RNA–Protein interactions for RNA: ENST00000535493.5

HDAC4-214, Transcript of histone deacetylase 4, humanhuman

TSL 2

Gene HDAC4, Length 2,743 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-214ENST00000535493 ATP7AQ04656 1500 aa16.77■□□□□ 0.28
HDAC4-214ENST00000535493 SSFA2P28290 1259 aa16.77■□□□□ 0.28
HDAC4-214ENST00000535493 DDIT3P35638 169 aa16.77■□□□□ 0.28
HDAC4-214ENST00000535493 MINK1Q8N4C8 1332 aaPredicted RBP16.77■□□□□ 0.28
HDAC4-214ENST00000535493 HMOX1P09601 288 aa16.76■□□□□ 0.27
HDAC4-214ENST00000535493 RBM25P49756 843 aaKnown RBP16.76■□□□□ 0.27
HDAC4-214ENST00000535493 TSPYL6Q8N831 410 aa16.76■□□□□ 0.27
HDAC4-214ENST00000535493 TRIM44Q96DX7 344 aaPredicted RBP16.76■□□□□ 0.27
HDAC4-214ENST00000535493 ZMYM3Q14202 1370 aa16.76■□□□□ 0.27
HDAC4-214ENST00000535493 FYB1O15117 783 aa16.76■□□□□ 0.27
HDAC4-214ENST00000535493 A0A1W2PP64 1363 aa16.75■□□□□ 0.27
HDAC4-214ENST00000535493 ATAD2Q6PL18 1390 aa16.75■□□□□ 0.27
HDAC4-214ENST00000535493 TBC1D9Q6ZT07 1266 aa16.75■□□□□ 0.27
HDAC4-214ENST00000535493 GAS2L2Q8NHY3 880 aa16.75■□□□□ 0.27
HDAC4-214ENST00000535493 KIAA1210Q9ULL0 1709 aa16.75■□□□□ 0.27
HDAC4-214ENST00000535493 SHROOM2Q13796 1616 aa16.74■□□□□ 0.27
HDAC4-214ENST00000535493 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.74■□□□□ 0.271e-6■■□□□ 13.7
HDAC4-214ENST00000535493 ADGRL1O94910 1474 aa16.74■□□□□ 0.27
HDAC4-214ENST00000535493 ANKRD36BQ8N2N9 1353 aa16.74■□□□□ 0.27
HDAC4-214ENST00000535493 HSP90AA2PQ14568 343 aaPredicted RBP16.74■□□□□ 0.27
HDAC4-214ENST00000535493 RAB3GAP1Q15042 981 aa16.73■□□□□ 0.27
HDAC4-214ENST00000535493 VSIG10Q8N0Z9 540 aa16.73■□□□□ 0.27
HDAC4-214ENST00000535493 KIF1BO60333 1816 aa16.73■□□□□ 0.27
HDAC4-214ENST00000535493 DEPDC5O75140 1603 aa16.73■□□□□ 0.27
HDAC4-214ENST00000535493 IPO8O15397 1037 aaKnown RBP16.73■□□□□ 0.27
HDAC4-214ENST00000535493 SIRT2Q8IXJ6 389 aa16.73■□□□□ 0.27
HDAC4-214ENST00000535493 PHACTR3Q96KR7 559 aa16.73■□□□□ 0.27
HDAC4-214ENST00000535493 APBB1O00213 710 aa16.72■□□□□ 0.27
HDAC4-214ENST00000535493 DIAPH1O60610 1272 aaKnown RBP16.72■□□□□ 0.27
HDAC4-214ENST00000535493 PRKAR2BP31323 418 aa16.72■□□□□ 0.27
HDAC4-214ENST00000535493 GBP4Q96PP9 640 aa16.72■□□□□ 0.27
HDAC4-214ENST00000535493 QRICH2Q9H0J4 1663 aa16.72■□□□□ 0.27
HDAC4-214ENST00000535493 NCLP19338 710 aaKnown RBP16.72■□□□□ 0.27
HDAC4-214ENST00000535493 CHAMP1Q96JM3 812 aa16.72■□□□□ 0.27
HDAC4-214ENST00000535493 ZBTB7BO15156 539 aaPredicted RBP16.71■□□□□ 0.27
HDAC4-214ENST00000535493 CT47B1P0C2W7 299 aaPredicted RBP16.71■□□□□ 0.27
HDAC4-214ENST00000535493 SNX21Q969T3 373 aa16.71■□□□□ 0.27
HDAC4-214ENST00000535493 VWDEQ8N2E2 1590 aa16.71■□□□□ 0.27
HDAC4-214ENST00000535493 MROH1Q8NDA8 1641 aa16.71■□□□□ 0.27
HDAC4-214ENST00000535493 PKP1Q13835 747 aa16.7■□□□□ 0.26
HDAC4-214ENST00000535493 NPATQ14207 1427 aa16.7■□□□□ 0.26
HDAC4-214ENST00000535493 C16orf71Q8IYS4 520 aaPredicted RBP16.7■□□□□ 0.26
HDAC4-214ENST00000535493 KIF16BQ96L93 1317 aa16.7■□□□□ 0.26
HDAC4-214ENST00000535493 NRXN1Q9ULB1 1477 aa16.7■□□□□ 0.26
HDAC4-214ENST00000535493 PPIP5K1Q6PFW1 1433 aa16.7■□□□□ 0.26
HDAC4-214ENST00000535493 BMP2KLQ5H9B9 411 aa16.7■□□□□ 0.26
HDAC4-214ENST00000535493 NCOA3Q9Y6Q9 1424 aa16.7■□□□□ 0.26
HDAC4-214ENST00000535493 K7ELQ4 463 aaPredicted RBP16.69■□□□□ 0.26
HDAC4-214ENST00000535493 DDX49Q9Y6V7 483 aaKnown RBP16.69■□□□□ 0.26
HDAC4-214ENST00000535493 PPRC1Q5VV67 1664 aaKnown RBP16.69■□□□□ 0.26
HDAC4-214ENST00000535493 ADGRB1O14514 1584 aa16.69■□□□□ 0.26
HDAC4-214ENST00000535493 EFCAB6Q5THR3 1501 aa16.68■□□□□ 0.26
HDAC4-214ENST00000535493 TULP4Q9NRJ4 1543 aa16.68■□□□□ 0.26
HDAC4-214ENST00000535493 AK9Q5TCS8 1911 aa16.68■□□□□ 0.26
HDAC4-214ENST00000535493 PRAM1Q96QH2 718 aa16.68■□□□□ 0.26
HDAC4-214ENST00000535493 CABP1Q9NZU7 370 aa16.68■□□□□ 0.26
HDAC4-214ENST00000535493 MCTP1Q6DN14 999 aa16.67■□□□□ 0.26
HDAC4-214ENST00000535493 FAM83GA6ND36 823 aa16.66■□□□□ 0.26
HDAC4-214ENST00000535493 VAMP4O75379 141 aa16.66■□□□□ 0.26
HDAC4-214ENST00000535493 GSPT1P15170 499 aaKnown RBP16.66■□□□□ 0.26
HDAC4-214ENST00000535493 NASPP49321 788 aaPredicted RBP16.66■□□□□ 0.26
HDAC4-214ENST00000535493 DCTN1Q14203 1278 aa16.66■□□□□ 0.26
HDAC4-214ENST00000535493 FOXD4L5Q5VV16 416 aaPredicted RBP16.66■□□□□ 0.26
HDAC4-214ENST00000535493 OTUD7AQ8TE49 926 aaPredicted RBP16.66■□□□□ 0.26
HDAC4-214ENST00000535493 FOXD4L4Q8WXT5 416 aaPredicted RBP16.66■□□□□ 0.26
HDAC4-214ENST00000535493 ABCC11Q96J66 1382 aa16.66■□□□□ 0.26
HDAC4-214ENST00000535493 MYO3AQ8NEV4 1616 aa16.66■□□□□ 0.26
HDAC4-214ENST00000535493 VGFO15240 615 aaPredicted RBP16.65■□□□□ 0.26
HDAC4-214ENST00000535493 BAG4O95429 457 aaKnown RBP16.65■□□□□ 0.26
HDAC4-214ENST00000535493 IDI1Q13907 227 aa16.65■□□□□ 0.26
HDAC4-214ENST00000535493 INO80Q9ULG1 1556 aaPredicted RBP16.65■□□□□ 0.26
HDAC4-214ENST00000535493 ADGRB2O60241 1585 aa16.64■□□□□ 0.25
HDAC4-214ENST00000535493 CAVIN1Q6NZI2 390 aaKnown RBP16.64■□□□□ 0.25
HDAC4-214ENST00000535493 MRPL50Q8N5N7 158 aaKnown RBP16.64■□□□□ 0.25
HDAC4-214ENST00000535493 IFT172Q9UG01 1749 aa16.64■□□□□ 0.25
HDAC4-214ENST00000535493 ADGRB3O60242 1522 aa16.64■□□□□ 0.25
HDAC4-214ENST00000535493 CIZ1Q9ULV3 898 aaPredicted RBP16.64■□□□□ 0.25
HDAC4-214ENST00000535493 C8orf58Q8NAV2 365 aa16.63■□□□□ 0.25
HDAC4-214ENST00000535493 ALDH1L2Q3SY69 923 aa16.63■□□□□ 0.25
HDAC4-214ENST00000535493 ZMYND15Q9H091 742 aa16.63■□□□□ 0.25
HDAC4-214ENST00000535493 EMILIN1Q9Y6C2 1016 aa16.63■□□□□ 0.25
HDAC4-214ENST00000535493 SMARCA5O60264 1052 aaPredicted RBP16.62■□□□□ 0.25
HDAC4-214ENST00000535493 RAPGEF3O95398 923 aa16.62■□□□□ 0.25
HDAC4-214ENST00000535493 KRT24Q2M2I5 525 aa16.62■□□□□ 0.25
HDAC4-214ENST00000535493 MBIPQ9NS73 344 aa16.62■□□□□ 0.25
HDAC4-214ENST00000535493 TERF2IPQ9NYB0 399 aa16.62■□□□□ 0.25
HDAC4-214ENST00000535493 ZRANB1Q9UGI0 708 aa16.62■□□□□ 0.25
HDAC4-214ENST00000535493 IL16Q14005 1332 aa16.62■□□□□ 0.25
HDAC4-214ENST00000535493 GCC1Q96CN9 775 aa16.62■□□□□ 0.25
HDAC4-214ENST00000535493 NSD2O96028 1365 aa16.62■□□□□ 0.25
HDAC4-214ENST00000535493 ZBTB7CA1YPR0 619 aa16.61■□□□□ 0.25
HDAC4-214ENST00000535493 KIAA1211Q6ZU35 1233 aa16.61■□□□□ 0.25
HDAC4-214ENST00000535493 ZGPATQ8N5A5 531 aaKnown RBP16.61■□□□□ 0.25
HDAC4-214ENST00000535493 RBM27Q9P2N5 1060 aaKnown RBP16.61■□□□□ 0.25
HDAC4-214ENST00000535493 SKOR2Q2VWA4 1001 aaPredicted RBP16.61■□□□□ 0.25
HDAC4-214ENST00000535493 POLKQ9UBT6 870 aa16.61■□□□□ 0.25
HDAC4-214ENST00000535493 SETBP1Q9Y6X0 1596 aa16.61■□□□□ 0.25
HDAC4-214ENST00000535493 CDK19Q9BWU1 502 aa16.61■□□□□ 0.25
HDAC4-214ENST00000535493 COL3A1P02461 1466 aaPredicted RBP16.6■□□□□ 0.25
HDAC4-214ENST00000535493 GOLGA6L22H0YM25 854 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms