aa25.92■■□□□ 1.74
TNFRSF1A-213ENST00000540022 KIF1AQ12756 1690 aa25.92■■□□□ 1.74
TNFRSF1A-213ENST00000540022 USP6P35125 1406 aa25.91■■□□□ 1.74
TNFRSF1A-213ENST00000540022 EDC4Q6P2E9 1401 aaKnown RBP25.9■■□□□ 1.74
TNFRSF1A-213ENST00000540022 NPHP3Q7Z494 1330 aa25.9■■□□□ 1.74
TNFRSF1A-213ENST00000540022 PXDNQ92626 1479 aa25.89■■□□□ 1.74
TNFRSF1A-213ENST00000540022 AMER1Q5JTC6 1135 aaPredicted RBP25.89■■□□□ 1.74
TNFRSF1A-213ENST00000540022 KRT28Q7Z3Y7 464 aa25.88■■□□□ 1.73
TNFRSF1A-213ENST00000540022 AKAP12Q02952 1782 aa25.88■■□□□ 1.73
TNFRSF1A-213ENST00000540022 PSME1Q06323 249 aa25.88■■□□□ 1.73
TNFRSF1A-213ENST00000540022 POTEAQ6S8J7 498 aa25.88■■□□□ 1.73
TNFRSF1A-213ENST00000540022 SSH2Q76I76 1423 aa25.88■■□□□ 1.73
TNFRSF1A-213ENST00000540022 NUTM2BA6NNL0 878 aaPredicted RBP25.87■■□□□ 1.73
TNFRSF1A-213ENST00000540022 NUTM2EB1AL46 878 aaPredicted RBP25.87■■□□□ 1.73
TNFRSF1A-213ENST00000540022 CNGB1Q14028 1251 aaPredicted RBP25.87■■□□□ 1.73
TNFRSF1A-213ENST00000540022 NUTM2AQ8IVF1 878 aaPredicted RBP25.87■■□□□ 1.73
TNFRSF1A-213ENST00000540022 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.87■■□□□ 1.73
TNFRSF1A-213ENST00000540022 MON2Q7Z3U7 1717 aa25.86■■□□□ 1.73
TNFRSF1A-213ENST00000540022 CGNL1Q0VF96 1302 aa25.86■■□□□ 1.73
TNFRSF1A-213ENST00000540022 TTC21BQ7Z4L5 1316 aa25.86■■□□□ 1.73
TNFRSF1A-213ENST00000540022 MEX3CQ5U5Q3 659 aaKnown RBP25.85■■□□□ 1.73
TNFRSF1A-213ENST00000540022 COL22A1Q8NFW1 1626 aaPredicted RBP25.85■■□□□ 1.73
TNFRSF1A-213ENST00000540022 CC2D1BQ5T0F9 858 aaKnown RBP25.84■■□□□ 1.73
TNFRSF1A-213ENST00000540022 NPC1L1Q9UHC9 1359 aa25.83■■□□□ 1.73
TNFRSF1A-213ENST00000540022 NRKQ7Z2Y5 1582 aa25.83■■□□□ 1.73
TNFRSF1A-213ENST00000540022 FYB1O15117 783 aa25.83■■□□□ 1.72
TNFRSF1A-213ENST00000540022 ANP32CO43423 234 aa25.81■■□□□ 1.72
TNFRSF1A-213ENST00000540022 NME9Q86XW9 330 aa25.81■■□□□ 1.72
TNFRSF1A-213ENST00000540022 BRD4O60885 1362 aaPredicted RBP25.81■■□□□ 1.72
TNFRSF1A-213ENST00000540022 GGNBP2Q9H3C7 697 aa25.8■■□□□ 1.72
TNFRSF1A-213ENST00000540022 TTC21AQ8NDW8 1320 aa25.8■■□□□ 1.72
TNFRSF1A-213ENST00000540022 PRKRIP1Q9H875 184 aaPredicted RBP25.79■■□□□ 1.72
TNFRSF1A-213ENST00000540022 TRPM3Q9HCF6 1732 aaPredicted RBP25.79■■□□□ 1.72
TNFRSF1A-213ENST00000540022 SPATA31A3Q5VYP0 1347 aa25.78■■□□□ 1.72
TNFRSF1A-213ENST00000540022 PAK3O75914 559 aaPredicted RBP25.78■■□□□ 1.72
TNFRSF1A-213ENST00000540022 NSD2O96028 1365 aa25.78■■□□□ 1.72
TNFRSF1A-213ENST00000540022 SBNO1A3KN83 1393 aa25.77■■□□□ 1.72
TNFRSF1A-213ENST00000540022 ZRANB1Q9UGI0 708 aa25.77■■□□□ 1.72
TNFRSF1A-213ENST00000540022 LMOD2Q6P5Q4 547 aa25.75■■□□□ 1.71
TNFRSF1A-213ENST00000540022 MARF1Q9Y4F3 1742 aaKnown RBP25.75■■□□□ 1.71
TNFRSF1A-213ENST00000540022 TNS3Q68CZ2 1445 aa25.75■■□□□ 1.71
TNFRSF1A-213ENST00000540022 PARD3Q8TEW0 1356 aa25.75■■□□□ 1.71
TNFRSF1A-213ENST00000540022 ZNF772Q68DY9 489 aaPredicted RBP25.74■■□□□ 1.71
TNFRSF1A-213ENST00000540022 MIER1Q8N108 512 aa25.74■■□□□ 1.71
TNFRSF1A-213ENST00000540022 NUTM2GQ5VZR2 741 aa25.73■■□□□ 1.71
TNFRSF1A-213ENST00000540022 AFF2P51816 1311 aa25.73■■□□□ 1.71
TNFRSF1A-213ENST00000540022 PLEKHG5O94827 1062 aa25.73■■□□□ 1.71
TNFRSF1A-213ENST00000540022 RALBP1Q15311 655 aa25.73■■□□□ 1.71
TNFRSF1A-213ENST00000540022 MORC1Q86VD1 984 aa25.73■■□□□ 1.71
TNFRSF1A-213ENST00000540022 ABTB2Q8N961 1025 aa25.73■■□□□ 1.71
TNFRSF1A-213ENST00000540022 ADAMTS2O95450 1211 aa25.72■■□□□ 1.71
TNFRSF1A-213ENST00000540022 C8orf37Q96NL8 207 aa25.72■■□□□ 1.71
TNFRSF1A-213ENST00000540022 USP31Q70CQ4 1352 aa25.71■■□□□ 1.71
TNFRSF1A-213ENST00000540022 COG3Q96JB2 828 aa25.7■■□□□ 1.7
TNFRSF1A-213ENST00000540022 PIK3C2AO00443 1686 aa25.7■■□□□ 1.7
TNFRSF1A-213ENST00000540022 ALS2Q96Q42 1657 aa25.7■■□□□ 1.7
TNFRSF1A-213ENST00000540022 OVOS2A0A0J9YW53 1432 aa25.7■■□□□ 1.7
TNFRSF1A-213ENST00000540022 OVOS2Q6IE36 1432 aa25.7■■□□□ 1.7
TNFRSF1A-213ENST00000540022 NLRP6P59044 892 aa25.69■■□□□ 1.7
TNFRSF1A-213ENST00000540022 KIF20BQ96Q89 1820 aa25.69■■□□□ 1.7
TNFRSF1A-213ENST00000540022 CABLES1Q8TDN4 633 aa25.68■■□□□ 1.7
TNFRSF1A-213ENST00000540022 TNNT2P45379 298 aaPredicted RBP25.67■■□□□ 1.7
TNFRSF1A-213ENST00000540022 ARHGEF10O15013 1369 aa25.65■■□□□ 1.7
TNFRSF1A-213ENST00000540022 ABCA3Q99758 1704 aa25.65■■□□□ 1.7
TNFRSF1A-213ENST00000540022 NLRP13Q86W25 1043 aa25.64■■□□□ 1.7
TNFRSF1A-213ENST00000540022 NGLY1Q96IV0 654 aa25.64■■□□□ 1.7
TNFRSF1A-213ENST00000540022 PPP2R1AP30153 589 aa25.63■■□□□ 1.69
TNFRSF1A-213ENST00000540022 ANKRD26Q9UPS8 1709 aa25.63■■□□□ 1.69
TNFRSF1A-213ENST00000540022 MYBBP1AQ9BQG0 1328 aaKnown RBP25.63■■□□□ 1.69
TNFRSF1A-213ENST00000540022 FBLN1P23142 703 aa25.63■■□□□ 1.69
TNFRSF1A-213ENST00000540022 FNBP4Q8N3X1 1017 aaPredicted RBP25.6■■□□□ 1.69
TNFRSF1A-213ENST00000540022 USP19O94966 1318 aa25.6■■□□□ 1.69
TNFRSF1A-213ENST00000540022 USP54Q70EL1 1684 aa25.6■■□□□ 1.69
TNFRSF1A-213ENST00000540022 RXRBP28702 533 aa25.59■■□□□ 1.69
TNFRSF1A-213ENST00000540022 SOX12O15370 315 aa25.58■■□□□ 1.69
TNFRSF1A-213ENST00000540022 QTRT2Q9H974 415 aaKnown RBP25.58■■□□□ 1.69
TNFRSF1A-213ENST00000540022 AATKQ6ZMQ8 1374 aa25.57■■□□□ 1.68
TNFRSF1A-213ENST00000540022 USP21Q9UK80 565 aa25.57■■□□□ 1.68
TNFRSF1A-213ENST00000540022 CDK12Q9NYV4 1490 aaPredicted RBP25.56■■□□□ 1.68
TNFRSF1A-213ENST00000540022 CCDC184Q52MB2 194 aa25.56■■□□□ 1.68
TNFRSF1A-213ENST00000540022 CRYBG1Q9Y4K1 1723 aa25.55■■□□□ 1.68
TNFRSF1A-213ENST00000540022 GCP02774 474 aa25.55■■□□□ 1.68
TNFRSF1A-213ENST00000540022 SLIT3O75094 1523 aa25.55■■□□□ 1.68
TNFRSF1A-213ENST00000540022 BCL9LQ86UU0 1499 aa25.55■■□□□ 1.68
TNFRSF1A-213ENST00000540022 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.55■■□□□ 1.68
TNFRSF1A-213ENST00000540022 CCER2I3L3R5 266 aa25.54■■□□□ 1.68
TNFRSF1A-213ENST00000540022 RRS1Q15050 365 aaKnown RBP25.54■■□□□ 1.68
TNFRSF1A-213ENST00000540022 POLKQ9UBT6 870 aa25.54■■□□□ 1.68
TNFRSF1A-213ENST00000540022 MTHFSP49914 203 aa25.53■■□□□ 1.68
TNFRSF1A-213ENST00000540022 KCNH5Q8NCM2 988 aa25.53■■□□□ 1.68
TNFRSF1A-213ENST00000540022 RBM6P78332 1123 aaKnown RBP25.53■■□□□ 1.68
TNFRSF1A-213ENST00000540022 EMILIN1Q9Y6C2 1016 aa25.53■■□□□ 1.68
TNFRSF1A-213ENST00000540022 PHRF1Q9P1Y6 1649 aaKnown RBP25.52■■□□□ 1.68
TNFRSF1A-213ENST00000540022 HAP1P54257 671 aaPredicted RBP25.52■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms