RNA–Protein interactions for RNA: ENST00000540010.1

TRAF1-202, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 4,303 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-202ENST00000540010 LTKP29376 864 aa12.71□□□□□ -0.37
TRAF1-202ENST00000540010 TCP11L2Q8N4U5 519 aa12.71□□□□□ -0.37
TRAF1-202ENST00000540010 NGEFQ8N5V2 710 aa12.71□□□□□ -0.37
TRAF1-202ENST00000540010 E9PSI1 815 aa12.71□□□□□ -0.38
TRAF1-202ENST00000540010 CCDC61Q9Y6R9 512 aa12.71□□□□□ -0.38
TRAF1-202ENST00000540010 FANCIQ9NVI1 1328 aa12.7□□□□□ -0.38
TRAF1-202ENST00000540010 PDE4AP27815 886 aa12.7□□□□□ -0.38
TRAF1-202ENST00000540010 CLUAP1Q96AJ1 413 aa12.7□□□□□ -0.38
TRAF1-202ENST00000540010 DIAPH1O60610 1272 aaKnown RBP12.69□□□□□ -0.38
TRAF1-202ENST00000540010 COG3Q96JB2 828 aa12.69□□□□□ -0.38
TRAF1-202ENST00000540010 HSP90AB1P08238 724 aaKnown RBP12.69□□□□□ -0.38
TRAF1-202ENST00000540010 SOX12O15370 315 aa12.69□□□□□ -0.38
TRAF1-202ENST00000540010 AMOTL2Q9Y2J4 779 aa12.68□□□□□ -0.38
TRAF1-202ENST00000540010 NCKAP5LQ9HCH0 1330 aa12.68□□□□□ -0.38
TRAF1-202ENST00000540010 SLFN5Q08AF3 891 aa12.68□□□□□ -0.38
TRAF1-202ENST00000540010 DUSP27Q5VZP5 1158 aa12.68□□□□□ -0.38
TRAF1-202ENST00000540010 PNNQ9H307 717 aaKnown RBP12.68□□□□□ -0.38
TRAF1-202ENST00000540010 PPIP5K1Q6PFW1 1433 aa12.67□□□□□ -0.38
TRAF1-202ENST00000540010 PTMAP06454 111 aaKnown RBP12.67□□□□□ -0.38
TRAF1-202ENST00000540010 RNF123Q5XPI4 1314 aa12.67□□□□□ -0.38
TRAF1-202ENST00000540010 NLRP1Q9C000 1473 aa12.67□□□□□ -0.38
TRAF1-202ENST00000540010 NME9Q86XW9 330 aa12.66□□□□□ -0.38
TRAF1-202ENST00000540010 WWC1Q8IX03 1113 aa12.66□□□□□ -0.38
TRAF1-202ENST00000540010 FBLN1P23142 703 aa12.66□□□□□ -0.38
TRAF1-202ENST00000540010 DNTTIP2Q5QJE6 756 aaKnown RBP12.66□□□□□ -0.38
TRAF1-202ENST00000540010 C14orf37Q86TY3 774 aa12.66□□□□□ -0.38
TRAF1-202ENST00000540010 NGDNQ8NEJ9 315 aaKnown RBP12.66□□□□□ -0.38
TRAF1-202ENST00000540010 ZBTB7CA1YPR0 619 aa12.66□□□□□ -0.38
TRAF1-202ENST00000540010 CRBNQ96SW2 442 aa12.66□□□□□ -0.38
TRAF1-202ENST00000540010 PLCB2Q00722 1185 aa12.65□□□□□ -0.38
TRAF1-202ENST00000540010 ZNF692Q9BU19 519 aaPredicted RBP12.65□□□□□ -0.38
TRAF1-202ENST00000540010 PLEKHG1Q9ULL1 1385 aa12.64□□□□□ -0.39
TRAF1-202ENST00000540010 HSCBQ8IWL3 235 aa12.64□□□□□ -0.39
TRAF1-202ENST00000540010 PMFBP1Q8TBY8 1022 aa12.64□□□□□ -0.39
TRAF1-202ENST00000540010 SIRT1Q96EB6 747 aa12.64□□□□□ -0.39
TRAF1-202ENST00000540010 ROBO2Q9HCK4 1378 aa12.63□□□□□ -0.39
TRAF1-202ENST00000540010 SPINK5Q9NQ38 1064 aaPredicted RBP12.63□□□□□ -0.39
TRAF1-202ENST00000540010 DLC1Q96QB1 1528 aa12.63□□□□□ -0.39
TRAF1-202ENST00000540010 APBB1O00213 710 aa12.63□□□□□ -0.39
TRAF1-202ENST00000540010 ANKLE2Q86XL3 938 aa12.63□□□□□ -0.39
TRAF1-202ENST00000540010 ZRANB1Q9UGI0 708 aa12.62□□□□□ -0.39
TRAF1-202ENST00000540010 TBX22Q9Y458 520 aa12.62□□□□□ -0.39
TRAF1-202ENST00000540010 FAM135BQ49AJ0 1406 aa12.62□□□□□ -0.39
TRAF1-202ENST00000540010 HMOX1P09601 288 aa12.62□□□□□ -0.39
TRAF1-202ENST00000540010 ZNF521Q96K83 1311 aa12.61□□□□□ -0.39
TRAF1-202ENST00000540010 EMILIN1Q9Y6C2 1016 aa12.61□□□□□ -0.39
TRAF1-202ENST00000540010 RIPK4P57078 832 aa12.61□□□□□ -0.39
TRAF1-202ENST00000540010 RRS1Q15050 365 aaKnown RBP12.61□□□□□ -0.39
TRAF1-202ENST00000540010 DMRT2Q9Y5R5 561 aa12.61□□□□□ -0.39
TRAF1-202ENST00000540010 BCL2L13Q9BXK5 485 aa12.61□□□□□ -0.39
TRAF1-202ENST00000540010 ACEP12821 1306 aa12.6□□□□□ -0.39
TRAF1-202ENST00000540010 BCAR3O75815 825 aa12.6□□□□□ -0.39
TRAF1-202ENST00000540010 MFAP1P55081 439 aaKnown RBP12.6□□□□□ -0.39
TRAF1-202ENST00000540010 C20orf194Q5TEA3 1177 aa12.6□□□□□ -0.39
TRAF1-202ENST00000540010 WDR63Q8IWG1 891 aa12.6□□□□□ -0.39
TRAF1-202ENST00000540010 NKTRP30414 1462 aaKnown RBP12.6□□□□□ -0.39
TRAF1-202ENST00000540010 PAK3O75914 559 aaPredicted RBP12.6□□□□□ -0.39
TRAF1-202ENST00000540010 POLKQ9UBT6 870 aa12.6□□□□□ -0.39
TRAF1-202ENST00000540010 ATP7BP35670 1465 aa12.6□□□□□ -0.39
TRAF1-202ENST00000540010 PRKAR2BP31323 418 aa12.59□□□□□ -0.39
TRAF1-202ENST00000540010 L1TD1Q5T7N2 865 aaKnown RBP12.59□□□□□ -0.39
TRAF1-202ENST00000540010 EDC4Q6P2E9 1401 aaKnown RBP12.59□□□□□ -0.39
TRAF1-202ENST00000540010 MS4A1P11836 297 aa12.59□□□□□ -0.39
TRAF1-202ENST00000540010 ADAMTS13Q76LX8 1427 aa12.59□□□□□ -0.39
TRAF1-202ENST00000540010 TMPOP42166 694 aaKnown RBP12.58□□□□□ -0.39
TRAF1-202ENST00000540010 CASC1Q6TDU7 716 aa12.58□□□□□ -0.4
TRAF1-202ENST00000540010 ITPRIPQ8IWB1 547 aa12.58□□□□□ -0.4
TRAF1-202ENST00000540010 PRR36Q9H6K5 1346 aa12.58□□□□□ -0.4
TRAF1-202ENST00000540010 CD163L1Q9NR16 1453 aa12.57□□□□□ -0.4
TRAF1-202ENST00000540010 KCNA6P17658 529 aa12.57□□□□□ -0.4
TRAF1-202ENST00000540010 RBM33Q96EV2 1170 aaKnown RBP12.57□□□□□ -0.4
TRAF1-202ENST00000540010 UBR1Q8IWV7 1749 aa12.57□□□□□ -0.4
TRAF1-202ENST00000540010 FCHSD2O94868 740 aa12.57□□□□□ -0.4
TRAF1-202ENST00000540010 RWDD1Q9H446 243 aaPredicted RBP12.57□□□□□ -0.4
TRAF1-202ENST00000540010 USP32Q8NFA0 1604 aa12.57□□□□□ -0.4
TRAF1-202ENST00000540010 TSR2Q969E8 191 aaKnown RBP12.56□□□□□ -0.4
TRAF1-202ENST00000540010 FOXD4L1Q9NU39 408 aa12.56□□□□□ -0.4
TRAF1-202ENST00000540010 TTC21BQ7Z4L5 1316 aa12.56□□□□□ -0.4
TRAF1-202ENST00000540010 FER1L4A9Z1Z3 1794 aa12.56□□□□□ -0.4
TRAF1-202ENST00000540010 GSE1Q14687 1217 aa12.56□□□□□ -0.4
TRAF1-202ENST00000540010 TECPR2O15040 1411 aa12.56□□□□□ -0.4
TRAF1-202ENST00000540010 NUTM2GQ5VZR2 741 aa12.55□□□□□ -0.4
TRAF1-202ENST00000540010 COG6Q9Y2V7 657 aa12.55□□□□□ -0.4
TRAF1-202ENST00000540010 AMPHP49418 695 aa12.54□□□□□ -0.4
TRAF1-202ENST00000540010 CCDC27Q2M243 656 aa12.54□□□□□ -0.4
TRAF1-202ENST00000540010 TRMT2AQ8IZ69 625 aaKnown RBP12.54□□□□□ -0.4
TRAF1-202ENST00000540010 ARID3AQ99856 593 aa12.54□□□□□ -0.4
TRAF1-202ENST00000540010 USP35Q9P2H5 1018 aa12.54□□□□□ -0.4
TRAF1-202ENST00000540010 FAM161AQ3B820 660 aa12.54□□□□□ -0.4
TRAF1-202ENST00000540010 SMC4Q9NTJ3 1288 aa12.54□□□□□ -0.4
TRAF1-202ENST00000540010 NRXN3Q9Y4C0 1643 aa12.54□□□□□ -0.4
TRAF1-202ENST00000540010 C3P01024 1663 aa12.53□□□□□ -0.4
TRAF1-202ENST00000540010 MED14O60244 1454 aa12.53□□□□□ -0.4
TRAF1-202ENST00000540010 NLRP6P59044 892 aa12.53□□□□□ -0.4
TRAF1-202ENST00000540010 LMOD2Q6P5Q4 547 aa12.53□□□□□ -0.4
TRAF1-202ENST00000540010 TAOK2Q9UL54 1235 aa12.53□□□□□ -0.4
TRAF1-202ENST00000540010 PLEKHG3A1L390 1219 aa12.53□□□□□ -0.4
TRAF1-202ENST00000540010 CALD1Q05682 793 aaKnown RBP12.53□□□□□ -0.4
TRAF1-202ENST00000540010 EXOSC9Q06265 439 aaKnown RBP12.53□□□□□ -0.4
TRAF1-202ENST00000540010 PANK1Q8TE04 598 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms