RNA–Protein interactions for RNA: ENST00000530700.1

USH1C-209, Transcript of USH1 protein network component harmonin, humanhuman

TSL 3

Gene USH1C, Length 403 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-209ENST00000530700 DDX17Q92841 729 aaKnown RBP18.57■□□□□ 0.56
USH1C-209ENST00000530700 ITSN1Q15811 1721 aa18.57■□□□□ 0.56
USH1C-209ENST00000530700 NSD3Q9BZ95 1437 aa18.57■□□□□ 0.56
USH1C-209ENST00000530700 NLRP6P59044 892 aa18.56■□□□□ 0.56
USH1C-209ENST00000530700 LMOD2Q6P5Q4 547 aa18.56■□□□□ 0.56
USH1C-209ENST00000530700 COG3Q96JB2 828 aa18.56■□□□□ 0.56
USH1C-209ENST00000530700 KIF1AQ12756 1690 aa18.56■□□□□ 0.56
USH1C-209ENST00000530700 NPC1L1Q9UHC9 1359 aa18.55■□□□□ 0.56
USH1C-209ENST00000530700 SPATA31A3Q5VYP0 1347 aa18.55■□□□□ 0.56
USH1C-209ENST00000530700 AMER1Q5JTC6 1135 aaPredicted RBP18.55■□□□□ 0.56
USH1C-209ENST00000530700 SSH2Q76I76 1423 aa18.55■□□□□ 0.56
USH1C-209ENST00000530700 NSD2O96028 1365 aa18.55■□□□□ 0.56
USH1C-209ENST00000530700 MSH5O43196 834 aa18.54■□□□□ 0.56
USH1C-209ENST00000530700 ARHGEF10O15013 1369 aa18.54■□□□□ 0.56
USH1C-209ENST00000530700 TOPAZ1Q8N9V7 1692 aa18.54■□□□□ 0.56
USH1C-209ENST00000530700 DIEXFQ68CQ4 756 aaKnown RBP18.53■□□□□ 0.56
USH1C-209ENST00000530700 ANP32CO43423 234 aa18.52■□□□□ 0.56
USH1C-209ENST00000530700 MORC1Q86VD1 984 aa18.52■□□□□ 0.56
USH1C-209ENST00000530700 NME9Q86XW9 330 aa18.52■□□□□ 0.56
USH1C-209ENST00000530700 RALBP1Q15311 655 aa18.51■□□□□ 0.55
USH1C-209ENST00000530700 POTEDQ86YR6 584 aa18.51■□□□□ 0.55
USH1C-209ENST00000530700 KCNH5Q8NCM2 988 aa18.51■□□□□ 0.55
USH1C-209ENST00000530700 GGNBP2Q9H3C7 697 aa18.51■□□□□ 0.55
USH1C-209ENST00000530700 USP31Q70CQ4 1352 aa18.51■□□□□ 0.55
USH1C-209ENST00000530700 CC2D1BQ5T0F9 858 aaKnown RBP18.5■□□□□ 0.55
USH1C-209ENST00000530700 PXDNQ92626 1479 aa18.49■□□□□ 0.55
USH1C-209ENST00000530700 RGPD8O14715 1765 aaPredicted RBP18.49■□□□□ 0.55
USH1C-209ENST00000530700 TNS3Q68CZ2 1445 aa18.49■□□□□ 0.55
USH1C-209ENST00000530700 ROBO1Q9Y6N7 1651 aa18.48■□□□□ 0.55
USH1C-209ENST00000530700 HSPA1LP34931 641 aa18.47■□□□□ 0.55
USH1C-209ENST00000530700 NUTM2GQ5VZR2 741 aa18.47■□□□□ 0.55
USH1C-209ENST00000530700 AHDC1Q5TGY3 1603 aaPredicted RBP18.47■□□□□ 0.55
USH1C-209ENST00000530700 MYOM1P52179 1685 aa18.47■□□□□ 0.55
USH1C-209ENST00000530700 HAP1P54257 671 aaPredicted RBP18.46■□□□□ 0.55
USH1C-209ENST00000530700 GCP02774 474 aa18.45■□□□□ 0.54
USH1C-209ENST00000530700 CNGB1Q14028 1251 aaPredicted RBP18.45■□□□□ 0.54
USH1C-209ENST00000530700 JCADQ9P266 1359 aa18.44■□□□□ 0.54
USH1C-209ENST00000530700 PRKRIP1Q9H875 184 aaPredicted RBP18.44■□□□□ 0.54
USH1C-209ENST00000530700 ZRANB1Q9UGI0 708 aa18.44■□□□□ 0.54
USH1C-209ENST00000530700 USP19O94966 1318 aa18.42■□□□□ 0.54
USH1C-209ENST00000530700 AKAP12Q02952 1782 aa18.42■□□□□ 0.54
USH1C-209ENST00000530700 NHSL1Q5SYE7 1610 aa18.41■□□□□ 0.54
USH1C-209ENST00000530700 MON2Q7Z3U7 1717 aa18.4■□□□□ 0.54
USH1C-209ENST00000530700 TNNT2P45379 298 aaPredicted RBP18.4■□□□□ 0.54
USH1C-209ENST00000530700 SPATA31A6Q5VVP1 1343 aa18.4■□□□□ 0.54
USH1C-209ENST00000530700 AATKQ6ZMQ8 1374 aa18.4■□□□□ 0.54
USH1C-209ENST00000530700 PNPLA6Q8IY17 1366 aa18.4■□□□□ 0.54
USH1C-209ENST00000530700 OVOS2A0A0J9YW53 1432 aa18.39■□□□□ 0.53
USH1C-209ENST00000530700 OVOS2Q6IE36 1432 aa18.39■□□□□ 0.53
USH1C-209ENST00000530700 PLEKHG5O94827 1062 aa18.38■□□□□ 0.53
USH1C-209ENST00000530700 CABLES1Q8TDN4 633 aa18.38■□□□□ 0.53
USH1C-209ENST00000530700 PARD3Q8TEW0 1356 aa18.38■□□□□ 0.53
USH1C-209ENST00000530700 SOX12O15370 315 aa18.37■□□□□ 0.53
USH1C-209ENST00000530700 MYBBP1AQ9BQG0 1328 aaKnown RBP18.37■□□□□ 0.53
USH1C-209ENST00000530700 PHLPP1O60346 1717 aa18.36■□□□□ 0.53
USH1C-209ENST00000530700 PPP2R1AP30153 589 aa18.36■□□□□ 0.53
USH1C-209ENST00000530700 AMPHP49418 695 aa18.36■□□□□ 0.53
USH1C-209ENST00000530700 ARHGEF25Q86VW2 580 aa18.36■□□□□ 0.53
USH1C-209ENST00000530700 ZC3H6P61129 1189 aaKnown RBP18.35■□□□□ 0.53
USH1C-209ENST00000530700 CFAP53Q96M91 514 aa18.35■□□□□ 0.53
USH1C-209ENST00000530700 POLKQ9UBT6 870 aa18.35■□□□□ 0.53
USH1C-209ENST00000530700 TRPM3Q9HCF6 1732 aaPredicted RBP18.35■□□□□ 0.53
USH1C-209ENST00000530700 NRKQ7Z2Y5 1582 aa18.34■□□□□ 0.53
USH1C-209ENST00000530700 KIF24Q5T7B8 1368 aa18.34■□□□□ 0.53
USH1C-209ENST00000530700 NUTM2BA6NNL0 878 aaPredicted RBP18.34■□□□□ 0.53
USH1C-209ENST00000530700 NUTM2EB1AL46 878 aaPredicted RBP18.34■□□□□ 0.53
USH1C-209ENST00000530700 MTHFSP49914 203 aa18.34■□□□□ 0.53
USH1C-209ENST00000530700 NUTM2AQ8IVF1 878 aaPredicted RBP18.34■□□□□ 0.53
USH1C-209ENST00000530700 PPM1GO15355 546 aaPredicted RBP18.33■□□□□ 0.52
USH1C-209ENST00000530700 PIAS4Q8N2W9 510 aaPredicted RBP18.33■□□□□ 0.52
USH1C-209ENST00000530700 PRDM11Q9NQV5 511 aa18.33■□□□□ 0.52
USH1C-209ENST00000530700 COL16A1Q07092 1604 aaPredicted RBP18.33■□□□□ 0.52
USH1C-209ENST00000530700 CPDO75976 1380 aa18.32■□□□□ 0.52
USH1C-209ENST00000530700 RRS1Q15050 365 aaKnown RBP18.32■□□□□ 0.52
USH1C-209ENST00000530700 IP6K1Q92551 441 aa18.32■□□□□ 0.52
USH1C-209ENST00000530700 MAP3K19Q56UN5 1328 aa18.31■□□□□ 0.52
USH1C-209ENST00000530700 ZBTB7CA1YPR0 619 aa18.31■□□□□ 0.52
USH1C-209ENST00000530700 FBLN1P23142 703 aa18.31■□□□□ 0.52
USH1C-209ENST00000530700 ALS2Q96Q42 1657 aa18.31■□□□□ 0.52
USH1C-209ENST00000530700 PIK3C2AO00443 1686 aa18.3■□□□□ 0.52
USH1C-209ENST00000530700 SLIT3O75094 1523 aa18.29■□□□□ 0.52
USH1C-209ENST00000530700 FAM83GA6ND36 823 aa18.29■□□□□ 0.52
USH1C-209ENST00000530700 CCER2I3L3R5 266 aa18.29■□□□□ 0.52
USH1C-209ENST00000530700 ADAMTS2O95450 1211 aa18.29■□□□□ 0.52
USH1C-209ENST00000530700 MEX3CQ5U5Q3 659 aaKnown RBP18.29■□□□□ 0.52
USH1C-209ENST00000530700 EMILIN1Q9Y6C2 1016 aa18.29■□□□□ 0.52
USH1C-209ENST00000530700 KIAA0232Q92628 1395 aa18.29■□□□□ 0.52
USH1C-209ENST00000530700 HOXC9P31274 260 aa18.28■□□□□ 0.52
USH1C-209ENST00000530700 NUDCQ9Y266 331 aa18.28■□□□□ 0.52
USH1C-209ENST00000530700 MED1Q15648 1581 aaPredicted RBP18.28■□□□□ 0.52
USH1C-209ENST00000530700 RTL1A6NKG5 1358 aa18.28■□□□□ 0.52
USH1C-209ENST00000530700 MIER1Q8N108 512 aa18.27■□□□□ 0.52
USH1C-209ENST00000530700 FLT4P35916 1363 aa18.27■□□□□ 0.51
USH1C-209ENST00000530700 EVA1CP58658 441 aa18.26■□□□□ 0.51
USH1C-209ENST00000530700 NGLY1Q96IV0 654 aa18.26■□□□□ 0.51
USH1C-209ENST00000530700 INSRP06213 1382 aa18.26■□□□□ 0.51
USH1C-209ENST00000530700 DIAPH1O60610 1272 aaKnown RBP18.25■□□□□ 0.51
USH1C-209ENST00000530700 CHRNA2Q15822 529 aa18.25■□□□□ 0.51
USH1C-209ENST00000530700 HSP90AB2PQ58FF8 381 aa18.25■□□□□ 0.51
USH1C-209ENST00000530700 KIF20BQ96Q89 1820 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms